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Lista de obras de Fumio Matsuda

(13)C-metabolic flux analysis in S-adenosyl-L-methionine production by Saccharomyces cerevisiae

artículo científico publicado en 2015

13C metabolic flux analysis clarifies distinct metabolic phenotypes of cancer cell spheroid mimicking tumor hypoxia

artículo científico publicado en 2022

13C-metabolic flux analysis for mevalonate-producing strain of Escherichia coli.

artículo científico publicado en 2016

13C-metabolic flux analysis of ethanol-assimilating Saccharomyces cerevisiae for S-adenosyl-L-methionine production.

artículo científico publicado en 2018

A Highly Specific Genome-Wide Association Study Integrated with Transcriptome Data Reveals the Contribution of Copy Number Variations to Specialized Metabolites in Arabidopsis thaliana Accessions

artículo científico publicado en 2017

A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis

artículo científico publicado en 2009

A pyruvate carbon flux tugging strategy for increasing 2,3-butanediol production and reducing ethanol subgeneration in the yeast Saccharomyces cerevisiae.

artículo científico publicado en 2018

Absolute quantitation of glycolytic intermediates reveals thermodynamic shifts in Saccharomyces cerevisiae strains lacking PFK1 or ZWF1 genes

artículo científico publicado en 2015

Acetate-mediated novel survival strategy against drought in plants.

artículo científico publicado en 2017

Application of adaptive laboratory evolution to overcome a flux limitation in an Escherichia coli production strain.

artículo científico publicado en 2018

Application of gene targeting to designed mutation breeding of high-tryptophan rice

artículo científico publicado en 2011

Aqueous size-exclusion chromatographic method for the quantification of cyanobacterial native glycogen.

artículo científico publicado en 2013

Assessment of Protein Content and Phosphorylation Level in Synechocystis sp. PCC 6803 under Various Growth Conditions Using Quantitative Phosphoproteomic Analysis

artículo científico publicado en 2020

Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches

artículo científico publicado en 2009

AtMetExpress development: a phytochemical atlas of Arabidopsis development ⬇️

article

Automated Recommendation of Research Keywords from PubMed That Suggest the Molecular Mechanism Associated with Biomarker Metabolites

artículo científico publicado en 2022

Changes in Lignin and Polysaccharide Components in 13 Cultivars of Rice Straw following Dilute Acid Pretreatment as Studied by Solution-State 2D 1H-13C NMR.

artículo científico publicado en 2015

Changes in primary and secondary metabolite levels in response to gene targeting-mediated site-directed mutagenesis of the anthranilate synthase gene in rice

artículo científico publicado en 2012

Characterization of tryptophan-overproducing potato transgenic for a mutant rice anthranilate synthase alpha-subunit gene (OASA1D).

artículo científico publicado en 2005

Cocktail δ-integration of xylose assimilation genes for efficient ethanol production from xylose in Saccharomyces cerevisiae

artículo científico publicado en 2013

Comparative Targeted Proteomics of the Central Metabolism and Photosystems in SigE Mutant Strains of Synechocystis sp. PCC 6803

artículo científico publicado en 2018

Comparative analysis of fermentation and enzyme expression profiles among industrial Saccharomyces cerevisiae strains

artículo científico publicado en 2018

Comparative profiling analysis of central metabolites in Euglena gracilis under various cultivation conditions

artículo científico publicado en 2011

Comparison of metabolic profiles of yeasts based on the difference of the Crabtree positive and negative

artículo científico publicado en 2019

Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis

artículo científico publicado en 2008

Computational data mining method for isotopomer analysis in the quantitative assessment of metabolic reprogramming

scientific article published on 14 January 2020

Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis

artículo científico publicado en 2010

Constitutive expression of the global regulator AbrB restores the growth defect of a genome-reduced Bacillus subtilis strain and improves its metabolite production

artículo científico publicado en 2022

Construction of an Artificial Pathway for Isobutanol Biosynthesis in the Cytosol of Saccharomyces cerevisiae

artículo científico publicado en 2012

Conversion of Mevalonate to Isoprenol Using Light Energy in <i>Escherichia coli</i> without Consuming Sugars for ATP Supply

artículo científico publicado en 2022

Covering chemical diversity of genetically-modified tomatoes using metabolomics for objective substantial equivalence assessment

artículo científico publicado en 2011

Current metabolomics: practical applications

artículo científico

Data science-based modeling of the lysine fermentation process

scientific article published on 21 July 2020

Development of microbial cell factories for bio-refinery through synthetic bioengineering

artículo científico publicado en 2012

Differences in glucose yield of residues from among varieties of rice, wheat, and sorghum after dilute acid pretreatment

artículo científico publicado en 2017

Direct and quantitative analysis of altered metabolic flux distributions and cellular ATP production pathway in fumarate hydratase-diminished cells

artículo científico publicado en 2020

Display of active beta-glucosidase on the surface of Schizosaccharomyces pombe cells using novel anchor proteins

scientific article published on 06 February 2013

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis

artículo científico publicado en 2012

Drought Stress Responses in Context-Specific Genome-Scale Metabolic Models of Arabidopsis thaliana

artículo científico publicado en 2020

Effects of freeze-drying of samples on metabolite levels in metabolome analyses

artículo científico publicado en 2011

Effects of mutations of GID protein-coding genes on malate production and enzyme expression profiles in Saccharomyces cerevisiae

scientific article published on 04 April 2020

Efficient fermentation of xylose to ethanol at high formic acid concentrations by metabolically engineered Saccharomyces cerevisiae

artículo científico publicado en 2011

Eliminating the isoleucine biosynthetic pathway to reduce competitive carbon outflow during isobutanol production by Saccharomyces cerevisiae

artículo científico publicado en 2015

Engineering strategy of yeast metabolism for higher alcohol production

artículo científico

Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids

artículo científico publicado en 2014

Enzymatic glutathione production using metabolically engineered Saccharomyces cerevisiae as a whole-cell biocatalyst

artículo científico publicado en 2011

Erratum: Acetate-mediated novel survival strategy against drought in plants

artículo científico publicado en 2017

Evaluation of Brachypodium distachyon L-Tyrosine Decarboxylase Using L-Tyrosine Over-Producing Saccharomyces cerevisiae

artículo científico publicado en 2015

Evaluation of control mechanisms for Saccharomyces cerevisiae central metabolic reactions using metabolome data of eight single-gene deletion mutants

artículo científico publicado en 2012

Evolutionary approach for improved proton pumping activity of heterologous rhodopsin expressed in Escherichia coli

artículo científico publicado en 2022

Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics

artículo científico publicado en 2011

Expression of Saccharomyces cerevisiae cDNAs to enhance the growth of non-ethanol-producing S. cerevisiae strains lacking pyruvate decarboxylases.

artículo científico publicado en 2018

Expression of bacterial tyrosine ammonia-lyase creates a novel p-coumaric acid pathway in the biosynthesis of phenylpropanoids in Arabidopsis

artículo científico publicado en 2010

Fake metabolomics chromatogram generation for facilitating deep learning of peak-picking neural networks

artículo científico publicado en 2020

Fragmentation of Dicarboxylic and Tricarboxylic Acids in the Krebs Cycle Using GC-EI-MS and GC-EI-MS/MS

artículo científico publicado en 2019

GC-MS/MS survey of collision-induced dissociation of tert-butyldimethylsilyl-derivatized amino acids and its application to (13)C-metabolic flux analysis of Escherichia coli central metabolism

artículo científico publicado en 2016

Genetic engineering to enhance the Ehrlich pathway and alter carbon flux for increased isobutanol production from glucose by Saccharomyces cerevisiae ⬇️

artículo científico publicado el 9 de febrero de 2012

Glucose content in the liquid hydrolysate after dilute acid pretreatment is affected by the starch content in rice straw

artículo científico publicado en 2013

Heterologous expression of bacterial phosphoenol pyruvate carboxylase and Entner-Doudoroff pathway in Saccharomyces cerevisiae for improvement of isobutanol production.

artículo científico publicado en 2017

High-level tryptophan accumulation in seeds of transgenic rice and its limited effects on agronomic traits and seed metabolite profile

artículo científico publicado en 2006

Implementation of a transhydrogenase-like shunt to counter redox imbalance during xylose fermentation in Saccharomyces cerevisiae

artículo científico publicado en 2012

Increased biomass production and glycogen accumulation in apcE gene deleted Synechocystis sp. PCC 6803

artículo científico publicado en 2014

Increased carvone production in Escherichia coli by balancing limonene conversion enzyme expression via targeted quantification concatamer proteome analysis

artículo científico publicado en 2021

Increased isobutanol production in Saccharomyces cerevisiae by eliminating competing pathways and resolving cofactor imbalance ⬇️

scientific article published on 05 December 2013

Integrated metabolic flux and omics analysis of Synechocystis sp. PCC 6803 under mixotrophic and photoheterotrophic conditions

artículo científico publicado en 2014

Integrated metabolomic and transcriptomic analyses of high-tryptophan rice expressing a mutant anthranilate synthase alpha subunit

artículo científico publicado en 2007

Inter-Laboratory Comparison of Metabolite Measurements for Metabolomics Data Integration

artículo científico publicado en 2019

Investigation of useful carbon tracers for 13C-metabolic flux analysis of Escherichia coli by considering five experimentally determined flux distributions.

artículo científico publicado en 2016

Isotope Calculation Gadgets: A Series of Software for Isotope-Tracing Experiments in Garuda Platform

artículo científico publicado en 2022

Learning from quantitative data to understand central carbon metabolism.

artículo científico publicado en 2017

Lipoprotein profiling methodology based on determination of apolipoprotein concentration.

artículo científico publicado en 2017

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

artículo científico publicado en 2009

Magnesium starvation improves production of malonyl-CoA-derived metabolites in Escherichia coli

artículo científico publicado en 2018

Mass Spectrometry-Based Method to Study Inhibitor-Induced Metabolic Redirection in the Central Metabolism of Cancer Cells.

artículo científico publicado en 2018

Mass spectra-based framework for automated structural elucidation of metabolome data to explore phytochemical diversity

artículo científico publicado en 2011

MassBank: a public repository for sharing mass spectral data for life sciences

artículo científico publicado en 2010

Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis

artículo científico publicado en 2009

Metabolic Adaptation to Nutritional Stress in Human Colorectal Cancer.

artículo científico publicado en 2016

Metabolic Flux Analysis of the Synechocystis sp. PCC 6803 ΔnrtABCD Mutant Reveals a Mechanism for Metabolic Adaptation to Nitrogen-Limited Conditions

artículo científico publicado en 2017

Metabolic Flux Analysis of the Synechocystis sp. PCC 6803 ΔnrtABCD Mutant Reveals a Mechanism for Metabolic Adaptation to Nitrogen-Limited Conditions.

artículo científico publicado en 2017

Metabolic characterization of cultured mammalian cells by mass balance analysis, tracer labeling experiments and computer-aided simulations.

artículo científico publicado en 2015

Metabolic engineering of isopropyl alcohol-producing Escherichia coli strains with 13 C-metabolic flux analysis.

artículo científico publicado en 2017

Metabolic engineering of mevalonate-producing Escherichia coli strains based on thermodynamic analysis

artículo científico publicado en 2018

Metabolic flux analysis of the phenylpropanoid pathway in elicitor-treated potato tuber tissue

artículo científico publicado en 2005

Metabolic flux of the oxidative pentose phosphate pathway under low light conditions in Synechocystis sp. PCC 6803

artículo científico publicado en 2018

Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants

artículo científico publicado en 2010

Metabolic profiling of tryptophan-overproducing rice calli that express a feedback-insensitive alpha subunit of anthranilate synthase

artículo científico publicado en 2005

Metabolism of avenanthramide phytoalexins in oats

artículo científico publicado en 2004

Metabolome analysis of Saccharomyces cerevisiae and optimization of culture medium for S-adenosyl-L-methionine production

artículo científico publicado en 2016

Metabolome analysis of metabolic burden in Escherichia coli caused by overexpression of green fluorescent protein and delta-rhodopsin

artículo científico publicado en 2024

Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism

artículo científico publicado en 2014

Metabolomics for functional genomics, systems biology, and biotechnology

artículo científico publicado en 2010

Metabolomics of a single vacuole reveals metabolic dynamism in an alga Chara australis

article by Akira Oikawa et al published October 2011 in Plant Physiology

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light

artículo científico publicado en 2011

Molecular Components of Arabidopsis Intact Vacuoles Clarified with Metabolomic and Proteomic Analyses

artículo científico publicado en 2018

Mutation of a rice gene encoding a phenylalanine biosynthetic enzyme results in accumulation of phenylalanine and tryptophan

artículo científico publicado en 2008

Mutations in hik26 and slr1916 lead to high-light stress tolerance in Synechocystis sp. PCC6803

artículo científico publicado en 2021

Nano-scale liquid chromatography coupled to tandem mass spectrometry using the multiple reaction monitoring mode based quantitative platform for analyzing multiple enzymes associated with central metabolic pathways of Saccharomyces cerevisiae using

artículo científico publicado en 2014

Novel allosteric inhibition of phosphoribulokinase identified by ensemble kinetic modeling of <i>Synechocystis</i> sp. PCC 6803 metabolism

artículo científico publicado en 2020

OpenMebius: an open source software for isotopically nonstationary 13C-based metabolic flux analysis.

artículo científico publicado en 2014

Organosolv pretreatment of sorghum bagasse using a low concentration of hydrophobic solvents such as 1-butanol or 1-pentanol

artículo científico publicado en 2016

Overexpressing enzymes of the Ehrlich pathway and deleting genes of the competing pathway in Saccharomyces cerevisiae for increasing 2-phenylethanol production from glucose

artículo científico publicado en 2016

PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation

artículo científico publicado en 2013

Positive effects of proline addition on the central metabolism of wild-type and lactic acid-producing Saccharomyces cerevisiae strains

artículo científico publicado en 2016

Precipitate obtained following membrane separation of hydrothermally pretreated rice straw liquid revealed by 2D NMR to have high lignin content.

artículo científico publicado en 2015

Prediction of Hopeless Peptides Unlikely to be Selected for Targeted Proteome Analysis

artículo científico publicado en 2017

Production of indole alkaloids by metabolic engineering of the tryptophan pathway in rice

artículo científico publicado en 2013

Quantification of indole-3-acetic acid and amino acid conjugates in rice by liquid chromatography-electrospray ionization-tandem mass spectrometry

artículo científico publicado en 2005

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

artículo científico publicado en 2012

Regulation of central carbon metabolism in Saccharomyces cerevisiae by metabolic inhibitors

artículo científico publicado en 2013

Repeated-batch fermentation of lignocellulosic hydrolysate to ethanol using a hybrid Saccharomyces cerevisiae strain metabolically engineered for tolerance to acetic and formic acids

artículo científico publicado en 2011

Repression of mitochondrial metabolism for cytosolic pyruvate-derived chemical production in Saccharomyces cerevisiae

artículo científico publicado en 2019

Rewiring of embryonic glucose metabolism via suppression of PFK-1 and aldolase during mouse chorioallantoic branching

artículo científico publicado en 2017

Rice Metabolomics

Rre37 stimulates accumulation of 2-oxoglutarate and glycogen under nitrogen starvation in Synechocystis sp. PCC 6803.

artículo científico publicado en 2013

Seed-coat protective neolignans are produced by the dirigent protein AtDP1 and the laccase AtLAC5 in Arabidopsis

artículo científico publicado en 2021

Sugar phosphate analysis with baseline separation and soft ionization by gas chromatography-negative chemical ionization-mass spectrometry improves flux estimation of bidirectional reactions in cancer cells

scientific article published on 01 September 2018

Survival of membrane-damaged Escherichia coli in a cytosol-mimicking solution

artículo científico publicado en 2019

Synergistic enhancement of glycogen production in Arthrospira platensis by optimization of light intensity and nitrate supply

artículo científico publicado en 2012

Targeted proteome analysis of microalgae under high-light conditions by optimized protein extraction of photosynthetic organisms

artículo científico publicado en 2018

Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism

artículo científico publicado en 2017

The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production

artículo científico publicado en 2008

Theophylline-inducible riboswitch accurately regulates protein expression at low level in Escherichia coli

scientific article published on 05 April 2019

Three gene expression vector sets for concurrently expressing multiple genes in Saccharomyces cerevisiae

artículo científico publicado en 2014

Time-resolved analysis of short term metabolic adaptation at dark transition in Synechocystis sp. PCC 6803

scientific article published on 10 April 2019

Toward the complete utilization of rice straw: Methane fermentation and lignin recovery by a combinational process involving mechanical milling, supporting material and nanofiltration

artículo científico publicado en 2016

Transcriptome analysis of the cyanobacterium Synechocystis sp. PCC 6803 and mechanisms of photoinhibition tolerance under extreme high light conditions

artículo científico publicado en 2018

Transomics data-driven, ensemble kinetic modeling for system-level understanding and engineering of the cyanobacteria central metabolism

artículo científico publicado en 2019

Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana

artículo científico publicado en 2012

Utilization of lactic acid bacterial genes in Synechocystis sp. PCC 6803 in the production of lactic acid.

artículo científico publicado en 2013

Variation in biomass properties among rice diverse cultivars

scientific article published on 07 August 2011

Visualization of metabolite identifier information

Wickerhamiella bidentis sp. nov., a novel yeast species isolated from flowers and insects in Japan

scientific article published in 2023

Widely targeted metabolic profiling analysis of yeast central metabolites

artículo científico publicado en 2012

mfapy: An open-source Python package for 13C-based metabolic flux analysis

artículo científico publicado en 2021

¹³C-based metabolic flux analysis of Saccharomyces cerevisiae with a reduced Crabtree effect

artículo científico publicado en 2015

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