Lista de obras - Vitor Martins dos Santos

A multi-platform flow device for microbial (co-) cultivation and microscopic analysis

artículo científico publicado en 2012

An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida

artículo científico publicado en 2020

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

artículo científico publicado en 2015

Combining Genetic Circuit and Microbial Growth Kinetic Models: A Challenge for Biological Modelling

Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation

artículo científico publicado en 2017

Context matters: On the road to responsible biosafety technologies in synthetic biology

artículo científico publicado en 2020

Design and analysis of a tunable synchronized oscillator

artículo científico publicado en 2013

Efficient Reconstruction of Predictive Consensus Metabolic Network Models.

artículo científico publicado en 2016

Establishing the ELIXIR Microbiome Community

artículo científico publicado en 2024

Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction ⬇️

artículo científico publicado el 25 de mayo de 2011

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

artículo científico publicado en 2016

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome

artículo científico publicado en 2021

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

artículo científico publicado en 2006

Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle

artículo científico publicado en 2017

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.

artículo científico publicado en 2017

Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei

artículo científico publicado en 2016

Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger

artículo científico publicado en 2016

Improving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid

article

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions

artículo científico publicado en 2019

Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy

artículo científico publicado en 2016

Integrated Univariate, Multivariate, and Correlation-Based Network Analyses Reveal Metabolite-Specific Effects on Bacterial Growth and Biofilm Formation in Necrotizing Soft Tissue Infections

scientific article published on 14 January 2020

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis

artículo científico publicado en 2014

Linking genes to microbial growth kinetics: an integrated biochemical systems engineering approach.

artículo científico publicado en 2011

Model reduction of genome-scale metabolic models as a basis for targeted kinetic models

artículo científico publicado en 2021

Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media

artículo científico publicado en 2020

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida

artículo científico publicado en 2012

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

artículo científico publicado en 2015

Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life.

artículo científico publicado en 2017

Programmable bacterial catalysis - designing cells for biosynthesis of value-added compounds.

artículo científico publicado en 2012

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.

artículo científico publicado en 2016

Pseudomonas putida KT2440 is HV1 certified, not GRAS

scientific article published on 14 June 2019

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

artículo científico publicado en 2015

SEVA 3.1: enabling interoperability of DNA assembly among the SEVA, BioBricks and Type IIS restriction enzyme standards

artículo científico publicado en 2020

Systems Biology in ELIXIR: modelling in the spotlight

artículo científico publicado en 2024

Systems biology at work

artículo científico publicado en 2010

Systems biology of the gut: the interplay of food, microbiota and host at the mucosal interface.

artículo científico publicado en 2010

Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets

artículo científico publicado en 2014

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms

artículo científico publicado en 2011

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

artículo científico publicado en 2008

The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid.

artículo científico publicado en 2010

Lista de obras de Vitor Martins dos Santos

A multi-platform flow device for microbial (co-) cultivation and microscopic analysis

An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

Combining Genetic Circuit and Microbial Growth Kinetic Models: A Challenge for Biological Modelling

Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation

Context matters: On the road to responsible biosafety technologies in synthetic biology

Design and analysis of a tunable synchronized oscillator

Efficient Reconstruction of Predictive Consensus Metabolic Network Models.

Establishing the ELIXIR Microbiome Community

Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction ⬇️

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle

Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.

Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei

Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger

Improving the prediction of Pseudomonas putida mt-2 growth kinetics with the use of a gene expression regulation model of the TOL plasmid

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions

Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy

Integrated Univariate, Multivariate, and Correlation-Based Network Analyses Reveal Metabolite-Specific Effects on Bacterial Growth and Biofilm Formation in Necrotizing Soft Tissue Infections

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis

Linking genes to microbial growth kinetics: an integrated biochemical systems engineering approach.

Model reduction of genome-scale metabolic models as a basis for targeted kinetic models

Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life.

Programmable bacterial catalysis - designing cells for biosynthesis of value-added compounds.

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.

Pseudomonas putida KT2440 is HV1 certified, not GRAS

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

SEVA 3.1: enabling interoperability of DNA assembly among the SEVA, BioBricks and Type IIS restriction enzyme standards

Systems Biology in ELIXIR: modelling in the spotlight

Systems biology at work

Systems biology of the gut: the interplay of food, microbiota and host at the mucosal interface.

Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid.