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Lista de obras de John Bachman

Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature

artículo científico publicado en 2020

Author-sourced capture of pathway knowledge in computable form using Biofactoid

artículo científico

Automated assembly of molecular mechanisms at scale from text mining and curated databases

preprint published on 31 August 2022

BID preferentially activates BAK while BIM preferentially activates BAX, affecting chemotherapy response

artículo científico publicado en 2013

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms ⬇️

artículo científico

Capturing scientific knowledge in computable form

artículo científico publicado en 2021

FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining.

artículo científico publicado en 2018

From word models to executable models of signaling networks using automated assembly.

artículo científico publicado en 2017

Fundamental trade-offs between information flow in single cells and cellular populations.

artículo científico publicado en 2017

GeneWalk identifies relevant gene functions for a biological context using network representation learning

artículo científico

INDRA-IPM: interactive pathway modeling using natural language with automated assembly

scientific article published on 01 November 2019

Integrated Network and Dynamical Reasoning Assembler

Text mining and systems biology modeling software

Maintenance and Enrichment of Disease Maps in Biological Expression Language ⬇️

conference poster

New approaches to modeling complex biochemistry ⬇️

artículo científico publicado el 1 de febrero de 2011

Optimizing ring assembly reveals the strength of weak interactions

artículo científico publicado en 2012

Programming biological models in Python using PySB

artículo científico publicado en 2013

ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs ⬇️

Re-curation and Rational Enrichment of Knowledge Graphs in Biological Expression Language

BioRxiv article

Re-curation and rational enrichment of knowledge graphs in Biological Expression Language.

artículo científico publicado en 2019

STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs

preprint published on 18 August 2021

STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs

artículo científico publicado en 2022

Synthetic Lethal Interaction of SHOC2 Depletion with MEK Inhibition in RAS-Driven Cancers

scientific article published on 01 October 2019

shinyDepMap, a tool to identify targetable cancer genes and their functional connections from Cancer Dependency Map data

artículo científico

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