Lista de obras -

A Nonlinear Dynamic Systems Model of Psychotherapy: First Steps Toward Validation and the Role of External Input

artículo científico publicado en 2019

A closer look at the apparent correlation of structural and functional connectivity in excitable neural networks

artículo científico publicado en 2015

A mathematical model of cocoa bean fermentation

artículo científico publicado en 2018

A network perspective on metabolic inconsistency

artículo científico publicado en 2012

A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli

scientific article published on 03 May 2019

A topological characterization of medium-dependent essential metabolic reactions

artículo científico publicado en 2012

Analog regulation of metabolic demand ⬇️

artículo científico publicado el 15 de marzo de 2011

Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks

artículo científico publicado en 2012

Bioactivity in Rhododendron: A Systemic Analysis of Antimicrobial and Cytotoxic Activities and Their Phylogenetic and Phytochemical Origins

artículo científico publicado en 2017

Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome.

artículo científico publicado en 2017

Building blocks of self-sustained activity in a simple deterministic model of excitable neural networks

artículo científico publicado en 2012

Chromosomal origin of replication coordinates logically distinct types of bacterial genetic regulation

artículo científico publicado en 2020

Cocoa bean fingerprinting via correlation networks

artículo científico publicado en 2022

Connectivity and complex systems: learning from a multi-disciplinary perspective

artículo científico publicado en 2018

Consistency analysis of metabolic correlation networks

artículo científico publicado en 2007

Dissecting the logical types of network control in gene expression profiles

artículo científico publicado en 2008

Distinct fluorescent pattern of KAT1::GFP in the plasma membrane of Vicia faba guard cells

artículo científico publicado en 2007

Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls

artículo científico publicado en 2016

Drawing a map of invasion biology based on a network of hypotheses

article by Martin Enders et al published March 2018 in Ecosphere

Economy-on-demand and the fairness of algorithms

artículo científico publicado en 2019

Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB.

artículo científico publicado en 2016

Exploring cocoa bean fermentation mechanisms by kinetic modelling

scientific article published on 16 February 2022

Hierarchical modular brain connectivity is a stretch for criticality

artículo científico publicado en 2013

Identification of rhythmic subsystems in the circadian cycle of crassulacean acid metabolism under thermoperiodic perturbations

artículo científico publicado en 2003

Information theory reveals large-scale synchronisation of statistical correlations in eukaryote genomes

artículo científico publicado en 2005

Informational structure of two closely related eukaryotic genomes

artículo científico publicado en 2006

Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases

artículo científico publicado en 2016

Interplay between Topology and Dynamics in Excitation Patterns on Hierarchical Graphs

artículo científico publicado en 2009

Interplay of digital and analog control in time-resolved gene expression profiles

article

Link-usage asymmetry and collective patterns emerging from rich-club organization of complex networks

artículo científico publicado en 2020

Modular topology emerges from plasticity in a minimalistic excitable network model

artículo científico publicado en 2017

Motif-based success scores in coauthorship networks are highly sensitive to author name disambiguation ⬇️

artículo científico publicado en 2014

Multi-level assessment of obsessive-compulsive disorder (OCD) reveals relations between neural and neurochemical levels

artículo científico publicado en 2020

New tools for analyzing noise-induced phenomena in biological oscillators

Node Survival in Networks under Correlated Attacks

artículo científico publicado en 2015

Organization of excitable dynamics in hierarchical biological networks

artículo científico publicado en 2008

Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli

artículo científico publicado en 2010

Personality development in psychotherapy: a synergetic model of state-trait dynamics

scientific article published on 04 June 2018

Perspective: network-guided pattern formation of neural dynamics ⬇️

artículo científico

Predictability of spatio-temporal patterns in a lattice of coupled FitzHugh-Nagumo oscillators

artículo científico publicado en 2013

Predicting spiral wave patterns from cell properties in a model of biological self-organization

artículo científico publicado en 2008

Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation

artículo científico publicado en 2009

Psychotherapy Is Chaotic-(Not Only) in a Computational World

artículo científico publicado en 2017

Ranges of control in the transcriptional regulation of Escherichia coli

artículo científico publicado en 2009

Reconstruction of cellular variability from spatiotemporal patterns of Dictyostelium discoideum

artículo científico publicado en 2007

Regularizing capacity of metabolic networks

artículo científico publicado en 2007

Regulation of Spatiotemporal Patterns by Biological Variability: General Principles and Applications to Dictyostelium discoideum

artículo científico publicado en 2015

Role of long cycles in excitable dynamics on graphs

artículo científico publicado en 2014

Statistical evidence for ancestral correlation patterns

artículo científico publicado en 2010

Stochastic resonance in discrete excitable dynamics on graphs

article published in 2012

Subgraph fluctuations in random graphs

The E. coli transcriptional regulatory network and its spatial embedding

scientific article published on 20 March 2019

The Physics behind Systems Biology

The interdependent network of gene regulation and metabolism is robust where it needs to be.

artículo científico publicado en 2017

The mechanism of action of tapasin in the peptide exchange on MHC class I molecules determined from kinetics simulation studies

artículo científico publicado en 2009

The metabolic network coherence of human transcriptomes is associated with genetic variation at the cadherin 18 locus

Topological determinants of self-sustained activity in a simple model of excitable dynamics on graphs

artículo científico publicado en 2017

Topological reinforcement as a principle of modularity emergence in brain networks.

artículo científico publicado en 2019

Topology regulates the distribution pattern of excitations in excitable dynamics on graphs

scientific article published on 19 July 2006

Toward a theory of coactivation patterns in excitable neural networks

artículo científico publicado en 2018

Two classes of functional connectivity in dynamical processes in networks

artículo científico publicado en 2021

Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease.

artículo científico publicado en 2016

Understanding genetic variation - the value of systems biology

artículo científico

Lista de obras de

A Nonlinear Dynamic Systems Model of Psychotherapy: First Steps Toward Validation and the Role of External Input

A closer look at the apparent correlation of structural and functional connectivity in excitable neural networks

A mathematical model of cocoa bean fermentation

A network perspective on metabolic inconsistency

A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli

A topological characterization of medium-dependent essential metabolic reactions

Analog regulation of metabolic demand ⬇️

Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks

Bioactivity in Rhododendron: A Systemic Analysis of Antimicrobial and Cytotoxic Activities and Their Phylogenetic and Phytochemical Origins

Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome.

Building blocks of self-sustained activity in a simple deterministic model of excitable neural networks

Chromosomal origin of replication coordinates logically distinct types of bacterial genetic regulation

Cocoa bean fingerprinting via correlation networks

Connectivity and complex systems: learning from a multi-disciplinary perspective

Consistency analysis of metabolic correlation networks

Dissecting the logical types of network control in gene expression profiles

Distinct fluorescent pattern of KAT1::GFP in the plasma membrane of Vicia faba guard cells

Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls

Drawing a map of invasion biology based on a network of hypotheses

Economy-on-demand and the fairness of algorithms

Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB.

Exploring cocoa bean fermentation mechanisms by kinetic modelling

Hierarchical modular brain connectivity is a stretch for criticality

Identification of rhythmic subsystems in the circadian cycle of crassulacean acid metabolism under thermoperiodic perturbations

Information theory reveals large-scale synchronisation of statistical correlations in eukaryote genomes

Informational structure of two closely related eukaryotic genomes

Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases

Interplay between Topology and Dynamics in Excitation Patterns on Hierarchical Graphs

Interplay of digital and analog control in time-resolved gene expression profiles

Link-usage asymmetry and collective patterns emerging from rich-club organization of complex networks

Modular topology emerges from plasticity in a minimalistic excitable network model

Motif-based success scores in coauthorship networks are highly sensitive to author name disambiguation ⬇️

Multi-level assessment of obsessive-compulsive disorder (OCD) reveals relations between neural and neurochemical levels

New tools for analyzing noise-induced phenomena in biological oscillators

Node Survival in Networks under Correlated Attacks

Organization of excitable dynamics in hierarchical biological networks

Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli

Personality development in psychotherapy: a synergetic model of state-trait dynamics

Perspective: network-guided pattern formation of neural dynamics ⬇️

Predictability of spatio-temporal patterns in a lattice of coupled FitzHugh-Nagumo oscillators

Predicting spiral wave patterns from cell properties in a model of biological self-organization

Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation

Psychotherapy Is Chaotic-(Not Only) in a Computational World

Ranges of control in the transcriptional regulation of Escherichia coli

Reconstruction of cellular variability from spatiotemporal patterns of Dictyostelium discoideum

Regularizing capacity of metabolic networks

Regulation of Spatiotemporal Patterns by Biological Variability: General Principles and Applications to Dictyostelium discoideum

Role of long cycles in excitable dynamics on graphs

Statistical evidence for ancestral correlation patterns

Stochastic resonance in discrete excitable dynamics on graphs

Subgraph fluctuations in random graphs

The E. coli transcriptional regulatory network and its spatial embedding

The Physics behind Systems Biology

The interdependent network of gene regulation and metabolism is robust where it needs to be.

The mechanism of action of tapasin in the peptide exchange on MHC class I molecules determined from kinetics simulation studies

The metabolic network coherence of human transcriptomes is associated with genetic variation at the cadherin 18 locus

Topological determinants of self-sustained activity in a simple model of excitable dynamics on graphs

Topological reinforcement as a principle of modularity emergence in brain networks.

Topology regulates the distribution pattern of excitations in excitable dynamics on graphs

Toward a theory of coactivation patterns in excitable neural networks

Two classes of functional connectivity in dynamical processes in networks

Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease.

Understanding genetic variation - the value of systems biology