Lista de obras -

A human breast cancer-derived xenograft and organoid platform for drug discovery and precision oncology

artículo científico publicado en 2022

A systematic approach to identify functional motifs within vertebrate developmental enhancers.

artículo científico publicado en 2009

Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation

artículo científico publicado en 2016

Alterations in the Rho pathway contribute to Epstein-Barr virus-induced lymphomagenesis in immunosuppressed environments.

artículo científico publicado en 2018

Anomalous dynamics of translocation

article

BMP signaling mediates glioma stem cell quiescence and confers treatment resistance in glioblastoma

artículo científico publicado en 2019

Brain mitochondrial lipid abnormalities in mice susceptible to spontaneous gliomas.

artículo científico publicado en 2008

CCNE1 amplification is associated with poor prognosis in patients with triple negative breast cancer

artículo científico publicado en 2019

Cardiolipin and electron transport chain abnormalities in mouse brain tumor mitochondria: lipidomic evidence supporting the Warburg theory of cancer

artículo científico publicado en 2008

Clinical and Immunological Implications of Frameshift Mutations in Lung Cancer

scientific article published on 22 June 2019

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens

artículo científico publicado en 2017

CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences

artículo científico publicado en 2012

Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts

scientific article published on 07 January 2021

Data from Treating Cancer as an Invasive Species

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

artículo científico publicado en 2020

Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power

scientific article published on 30 July 2018

Dynamic simulation of cardiolipin remodeling: greasing the wheels for an interpretative approach to lipidomics.

artículo científico publicado en 2010

Expression divergence measured by transcriptome sequencing of four yeast species ⬇️

artículo científico publicado el 29 de diciembre de 2011

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors

artículo científico publicado en 2019

Free energy self-averaging in protein-sized random heteropolymers

scientific article published on 27 July 2001

Frustrations in polymer conformation in gels and their minimization through molecular imprinting.

artículo científico publicado en 2000

Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome

artículo científico publicado en 2004

Functional chromatin features are associated with structural mutations in cancer

artículo científico publicado en 2014

Genetic Architectures of Quantitative Variation in RNA Editing Pathways

artículo científico publicado en 2015

Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

artículo científico publicado en 2019

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts

artículo científico publicado en 2018

Integrating chemical footprinting data into RNA secondary structure prediction ⬇️

artículo científico publicado el 16 de octubre de 2012

Loss of tumor suppressive microRNA-31 enhances TRADD/NF-κB signaling in glioblastoma

artículo científico publicado en 2015

Mutations in DNA repair genes are associated with increased neo-antigen load and activated T cell infiltration in lung adenocarcinoma.

artículo científico publicado en 2017

Mutations in DNA repair genes are associated with increased neoantigen burden and a distinct immunophenotype in lung squamous cell carcinoma

article

RNA function. Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration.

artículo científico publicado en 2014

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.

artículo científico publicado en 2018

Similarity of synonymous substitution rates across mammalian genomes

artículo científico publicado en 2007

Statistical Analysis of the Processes Controlling Choline and Ethanolamine Glycerophospholipid Molecular Species Composition ⬇️

artículo científico publicado el 25 de mayo de 2012

Systematic Establishment of Robustness and Standards in Patient-Derived Xenograft Experiments and Analysis

artículo científico publicado en 2020

The importance of being cis: evolution of orthologous fish and mammalian enhancer activity.

artículo científico publicado en 2010

The tandem duplicator phenotype as a distinct genomic configuration in cancer

artículo científico publicado en 2016

Transcriptional Enhancers in Protein-Coding Exons of Vertebrate Developmental Genes ⬇️

artículo científico publicado el 2 de mayo de 2012

Treating Cancer as an Invasive Species

artículo científico publicado en 2019

Uncertainties in tumor allele frequencies limit power to infer evolutionary pressures

artículo científico publicado en 2017

Unstable Genome and Transcriptome Dynamics during Tumor Metastasis Contribute to Therapeutic Heterogeneity in Colorectal Cancers

scientific article published on 22 January 2019

Whole-exome sequencing capture kit biases yield false negative mutation calls in TCGA cohorts

artículo científico publicado en 2018

cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation.

artículo científico publicado en 2008

Lista de obras de

A human breast cancer-derived xenograft and organoid platform for drug discovery and precision oncology

A systematic approach to identify functional motifs within vertebrate developmental enhancers.

Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation

Alterations in the Rho pathway contribute to Epstein-Barr virus-induced lymphomagenesis in immunosuppressed environments.

Anomalous dynamics of translocation

BMP signaling mediates glioma stem cell quiescence and confers treatment resistance in glioblastoma

Brain mitochondrial lipid abnormalities in mice susceptible to spontaneous gliomas.

CCNE1 amplification is associated with poor prognosis in patients with triple negative breast cancer

Cardiolipin and electron transport chain abnormalities in mouse brain tumor mitochondria: lipidomic evidence supporting the Warburg theory of cancer

Clinical and Immunological Implications of Frameshift Mutations in Lung Cancer

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens

CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences

Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts

Data from Treating Cancer as an Invasive Species

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power

Dynamic simulation of cardiolipin remodeling: greasing the wheels for an interpretative approach to lipidomics.

Expression divergence measured by transcriptome sequencing of four yeast species ⬇️

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors

Free energy self-averaging in protein-sized random heteropolymers

Frustrations in polymer conformation in gels and their minimization through molecular imprinting.

Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome

Functional chromatin features are associated with structural mutations in cancer

Genetic Architectures of Quantitative Variation in RNA Editing Pathways

Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts

Integrating chemical footprinting data into RNA secondary structure prediction ⬇️

Loss of tumor suppressive microRNA-31 enhances TRADD/NF-κB signaling in glioblastoma

Mutations in DNA repair genes are associated with increased neo-antigen load and activated T cell infiltration in lung adenocarcinoma.

Mutations in DNA repair genes are associated with increased neoantigen burden and a distinct immunophenotype in lung squamous cell carcinoma

RNA function. Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration.

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.

Similarity of synonymous substitution rates across mammalian genomes

Statistical Analysis of the Processes Controlling Choline and Ethanolamine Glycerophospholipid Molecular Species Composition ⬇️

Systematic Establishment of Robustness and Standards in Patient-Derived Xenograft Experiments and Analysis

The importance of being cis: evolution of orthologous fish and mammalian enhancer activity.

The tandem duplicator phenotype as a distinct genomic configuration in cancer

Transcriptional Enhancers in Protein-Coding Exons of Vertebrate Developmental Genes ⬇️

Treating Cancer as an Invasive Species

Uncertainties in tumor allele frequencies limit power to infer evolutionary pressures

Unstable Genome and Transcriptome Dynamics during Tumor Metastasis Contribute to Therapeutic Heterogeneity in Colorectal Cancers

Whole-exome sequencing capture kit biases yield false negative mutation calls in TCGA cohorts

cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation.