Lista de obras - Joseph Hughes - Dominio Público Uruguay

Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds

article

Avian UCP: the killjoy in the evolution of the mitochondrial uncoupling proteins

artículo científico publicado en 2007

Bioinformatics tools for analysing viral genomic data

artículo científico publicado en 2016

Characterization of a second open reading frame in genome segment 10 of bluetongue virus

artículo científico publicado en 2015

Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

artículo científico publicado en 2021

Comparative tests of ectoparasite species richness in seabirds

artículo científico publicado en 2007

Complete Genome Sequence of Frog virus 3, Isolated from a Strawberry Poison Frog (Oophaga pumilio) Imported from Nicaragua into the Netherlands

artículo científico publicado en 2017

Complete genome sequence of a common midwife toad virus-like ranavirus associated with mass mortalities in wild amphibians in the Netherlands

artículo científico publicado en 2014

Dense taxonomic EST sampling and its applications for molecular systematics of the Coleoptera (beetles).

artículo científico publicado en 2005

Development of reverse genetics systems and investigation of host response antagonism and reassortment potential for Cache Valley and Kairi viruses, two emerging orthobunyaviruses of the Americas

artículo científico publicado en 2018

DisCVR: Rapid viral diagnosis from high-throughput sequencing data

scientific article published on 01 July 2019

DisCVR: Rapid viral diagnosis from high-throughput sequencing data

artículo científico publicado en 2019

Ecomorphological adaptation of acorn weevils to their oviposition site

artículo científico publicado en 2004

Emergence of a highly pathogenic avian influenza virus from a low-pathogenic progenitor

artículo científico publicado en 2014

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs

artículo científico publicado en 2012

Evolutionary history of the UCP gene family: gene duplication and selection

artículo científico publicado en 2008

Evolutionary trajectories of two distinct avian influenza epidemics: Parallelisms and divergences

artículo científico publicado en 2015

Feline immunodeficiency virus (FIV) env recombinants are common in natural infections

artículo científico publicado en 2014

Full Genome Sequence and sfRNA Interferon Antagonist Activity of Zika Virus from Recife, Brazil

artículo científico publicado en 2016

Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses.

artículo científico publicado en 2017

GLUE: A flexible software system for virus sequence data

GLUE: a flexible software system for virus sequence data

2018 scholarly article published in BMC Bioinformatics

Gene expression in the gut of keratin-feeding clothes moths (Tineola) and keratin beetles (Trox) revealed by subtracted cDNA libraries

artículo científico publicado en 2006

Genetic analysis of members of the species Oropouche virus and identification of a novel M segment sequence

artículo científico publicado en 2015

Genetic imprint of vaccination on simian/human immunodeficiency virus type 1 transmitted viral genomes in rhesus macaques

artículo científico publicado en 2013

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

artículo científico

Host and viral determinants of Mx2 antiretroviral activity

artículo científico publicado en 2014

Human Cytomegalovirus Genomes Sequenced Directly From Clinical Material: Variation, Multiple-Strain Infection, Recombination, and Gene Loss

artículo científico publicado en 2019

ICTV Virus Taxonomy Profile: Parvoviridae

scientific article published on 23 January 2019

In silico prediction of HIV-1-host molecular interactions and their directionality

artículo científico publicado en 2022

Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases.

artículo científico publicado en 2019

Interpreting Viral Deep Sequencing Data with GLUE

scientific article published on 03 April 2019

Investigation of Amphibian Mortality Events in Wildlife Reveals an On-Going Ranavirus Epidemic in the North of the Netherlands

artículo científico publicado en 2016

Late Ebola virus relapse causing meningoencephalitis: a case report

artículo científico publicado en 2016

M segment-based minigenomes and virus-like particle assays as an approach to assess the potential of tick-borne Phlebovirus genome reassortment ⬇️

scholarly article by Veronica V. Rezelj et al published 19 December 2018 in Journal of Virology

Metaviromics Reveals Unknown Viral Diversity in the Biting Midge Culicoides impunctatus

artículo científico publicado en 2019

Multiple cophylogenetic analyses reveal frequent cospeciation between pelecaniform birds and Pectinopygus lice

artículo científico publicado en 2007

New highly diverse hepatitis C strains detected in sub-Saharan Africa have unknown susceptibility to direct-acting antiviral treatments

article

Next-generation sequencing sheds light on the natural history of hepatitis C infection in patients who fail treatment

artículo científico publicado en 2014

On the origin of Halipeurus heraldicus on Round Island petrels: cophylogenetic relationships between petrels and their chewing lice

artículo científico publicado en 2010

Origins and Evolutionary Dynamics of H3N2 Canine Influenza Virus.

artículo científico publicado en 2015

Phylodynamic analysis of porcine circovirus type 2 reveals global waves of emerging genotypes and the circulation of recombinant forms

artículo científico publicado en 2016

Phylodynamic analysis of porcine circovirus type 2: Methodological approach and datasets

artículo científico publicado en 2016

Quantifying and Cataloguing Unknown Sequences within Human Microbiomes

artículo científico publicado en 2022

Quasispecies Changes with Distinctive Point Mutations in the Hepatitis C Virus Internal Ribosome Entry Site (IRES) Derived from PBMCs and Plasma

artículo científico publicado en 2018

Ranavirus genotypes in the Netherlands and their potential association with virulence in water frogs (Pelophylax spp.).

artículo científico publicado en 2018

Rapid evolution of the env gene leader sequence in cats naturally infected with feline immunodeficiency virus

artículo científico publicado en 2014

Response to DAA therapy in the NHS England Early Access Programme for rare HCV subtypes from low and middle income countries

artículo científico publicado en 2017

Synonymous Dinucleotide Usage: A Codon-Aware Metric for Quantifying Dinucleotide Representation in Viruses

scientific article published on 20 April 2020

TRIM69 Inhibits Vesicular Stomatitis Indiana Virus

artículo científico publicado en 2019

The Envelope Gene of Transmitted HIV-1 Resists a Late Interferon Gamma-Induced Block.

scientific article published on 18 January 2017

The phylogeny of acorn weevils (genus Curculio) from mitochondrial and nuclear DNA sequences: the problem of incomplete data

artículo científico publicado en 2004

The spatial scale of genetic differentiation in a model organism: the wild yeast Saccharomyces paradoxus

artículo científico publicado en 2006

Tracking TCRβ Sequence Clonotype Expansions during Antiviral Therapy Using High-Throughput Sequencing of the Hypervariable Region

artículo científico publicado en 2016

Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks.

artículo científico publicado en 2012

TreeRipper web application: towards a fully automated optical tree recognition software ⬇️

artículo científico publicado el 20 de mayo de 2011

Uneven genetic robustness of HIV-1 integrase

artículo científico publicado en 2014

Unexpected Interfarm Transmission Dynamics during a Highly Pathogenic Avian Influenza Epidemic

scientific article published on 04 May 2016

Vaccine immune pressure influences viral population complexity of avian influenza virus during infection

artículo científico publicado en 2017

ViCTree: An automated framework for taxonomic classification from protein sequences

artículo científico publicado en 2018

Widespread Reassortment Shapes the Evolution and Epidemiology of Bluetongue Virus following European Invasion ⬇️

artículo científico publicado en 2015

Lista de obras de Joseph Hughes

Absence of adaptive evolution is the main barrier against influenza emergence in horses in Asia despite frequent virus interspecies transmission from wild birds

Avian UCP: the killjoy in the evolution of the mitochondrial uncoupling proteins

Bioinformatics tools for analysing viral genomic data

Characterization of a second open reading frame in genome segment 10 of bluetongue virus

Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

Comparative tests of ectoparasite species richness in seabirds

Complete Genome Sequence of Frog virus 3, Isolated from a Strawberry Poison Frog (Oophaga pumilio) Imported from Nicaragua into the Netherlands

Complete genome sequence of a common midwife toad virus-like ranavirus associated with mass mortalities in wild amphibians in the Netherlands

Dense taxonomic EST sampling and its applications for molecular systematics of the Coleoptera (beetles).

Development of reverse genetics systems and investigation of host response antagonism and reassortment potential for Cache Valley and Kairi viruses, two emerging orthobunyaviruses of the Americas

DisCVR: Rapid viral diagnosis from high-throughput sequencing data

DisCVR: Rapid viral diagnosis from high-throughput sequencing data

Ecomorphological adaptation of acorn weevils to their oviposition site

Emergence of a highly pathogenic avian influenza virus from a low-pathogenic progenitor

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs

Evolutionary history of the UCP gene family: gene duplication and selection

Evolutionary trajectories of two distinct avian influenza epidemics: Parallelisms and divergences

Feline immunodeficiency virus (FIV) env recombinants are common in natural infections

Full Genome Sequence and sfRNA Interferon Antagonist Activity of Zika Virus from Recife, Brazil

Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses.

GLUE: A flexible software system for virus sequence data

GLUE: a flexible software system for virus sequence data

Gene expression in the gut of keratin-feeding clothes moths (Tineola) and keratin beetles (Trox) revealed by subtracted cDNA libraries

Genetic analysis of members of the species Oropouche virus and identification of a novel M segment sequence

Genetic imprint of vaccination on simian/human immunodeficiency virus type 1 transmitted viral genomes in rhesus macaques

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

Host and viral determinants of Mx2 antiretroviral activity

Human Cytomegalovirus Genomes Sequenced Directly From Clinical Material: Variation, Multiple-Strain Infection, Recombination, and Gene Loss

ICTV Virus Taxonomy Profile: Parvoviridae

In silico prediction of HIV-1-host molecular interactions and their directionality

Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases.

Interpreting Viral Deep Sequencing Data with GLUE

Investigation of Amphibian Mortality Events in Wildlife Reveals an On-Going Ranavirus Epidemic in the North of the Netherlands

Late Ebola virus relapse causing meningoencephalitis: a case report

M segment-based minigenomes and virus-like particle assays as an approach to assess the potential of tick-borne Phlebovirus genome reassortment ⬇️

Metaviromics Reveals Unknown Viral Diversity in the Biting Midge Culicoides impunctatus

Multiple cophylogenetic analyses reveal frequent cospeciation between pelecaniform birds and Pectinopygus lice

New highly diverse hepatitis C strains detected in sub-Saharan Africa have unknown susceptibility to direct-acting antiviral treatments

Next-generation sequencing sheds light on the natural history of hepatitis C infection in patients who fail treatment

On the origin of Halipeurus heraldicus on Round Island petrels: cophylogenetic relationships between petrels and their chewing lice

Origins and Evolutionary Dynamics of H3N2 Canine Influenza Virus.

Phylodynamic analysis of porcine circovirus type 2 reveals global waves of emerging genotypes and the circulation of recombinant forms

Phylodynamic analysis of porcine circovirus type 2: Methodological approach and datasets

Quantifying and Cataloguing Unknown Sequences within Human Microbiomes

Quasispecies Changes with Distinctive Point Mutations in the Hepatitis C Virus Internal Ribosome Entry Site (IRES) Derived from PBMCs and Plasma

Ranavirus genotypes in the Netherlands and their potential association with virulence in water frogs (Pelophylax spp.).

Rapid evolution of the env gene leader sequence in cats naturally infected with feline immunodeficiency virus

Response to DAA therapy in the NHS England Early Access Programme for rare HCV subtypes from low and middle income countries

Synonymous Dinucleotide Usage: A Codon-Aware Metric for Quantifying Dinucleotide Representation in Viruses

TRIM69 Inhibits Vesicular Stomatitis Indiana Virus

The Envelope Gene of Transmitted HIV-1 Resists a Late Interferon Gamma-Induced Block.

The phylogeny of acorn weevils (genus Curculio) from mitochondrial and nuclear DNA sequences: the problem of incomplete data

The spatial scale of genetic differentiation in a model organism: the wild yeast Saccharomyces paradoxus

Tracking TCRβ Sequence Clonotype Expansions during Antiviral Therapy Using High-Throughput Sequencing of the Hypervariable Region

Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks.

TreeRipper web application: towards a fully automated optical tree recognition software ⬇️

Uneven genetic robustness of HIV-1 integrase

Unexpected Interfarm Transmission Dynamics during a Highly Pathogenic Avian Influenza Epidemic

Vaccine immune pressure influences viral population complexity of avian influenza virus during infection

ViCTree: An automated framework for taxonomic classification from protein sequences

Widespread Reassortment Shapes the Evolution and Epidemiology of Bluetongue Virus following European Invasion ⬇️