Lista de obras - Tetsuya Sakurai - Dominio Público Uruguay

A Resource of 5,814 Dissociation Transposon-tagged and Sequence-indexed Lines of Arabidopsis Transposed from Start Loci on Chromosome 5

artículo científico publicado en 2005

A collection of 11 800 single-copy Ds transposon insertion lines in Arabidopsis.

artículo científico publicado en 2004

A flexible representation of omic knowledge for thorough analysis of microarray data

artículo científico publicado en 2006

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

artículo científico publicado en 2020

A new resource of locally transposed Dissociation elements for screening gene-knockout lines in silico on the Arabidopsis genome

article

A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica

artículo científico publicado en 2012

A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis

artículo científico publicado en 2006

Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes

artículo científico publicado en 2017

Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley.

artículo científico publicado en 2016

AtMetExpress development: a phytochemical atlas of Arabidopsis development ⬇️

article

Bipolar localization of putative photoreceptor protein for phototaxis in thermophilic cyanobacterium Synechococcus elongatus

artículo científico publicado en 2002

Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray.

artículo científico

Chemical Assignment of Structural Isomers of Sulfur-Containing Metabolites in Garlic by Liquid Chromatography-Fourier Transform Ion Cyclotron Resonance-Mass Spectrometry

artículo científico publicado en 2016

Combination of liquid chromatography-Fourier transform ion cyclotron resonance-mass spectrometry with 13C-labeling for chemical assignment of sulfur-containing metabolites in onion bulbs

artículo científico publicado en 2013

Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray

artículo científico publicado en 2004

Content of intrinsic disorder influences the outcome of cell-free protein synthesis

artículo científico publicado en 2015

Correlations between predicted protein disorder and post-translational modifications in plants

artículo científico publicado en 2014

Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones

artículo científico publicado en 2013

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

artículo científico publicado en 2007

Design of an optimal promoter involved in the heat-induced transcriptional pathway in Arabidopsis, soybean, rice and maize

artículo científico publicado en 2016

Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops.

artículo científico publicado en 2015

Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon.

artículo científico publicado en 2017

Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume

artículo científico publicado en 2016

Efficient and Heritable Targeted Mutagenesis in Mosses Using the CRISPR/Cas9 System.

artículo científico publicado en 2016

Empirical analysis of transcriptional activity in the Arabidopsis genome

artículo científico publicado en 2003

Erratum: Genome sequence of the palaeopolyploid soybean

artículo científico publicado en 2010

Expression profiles of Arabidopsis phospholipase A IIA gene in response to biotic and abiotic stresses

artículo científico publicado en 2003

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones

artículo científico publicado en 2007

Functional annotation of a full-length Arabidopsis cDNA collection

artículo científico publicado en 2002

Genome sequence of the palaeopolyploid soybean

artículo científico publicado en 2010

Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences

artículo científico publicado en 2004

Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean

artículo científico publicado en 2010

Genome-wide analysis reveals phytohormone action during cassava storage root initiation.

artículo científico publicado en 2015

Genome-wide discovery and information resource development of DNA polymorphisms in cassava

artículo científico publicado en 2013

Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops

artículo científico

Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals

artículo científico publicado en 2013

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis

scientific article published on 29 June 2009

Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray

artículo científico publicado en 2003

Identification of Arabidopsis genic and non-genic promoters by paired-end sequencing of TSS tags

artículo científico publicado en 2017

Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice, and soybean

artículo científico publicado en 2011

Identification of plant promoter constituents by analysis of local distribution of short sequences

artículo científico publicado en 2007

In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae.

artículo científico publicado en 2015

In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean

artículo científico publicado en 2009

In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants

artículo científico

Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources

artículo científico publicado en 2013

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila

artículo científico publicado en 2008

LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors

artículo científico publicado en 2009

Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

artículo científico publicado en 2019

Metabolite/phytohormone-gene regulatory networks in soybean organs under dehydration conditions revealed by integration analysis

scientific article published on 18 February 2020

Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7000 full-length cDNA microarray

artículo científico publicado en 2003

Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays

scientific article published on 04 February 2006

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

artículo científico publicado en 2002

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

article

Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray

artículo científico publicado en 2002

Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray.

artículo científico publicado en 2004

PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation

artículo científico publicado en 2013

PRIMe: a Web site that assembles tools for metabolomics and transcriptomics.

artículo científico publicado en 2008

Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes.

artículo científico publicado en 2014

RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary

artículo científico publicado en 2013

RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome

artículo científico publicado en 2005

RARTF: database and tools for complete sets of Arabidopsis transcription factors

artículo científico publicado en 2005

RCH1, a locus in Arabidopsis that confers resistance to the hemibiotrophic fungal pathogen Colletotrichum higginsianum

artículo científico publicado en 2004

RIKEN Arabidopsis full-length (RAFL) cDNA and its applications for expression profiling under abiotic stress conditions

artículo científico publicado en 2003

RIKEN Arabidopsis full-length cDNA database

RIKEN Cassava Initiative: Establishment of a Cassava Functional Genomics Platform

artículo científico publicado en 2011

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

artículo científico publicado en 2012

RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function

artículo científico publicado en 2010

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response.

artículo científico publicado en 2007

Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.

artículo científico publicado en 2008

Systematic approaches to using the FOX hunting system to identify useful rice genes

article

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

artículo científico publicado en 2008

The Chloroplast Function Database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins

artículo científico publicado en 2012

The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis

artículo científico publicado en 2009

The cDNA microarray analysis using an Arabidopsis pad3 mutant reveals the expression profiles and classification of genes induced by Alternaria brassicicola attack

artículo científico publicado en 2003

Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources

artículo científico publicado en 2010

Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells

Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon

artículo científico publicado en 2015

Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production

artículo científico publicado en 2015

Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop

artículo científico publicado en 2012

TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics

artículo científico publicado en 2013

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics

artículo científico

TriMEDB: a database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae

artículo científico publicado en 2008

UniVIO: a multiple omics database with hormonome and transcriptome data from rice

artículo científico publicado en 2013

Whole transcriptome analysis using next-generation sequencing of sterile-cultured Eisenia andrei for immune system research

artículo científico publicado en 2015

Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants

artículo científico publicado en 2008

[Arabidopsis functional genomics using full-length cDNAs].

artículo científico publicado en 2003

[Bioinformatics]

artículo científico publicado en 2002

[Review] Towards Cassava Molecular Breeding in Collaboration with ASEAN Countries

artículo científico publicado en 2017

ppdb: plant promoter database version 3.0.

artículo científico publicado en 2013

sORF finder: a program package to identify small open reading frames with high coding potential

artículo científico publicado en 2009

Lista de obras de Tetsuya Sakurai

A Resource of 5,814 Dissociation Transposon-tagged and Sequence-indexed Lines of Arabidopsis Transposed from Start Loci on Chromosome 5

A collection of 11 800 single-copy Ds transposon insertion lines in Arabidopsis.

A flexible representation of omic knowledge for thorough analysis of microarray data

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

A new resource of locally transposed Dissociation elements for screening gene-knockout lines in silico on the Arabidopsis genome

A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica

A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis

Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes

Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley.

AtMetExpress development: a phytochemical atlas of Arabidopsis development ⬇️

Bipolar localization of putative photoreceptor protein for phototaxis in thermophilic cyanobacterium Synechococcus elongatus

Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray.

Chemical Assignment of Structural Isomers of Sulfur-Containing Metabolites in Garlic by Liquid Chromatography-Fourier Transform Ion Cyclotron Resonance-Mass Spectrometry

Combination of liquid chromatography-Fourier transform ion cyclotron resonance-mass spectrometry with 13C-labeling for chemical assignment of sulfur-containing metabolites in onion bulbs

Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray

Content of intrinsic disorder influences the outcome of cell-free protein synthesis

Correlations between predicted protein disorder and post-translational modifications in plants

Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

Design of an optimal promoter involved in the heat-induced transcriptional pathway in Arabidopsis, soybean, rice and maize

Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops.

Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon.

Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume

Efficient and Heritable Targeted Mutagenesis in Mosses Using the CRISPR/Cas9 System.

Empirical analysis of transcriptional activity in the Arabidopsis genome

Erratum: Genome sequence of the palaeopolyploid soybean

Expression profiles of Arabidopsis phospholipase A IIA gene in response to biotic and abiotic stresses

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones

Functional annotation of a full-length Arabidopsis cDNA collection

Genome sequence of the palaeopolyploid soybean

Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences

Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean

Genome-wide analysis reveals phytohormone action during cassava storage root initiation.

Genome-wide discovery and information resource development of DNA polymorphisms in cassava

Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops

Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis

Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray

Identification of Arabidopsis genic and non-genic promoters by paired-end sequencing of TSS tags

Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice, and soybean

Identification of plant promoter constituents by analysis of local distribution of short sequences

In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae.

In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean

In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants

Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila

LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors

Localization-specific distributions of protein pI in human proteome are governed by local pH and membrane charge

Metabolite/phytohormone-gene regulatory networks in soybean organs under dehydration conditions revealed by integration analysis

Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7000 full-length cDNA microarray

Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray

Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray.

PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation

PRIMe: a Web site that assembles tools for metabolomics and transcriptomics.

Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes.

RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary

RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome

RARTF: database and tools for complete sets of Arabidopsis transcription factors

RCH1, a locus in Arabidopsis that confers resistance to the hemibiotrophic fungal pathogen Colletotrichum higginsianum

RIKEN Arabidopsis full-length (RAFL) cDNA and its applications for expression profiling under abiotic stress conditions

RIKEN Arabidopsis full-length cDNA database

RIKEN Cassava Initiative: Establishment of a Cassava Functional Genomics Platform

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response.

Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library.

Systematic approaches to using the FOX hunting system to identify useful rice genes

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

The Chloroplast Function Database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins

The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis

The cDNA microarray analysis using an Arabidopsis pad3 mutant reveals the expression profiles and classification of genes induced by Alternaria brassicicola attack

Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources

Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells

Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon

Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production

Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop