Lista de obras - Chiara Romualdi - Dominio Público Uruguay

NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data

artículo científico publicado en 2022

A data-driven network model of primary myelofibrosis: transcriptional and post-transcriptional alterations in CD34+ cells.

artículo científico publicado en 2016

A global gene evolution analysis on Vibrionaceae family using phylogenetic profile.

artículo científico publicado en 2007

A prognostic regulatory pathway in stage I epithelial ovarian cancer: new hints for the poor prognosis assessment.

artículo científico publicado en 2016

A systems biology approach to characterize the regulatory networks leading to trabectedin resistance in an in vitro model of myxoid liposarcoma

artículo científico publicado en 2012

A systems biology approach to investigate the mechanism of action of trabectedin in a model of myelomonocytic leukemia

artículo científico publicado en 2016

A-MADMAN: annotation-based microarray data meta-analysis tool

artículo científico publicado en 2009

Aberrant DNA methylation profiles of inherited and sporadic colorectal cancer.

artículo científico publicado en 2015

Along signal paths: an empirical gene set approach exploiting pathway topology.

artículo científico publicado en 2012

An aberrant microRNA signature in childhood T-cell lymphoblastic lymphoma affecting CDKN1B expression, NOTCH1 and growth factor signaling pathways.

artículo científico publicado en 2014

Analysis of differential miRNA expression in primary tumor and stroma of colorectal cancer patients.

artículo científico publicado en 2014

Analysis of potential factors affecting allografts contamination at retrieval.

artículo científico publicado en 2017

Anticoagulant therapy for venous thromboembolism during pregnancy: a systematic review and a meta-analysis of the literature: a reply to a rebuttal.

artículo científico publicado en 2013

Antimicrobial use and microbiological testing in district general hospital ICUs of the Veneto region of north-east Italy

artículo científico publicado en 2016

Association between miR-200c and the survival of patients with stage I epithelial ovarian cancer: a retrospective study of two independent tumour tissue collections.

artículo científico publicado en 2011

Beneficial Bacteria Isolated from Grapevine Inner Tissues Shape Arabidopsis thaliana Roots

artículo científico publicado en 2015

BrewerIX enables allelic expression analysis of imprinted and X-linked genes from bulk and single-cell transcriptomes

artículo científico publicado en 2022

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

artículo científico publicado en 2015

Changes in Accident & Emergency Visits and Return Visits in Relation to the Enforcement of Daylight Saving Time and Photoperiod

scientific article published on 30 July 2018

Circulating Cell-Free DNA in Dogs with Mammary Tumors: Short and Long Fragments and Integrity Index

artículo científico publicado en 2017

Circulating miRNA landscape identifies miR-1246 as promising diagnostic biomarker in high-grade serous ovarian carcinoma: A validation across two independent cohorts

artículo científico publicado en 2016

Cognitive impairment predicts disability progression and cortical thinning in MS: An 8-year study

artículo científico publicado en 2016

Consequences of heat shock protein 72 (Hsp72) expression and activity on stress-induced apoptosis in CD30+ NPM-ALK+ anaplastic large-cell lymphomas.

artículo científico publicado en 2012

Cortical atrophy is relevant in multiple sclerosis at clinical onset.

artículo científico publicado en 2007

Cortical lesion load associates with progression of disability in multiple sclerosis.

artículo científico publicado en 2012

Cortical pathology in multiple sclerosis patients with epilepsy: a 3 year longitudinal study.

artículo científico publicado en 2011

Defining the gene expression signature of rhabdomyosarcoma by meta-analysis.

artículo científico publicado en 2006

Denervation in murine fast-twitch muscle: short-term physiological changes and temporal expression profiling

artículo científico publicado en 2006

Detection of cortical inflammatory lesions by double inversion recovery magnetic resonance imaging in patients with multiple sclerosis

artículo científico publicado en 2007

Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata).

artículo científico publicado en 2008

Development of mussel mRNA profiling: Can gene expression trends reveal coastal water pollution?

artículo científico publicado en 2006

Differential gene expression profiling in genetic and multifactorial cardiovascular diseases.

artículo científico publicado en 2006

Direct generation of human naive induced pluripotent stem cells from somatic cells in microfluidics

artículo científico publicado en 2018

Disentangling the microRNA regulatory milieu in multiple myeloma: integrative genomics analysis outlines mixed miRNA-TF circuits and pathway-derived networks modulated in t(4;14) patients.

artículo científico publicado en 2015

Evidence for relative cortical sparing in benign multiple sclerosis: a longitudinal magnetic resonance imaging study.

artículo científico publicado en 2008

Expression profiling characterization of laminin α-2 positive MDC

scientific article published on 25 September 2006

Expression profiling of skeletal muscle in young bulls treated with steroidal growth promoters.

artículo científico publicado en 2009

Filling gaps in PPAR-alpha signaling through comparative nutrigenomics analysis.

artículo científico publicado en 2009

Gene expression profiling identifies potential relevant genes in alveolar rhabdomyosarcoma pathogenesis and discriminatesPAX3-FKHR positive and negative tumors

article

Gene expression profiling in dysferlinopathies using a dedicated muscle microarray.

artículo científico publicado en 2002

Gene flow and genetic diversity: a comparison of freshwater bryozoan populations in Europe and North America.

artículo científico publicado en 2000

Gene set analysis exploiting the topology of a pathway.

artículo científico publicado en 2010

Global DNA methylation profiling uncovers distinct methylation patterns of protocadherin alpha4 in metastatic and non-metastatic rhabdomyosarcoma.

artículo científico publicado en 2016

Global analysis of gene expression in mineralizing fish vertebra-derived cell lines: new insights into anti-mineralogenic effect of vanadate

artículo científico publicado en 2011

Graphical modeling for gene set analysis: A critical appraisal.

artículo científico publicado en 2015

High IGFBP2 expression correlates with tumor severity in pediatric rhabdomyosarcoma

artículo científico publicado en 2011

IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.

artículo científico publicado en 2003

Identification of high-grade serous ovarian cancer miRNA species associated with survival and drug response in patients receiving neoadjuvant chemotherapy: a retrospective longitudinal analysis using matched tumor biopsies.

artículo científico publicado en 2016

Impact of host genes and strand selection on miRNA and miRNA* expression.

artículo científico publicado en 2011

Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.

artículo científico

Inflammatory intrathecal profiles and cortical damage in multiple sclerosis.

artículo científico publicado en 2018

Integration analysis of microRNA and mRNA expression profiles in human peripheral blood lymphocytes cultured in modeled microgravity.

artículo científico publicado en 2014

KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba).

artículo científico publicado en 2017

LINE-1 hypomethylation is associated to specific clinico-pathological features in Stage I non-small cell lung cancer

artículo científico publicado en 2017

Life at Depth: Photobacterium profundum Genome Sequence and Expression Analysis

artículo científico publicado en 2005

Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature

artículo científico publicado en 2014

Longitudinal analysis of immune cell phenotypes in early stage multiple sclerosis: distinctive patterns characterize MRI-active patients.

artículo científico publicado en 2006

Low degree of cortical pathology is associated with benign course of multiple sclerosis.

artículo científico publicado en 2012

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis

artículo científico publicado en 2010

MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).

artículo científico publicado en 2012

MIDAW: a web tool for statistical analysis of microarray data

artículo científico publicado en 2005

MiRNA landscape in stage I epithelial ovarian cancer defines the histotype specificities.

artículo científico publicado en 2013

Microbiota of the Therapeutic Euganean Thermal Muds with a Focus on the Main Cyanobacteria Species

artículo científico publicado en 2020

Microsatellite (GT)(n) is part of the von Willebrand factor (VWF) promoter region that influences the glucocorticoid-induced increase in VWF in Cushing's syndrome

artículo científico publicado en 2010

Microsatellite unstable gastrointestinal neuroendocrine carcinomas: a new clinicopathologic entity.

artículo científico publicado en 2014

NELL1, whose high expression correlates with negative outcomes, has different methylation patterns in alveolar and embryonal rhabdomyosarcoma

artículo científico publicado en 2017

Novel genes, possibly relevant for molecular diagnosis or therapy of human rhabdomyosarcoma, detected by genomic expression profiling.

artículo científico publicado en 2005

Paradoxical GH increase during OGTT is associated to first-generation somatostatin analogs responsiveness in acromegaly

scientific article published on 01 March 2019

Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms

artículo científico publicado en 2002

Pharmacogenetic score predicts overall survival, progression-free survival and platinum sensitivity in ovarian cancer

artículo científico publicado en 2020

Polymorphisms in von Willebrand factor gene promoter influence the glucocorticoid-induced increase in von Willebrand factor: the lesson learned from Cushing syndrome.

artículo científico publicado en 2008

Probability of conception on different days of the menstrual cycle: an ongoing exercise

scientific article published on 01 June 1997

Profiling cancer gene mutations in longitudinal epithelial ovarian cancer biopsies by targeted next-generation sequencing: a retrospective study.

artículo científico publicado en 2015

Prognostic relevance of aberrant DNA methylation in g1 and g2 pancreatic neuroendocrine tumors

artículo científico publicado en 2014

Pyrosequencing and de novo assembly of Antarctic krill (Euphausia superba) transcriptome to study the adaptability of krill to climate-induced environmental changes

artículo científico publicado en 2015

Regional Distribution and Evolution of Gray Matter Damage in Different Populations of Multiple Sclerosis Patients

artículo científico publicado en 2015

Resistance to platinum-based chemotherapy is associated with epithelial to mesenchymal transition in epithelial ovarian cancer

article

Revertant fibers in the mdx murine model of Duchenne muscular dystrophy: an age- and muscle-related reappraisal

artículo científico publicado en 2013

Ripening and genotype control stilbene accumulation in healthy grapes.

artículo científico publicado en 2008

Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data.

artículo científico publicado en 2016

Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices

artículo científico publicado en 2002

Single cell analysis reveals the involvement of the long non-coding RNA Pvt1 in the modulation of muscle atrophy and mitochondrial network

artículo científico publicado en 2019

Smokers and passive smokers gene expression profiles: Correlation with the DNA oxidation damage

article

SourceSet: A graphical model approach to identify primary genes in perturbed biological pathways

scientific article published on 25 October 2019

Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.

artículo científico publicado en 2011

Synthesis of mitochondrial DNA precursors during myogenesis, an analysis in purified C2C12 myotubes.

artículo científico publicado en 2013

Systems biology approach to the dissection of the complexity of regulatory networks in the S. scrofa cardiocirculatory system

artículo científico publicado en 2013

TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts.

artículo científico

The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways.

artículo científico publicado en 2011

The cortical damage, early relapses, and onset of the progressive phase in multiple sclerosis

scientific article published on 16 May 2018

The effect of fingolimod on focal and diffuse grey matter damage in active MS patients

artículo científico publicado en 2018

The self-morningness/eveningness (Self-ME): An extremely concise and totally subjective assessment of diurnal preference

artículo científico publicado en 2015

Tissue-specific expression and regulatory networks of pig microRNAome

artículo científico publicado en 2014

Transcriptional Characterization of Stage I Epithelial Ovarian Cancer: A Multicentric Study

scientific article published on 01 December 2019

Transcriptome Profiles of Human Visceral Adipocytes in Obesity and Colorectal Cancer Unravel the Effects of Body Mass Index and Polyunsaturated Fatty Acids on Genes and Biological Processes Related to Tumorigenesis

article

Transcriptomic Analysis of Single Isolated Myofibers Identifies miR-27a-3p and miR-142-3p as Regulators of Metabolism in Skeletal Muscle

scientific article published on 01 March 2019

Usefulness of the Total Thrombus-Formation Analysis System (T-TAS) in the diagnosis and characterization of von Willebrand disease.

artículo científico publicado en 2016

Widespread cortical thinning characterizes patients with MS with mild cognitive impairment.

artículo científico publicado en 2010

Wiring miRNAs to pathways: a topological approach to integrate miRNA and mRNA expression profiles

artículo científico publicado en 2014

Zebrafish Mutant Lines Reveal the Interplay between nr3c1 and nr3c2 in the GC-Dependent Regulation of Gene Transcription

artículo científico publicado en 2022

graphite - a Bioconductor package to convert pathway topology to gene network.

artículo científico publicado en 2012

lncRNAs as Novel Indicators of Patients' Prognosis in Stage I Epithelial Ovarian Cancer: A Retrospective and Multicentric Study.

artículo científico publicado en 2016

metaGraphite-a new layer of pathway annotation to get metabolite networks

scientific article published on 01 April 2019

miR148b is a major coordinator of breast cancer progression in a relapse-associated microRNA signature by targeting ITGA5, ROCK1, PIK3CA, NRAS, and CSF1.

artículo científico publicado en 2012

microRNA-181a has a critical role in ovarian cancer progression through the regulation of the epithelial-mesenchymal transition.

artículo científico publicado en 2014

parmigene--a parallel R package for mutual information estimation and gene network reconstruction.

artículo científico publicado en 2011

rs4143815-PDL1, a New Potential Immunogenetic Biomarker of Biochemical Recurrence in Locally Advanced Prostate Cancer after Radiotherapy.

artículo científico publicado en 2019

simPATHy: a new method for simulating data from perturbed biological PATHways

artículo científico publicado en 2017

Lista de obras de Chiara Romualdi

<i>NewWave</i>: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data

A data-driven network model of primary myelofibrosis: transcriptional and post-transcriptional alterations in CD34+ cells.

A global gene evolution analysis on Vibrionaceae family using phylogenetic profile.

A prognostic regulatory pathway in stage I epithelial ovarian cancer: new hints for the poor prognosis assessment.

A systems biology approach to characterize the regulatory networks leading to trabectedin resistance in an in vitro model of myxoid liposarcoma

A systems biology approach to investigate the mechanism of action of trabectedin in a model of myelomonocytic leukemia

A-MADMAN: annotation-based microarray data meta-analysis tool

Aberrant DNA methylation profiles of inherited and sporadic colorectal cancer.

Along signal paths: an empirical gene set approach exploiting pathway topology.

An aberrant microRNA signature in childhood T-cell lymphoblastic lymphoma affecting CDKN1B expression, NOTCH1 and growth factor signaling pathways.

Analysis of differential miRNA expression in primary tumor and stroma of colorectal cancer patients.

Analysis of potential factors affecting allografts contamination at retrieval.

Anticoagulant therapy for venous thromboembolism during pregnancy: a systematic review and a meta-analysis of the literature: a reply to a rebuttal.

Antimicrobial use and microbiological testing in district general hospital ICUs of the Veneto region of north-east Italy

Association between miR-200c and the survival of patients with stage I epithelial ovarian cancer: a retrospective study of two independent tumour tissue collections.

Beneficial Bacteria Isolated from Grapevine Inner Tissues Shape Arabidopsis thaliana Roots

BrewerIX enables allelic expression analysis of imprinted and X-linked genes from bulk and single-cell transcriptomes

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

Changes in Accident & Emergency Visits and Return Visits in Relation to the Enforcement of Daylight Saving Time and Photoperiod

Circulating Cell-Free DNA in Dogs with Mammary Tumors: Short and Long Fragments and Integrity Index

Circulating miRNA landscape identifies miR-1246 as promising diagnostic biomarker in high-grade serous ovarian carcinoma: A validation across two independent cohorts

Cognitive impairment predicts disability progression and cortical thinning in MS: An 8-year study

Consequences of heat shock protein 72 (Hsp72) expression and activity on stress-induced apoptosis in CD30+ NPM-ALK+ anaplastic large-cell lymphomas.

Cortical atrophy is relevant in multiple sclerosis at clinical onset.

Cortical lesion load associates with progression of disability in multiple sclerosis.

Cortical pathology in multiple sclerosis patients with epilepsy: a 3 year longitudinal study.

Defining the gene expression signature of rhabdomyosarcoma by meta-analysis.

Denervation in murine fast-twitch muscle: short-term physiological changes and temporal expression profiling

Detection of cortical inflammatory lesions by double inversion recovery magnetic resonance imaging in patients with multiple sclerosis

Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata).

Development of mussel mRNA profiling: Can gene expression trends reveal coastal water pollution?

Differential gene expression profiling in genetic and multifactorial cardiovascular diseases.

Direct generation of human naive induced pluripotent stem cells from somatic cells in microfluidics

Disentangling the microRNA regulatory milieu in multiple myeloma: integrative genomics analysis outlines mixed miRNA-TF circuits and pathway-derived networks modulated in t(4;14) patients.

Evidence for relative cortical sparing in benign multiple sclerosis: a longitudinal magnetic resonance imaging study.

Expression profiling characterization of laminin α-2 positive MDC

Expression profiling of skeletal muscle in young bulls treated with steroidal growth promoters.

Filling gaps in PPAR-alpha signaling through comparative nutrigenomics analysis.

Gene expression profiling identifies potential relevant genes in alveolar rhabdomyosarcoma pathogenesis and discriminatesPAX3-FKHR positive and negative tumors

Gene expression profiling in dysferlinopathies using a dedicated muscle microarray.

Gene flow and genetic diversity: a comparison of freshwater bryozoan populations in Europe and North America.

Gene set analysis exploiting the topology of a pathway.

Global DNA methylation profiling uncovers distinct methylation patterns of protocadherin alpha4 in metastatic and non-metastatic rhabdomyosarcoma.

Global analysis of gene expression in mineralizing fish vertebra-derived cell lines: new insights into anti-mineralogenic effect of vanadate

Graphical modeling for gene set analysis: A critical appraisal.

High IGFBP2 expression correlates with tumor severity in pediatric rhabdomyosarcoma

IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.

Identification of high-grade serous ovarian cancer miRNA species associated with survival and drug response in patients receiving neoadjuvant chemotherapy: a retrospective longitudinal analysis using matched tumor biopsies.

Impact of host genes and strand selection on miRNA and miRNA* expression.

Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.

Inflammatory intrathecal profiles and cortical damage in multiple sclerosis.

Integration analysis of microRNA and mRNA expression profiles in human peripheral blood lymphocytes cultured in modeled microgravity.

KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba).

LINE-1 hypomethylation is associated to specific clinico-pathological features in Stage I non-small cell lung cancer

Life at Depth: Photobacterium profundum Genome Sequence and Expression Analysis

Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature

Longitudinal analysis of immune cell phenotypes in early stage multiple sclerosis: distinctive patterns characterize MRI-active patients.

Low degree of cortical pathology is associated with benign course of multiple sclerosis.

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis

MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).

MIDAW: a web tool for statistical analysis of microarray data

MiRNA landscape in stage I epithelial ovarian cancer defines the histotype specificities.

Microbiota of the Therapeutic Euganean Thermal Muds with a Focus on the Main Cyanobacteria Species

Microsatellite (GT)(n) is part of the von Willebrand factor (VWF) promoter region that influences the glucocorticoid-induced increase in VWF in Cushing's syndrome

Microsatellite unstable gastrointestinal neuroendocrine carcinomas: a new clinicopathologic entity.

NELL1, whose high expression correlates with negative outcomes, has different methylation patterns in alveolar and embryonal rhabdomyosarcoma

Novel genes, possibly relevant for molecular diagnosis or therapy of human rhabdomyosarcoma, detected by genomic expression profiling.

Paradoxical GH increase during OGTT is associated to first-generation somatostatin analogs responsiveness in acromegaly

Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms

Pharmacogenetic score predicts overall survival, progression-free survival and platinum sensitivity in ovarian cancer

Polymorphisms in von Willebrand factor gene promoter influence the glucocorticoid-induced increase in von Willebrand factor: the lesson learned from Cushing syndrome.

Probability of conception on different days of the menstrual cycle: an ongoing exercise

Profiling cancer gene mutations in longitudinal epithelial ovarian cancer biopsies by targeted next-generation sequencing: a retrospective study.

Prognostic relevance of aberrant DNA methylation in g1 and g2 pancreatic neuroendocrine tumors

Pyrosequencing and de novo assembly of Antarctic krill (Euphausia superba) transcriptome to study the adaptability of krill to climate-induced environmental changes

Regional Distribution and Evolution of Gray Matter Damage in Different Populations of Multiple Sclerosis Patients

Resistance to platinum-based chemotherapy is associated with epithelial to mesenchymal transition in epithelial ovarian cancer

Revertant fibers in the mdx murine model of Duchenne muscular dystrophy: an age- and muscle-related reappraisal

Ripening and genotype control stilbene accumulation in healthy grapes.