Lista de obras -

A random-periods model for expression of cell-cycle genes.

artículo científico publicado en 2004

ART: a next-generation sequencing read simulator.

artículo científico publicado en 2011

An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq.

artículo científico publicado en 2011

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data

scientific article published on 02 December 2019

Cloning of CYP2J2 gene and identification of functional polymorphisms

artículo científico publicado en 2002

Conformational changes in conantokin-G induced upon binding of calcium and magnesium as revealed by NMR structural analysis.

artículo científico publicado en 1998

DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas.

artículo científico publicado en 2010

Deficiency of the placenta- and yolk sac-specific tristetraprolin family member ZFP36L3 identifies likely mRNA targets and an unexpected link to placental iron metabolism

artículo científico publicado en 2016

Deuterium and its role in the machinery of evolution

artículo científico publicado en 2005

Diethylstilbestrol (DES)-stimulated hormonal toxicity is mediated by ERα alteration of target gene methylation patterns and epigenetic modifiers (DNMT3A, MBD2, and HDAC2) in the mouse seminal vesicle

artículo científico publicado en 2013

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.

artículo científico publicado en 2015

Efficiently identifying genome-wide changes with next-generation sequencing data ⬇️

artículo científico publicado el 29 de julio de 2011

Estrogen-mediated regulation of Igf1 transcription and uterine growth involves direct binding of estrogen receptor alpha to estrogen-responsive elements

artículo científico publicado en 2009

Gene assessment and sample classification for gene expression data using a genetic algorithm/k-nearest neighbor method.

artículo científico publicado en 2001

Gene expression profiling of rat livers reveals indicators of potential adverse effects.

artículo científico publicado en 2004

Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method ⬇️

artículo científico publicado el 1 de diciembre de 2001

Gene set enrichment analysis for non-monotone association and multiple experimental categories

artículo científico publicado en 2008

HNF4α regulates sulfur amino acid metabolism and confers sensitivity to methionine restriction in liver cancer

scientific article published on 07 August 2020

IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data.

artículo científico publicado en 2014

Id Proteins Suppress E2A-Driven Invariant Natural Killer T Cell Development prior to TCR Selection.

artículo científico publicado en 2018

Identification and analysis of murine pancreatic islet enhancers

artículo científico publicado en 2012

Identification and functional characterization of polymorphisms in human cyclooxygenase-1 (PTGS1).

artículo científico publicado en 2007

Identification of residues 286 and 289 as critical for conferring substrate specificity of human CYP2C9 for diclofenac and ibuprofen

artículo científico publicado en 1998

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

artículo científico publicado en 2010

Loss of Glis3 causes dysregulation of retrotransposon silencing and germ cell demise in fetal mouse testis.

artículo científico publicado en 2018

Mediator complex component MED13 regulates zygotic genome activation and is required for postimplantation development in the mouse.

artículo científico publicado en 2018

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

artículo científico publicado en 1999

Non-targeted urinary metabolomics in pregnancy and associations with fetal growth restriction

artículo científico publicado en 2020

Novel DNA motif binding activity observed in vivo with an estrogen receptor α mutant mouse

artículo científico publicado en 2014

Novel consensus DNA‐binding sequence for BRCA1 protein complexes ⬇️

artículo científico publicado el 1 de octubre de 2003

Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells

artículo científico publicado en 2008

PAVIS: a tool for Peak Annotation and Visualization.

artículo científico publicado en 2013

Post-transcriptional regulation of transcript abundance by a conserved member of the tristetraprolin family in Candida albicans

artículo científico publicado en 2015

Posttranscriptional Regulation of Cell-Cell Interaction Protein-Encoding Transcripts by Zfs1p in Schizosaccharomyces pombe ⬇️

artículo científico publicado el 20 de agosto de 2012

Prediction of solution structures of the Ca2+-bound gamma-carboxyglutamic acid domains of protein S and homolog growth arrest specific protein 6: use of the particle mesh Ewald method ⬇️

artículo científico publicado el 1 de octubre de 1997

Research resource: whole-genome estrogen receptor α binding in mouse uterine tissue revealed by ChIP-seq

artículo científico publicado en 2012

Role of γ-Carboxyglutamic Acid in the Calcium-Induced Structural Transition of Conantokin G, a Conotoxin from the Marine Snail Conus geographus, ⬇️

artículo científico publicado el 16 de diciembre de 1997

Sleep Apnea and Hypoventilation in Patients with Down Syndrome: Analysis of 144 Polysomnogram Studies

artículo científico publicado en 2017

The (1)H NMR structure of bovine Pb(2+)-osteocalcin and implications for lead toxicity

artículo científico publicado en 2008

The Drosophila Tis11 protein and its effects on mRNA expression in flies

artículo científico publicado en 2014

The Roles of Individual γ-Carboxyglutamate Residues in the Solution Structure and Cation-dependent Properties of Conantokin-T ⬇️

artículo científico publicado el 27 de marzo de 1998

The novel p53 target TNFAIP8 variant 2 is increased in cancer and offsets p53-dependent tumor suppression

artículo científico publicado en 2016

Transcriptional repression by the BRG1-SWI/SNF complex affects the pluripotency of human embryonic stem cells.

artículo científico publicado en 2014

Vertical-scanning mutagenesis of a critical tryptophan in the minor groove binding track of HIV-1 reverse transcriptase. Molecular nature of polymerase-nucleic acid interactions

artículo científico publicado en 1998

fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control

artículo científico publicado en 2008

p53 integrates host defense and cell fate during bacterial pneumonia ⬇️

artículo científico publicado el 29 de abril de 2013

Lista de obras de

A random-periods model for expression of cell-cycle genes.

ART: a next-generation sequencing read simulator.

An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq.

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data

Cloning of CYP2J2 gene and identification of functional polymorphisms

Conformational changes in conantokin-G induced upon binding of calcium and magnesium as revealed by NMR structural analysis.

DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas.

Deficiency of the placenta- and yolk sac-specific tristetraprolin family member ZFP36L3 identifies likely mRNA targets and an unexpected link to placental iron metabolism

Deuterium and its role in the machinery of evolution

Diethylstilbestrol (DES)-stimulated hormonal toxicity is mediated by ERα alteration of target gene methylation patterns and epigenetic modifiers (DNMT3A, MBD2, and HDAC2) in the mouse seminal vesicle

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.

Efficiently identifying genome-wide changes with next-generation sequencing data ⬇️

Estrogen-mediated regulation of Igf1 transcription and uterine growth involves direct binding of estrogen receptor alpha to estrogen-responsive elements

Gene assessment and sample classification for gene expression data using a genetic algorithm/k-nearest neighbor method.

Gene expression profiling of rat livers reveals indicators of potential adverse effects.

Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method ⬇️

Gene set enrichment analysis for non-monotone association and multiple experimental categories

HNF4α regulates sulfur amino acid metabolism and confers sensitivity to methionine restriction in liver cancer

IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data.

Id Proteins Suppress E2A-Driven Invariant Natural Killer T Cell Development prior to TCR Selection.

Identification and analysis of murine pancreatic islet enhancers

Identification and functional characterization of polymorphisms in human cyclooxygenase-1 (PTGS1).

Identification of residues 286 and 289 as critical for conferring substrate specificity of human CYP2C9 for diclofenac and ibuprofen

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

Loss of Glis3 causes dysregulation of retrotransposon silencing and germ cell demise in fetal mouse testis.

Mediator complex component MED13 regulates zygotic genome activation and is required for postimplantation development in the mouse.

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

Non-targeted urinary metabolomics in pregnancy and associations with fetal growth restriction

Novel DNA motif binding activity observed in vivo with an estrogen receptor α mutant mouse

Novel consensus DNA‐binding sequence for BRCA1 protein complexes ⬇️

Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells

PAVIS: a tool for Peak Annotation and Visualization.

Post-transcriptional regulation of transcript abundance by a conserved member of the tristetraprolin family in Candida albicans

Posttranscriptional Regulation of Cell-Cell Interaction Protein-Encoding Transcripts by Zfs1p in Schizosaccharomyces pombe ⬇️

Prediction of solution structures of the Ca2+-bound gamma-carboxyglutamic acid domains of protein S and homolog growth arrest specific protein 6: use of the particle mesh Ewald method ⬇️

Research resource: whole-genome estrogen receptor α binding in mouse uterine tissue revealed by ChIP-seq

Role of γ-Carboxyglutamic Acid in the Calcium-Induced Structural Transition of Conantokin G, a Conotoxin from the Marine Snail Conus geographus, ⬇️

Sleep Apnea and Hypoventilation in Patients with Down Syndrome: Analysis of 144 Polysomnogram Studies

The (1)H NMR structure of bovine Pb(2+)-osteocalcin and implications for lead toxicity

The Drosophila Tis11 protein and its effects on mRNA expression in flies

The Roles of Individual γ-Carboxyglutamate Residues in the Solution Structure and Cation-dependent Properties of Conantokin-T ⬇️

The novel p53 target TNFAIP8 variant 2 is increased in cancer and offsets p53-dependent tumor suppression

Transcriptional repression by the BRG1-SWI/SNF complex affects the pluripotency of human embryonic stem cells.

Vertical-scanning mutagenesis of a critical tryptophan in the minor groove binding track of HIV-1 reverse transcriptase. Molecular nature of polymerase-nucleic acid interactions

fdrMotif: identifying cis-elements by an EM algorithm coupled with false discovery rate control

p53 integrates host defense and cell fate during bacterial pneumonia ⬇️