Lista de obras - Petr Novak - Dominio Público Uruguay

A reference genome for pea provides insight into legume genome evolution

artículo científico publicado en 2019

A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons ⬇️

artículo científico publicado el 29 de abril de 2012

Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies

scientific article published on 01 June 2019

Analysis of global and absorption, distribution, metabolism, and elimination gene expression in the progressive stages of human nonalcoholic fatty liver disease.

artículo científico publicado en 2011

Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

artículo científico publicado en 2015

Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres

artículo científico publicado en 2014

Branched chain amino acid metabolism profiles in progressive human nonalcoholic fatty liver disease.

artículo científico publicado en 2014

Cell-type specific DNA methylation patterns define human breast cellular identity

artículo científico publicado en 2012

Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea

artículo científico publicado en 2015

Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species

artículo científico publicado en 2015

Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species

artículo científico publicado en 2016

Characterization of a novel radiation-induced sarcoma cell line

artículo científico publicado en 2015

Characterization of hepatocellular carcinoma related genes and metabolites in human nonalcoholic fatty liver disease.

artículo científico publicado en 2013

Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences.

artículo científico publicado en 2015

Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries

artículo científico publicado en 2020

Cloning and molecular analysis of the regulatory factor HlMyb1 in hop (Humulus lupulus L.) and the potential of hop to produce bioactive prenylated flavonoids

artículo científico publicado en 2005

Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa.

artículo científico publicado en 2013

Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae).

artículo científico publicado en 2018

Decreased hepatotoxic bile acid composition and altered synthesis in progressive human nonalcoholic fatty liver disease.

artículo científico publicado en 2013

Differential amplification of satellite PaB6 in chromosomally hypervariable Prospero autumnale complex (Hyacinthaceae).

artículo científico publicado en 2014

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

artículo científico publicado en 2013

Epigenetic inactivation of the HOXA gene cluster in breast cancer

artículo científico publicado en 2006

Epigenetic remodeling during arsenical-induced malignant transformation.

artículo científico publicado en 2008

Expression profiling of circulating tumor cells in metastatic breast cancer

artículo científico publicado en 2014

Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda

scientific article published on 28 June 2019

Genome-wide analysis of repeat diversity across the family Musaceae

artículo científico publicado en 2014

Genomic repeat abundances contain phylogenetic signal.

artículo científico publicado en 2014

Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2

artículo científico publicado en 2020

Global gene expression changes in human urothelial cells exposed to low-level monomethylarsonous acid ⬇️

artículo científico publicado el 17 de noviembre de 2011

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

artículo científico publicado en 2010

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

artículo científico publicado en 2010

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.

artículo científico publicado en 2015

Immortalization of normal human mammary epithelial cells in two steps by direct targeting of senescence barriers does not require gross genomic alterations.

artículo científico publicado en 2014

Impaired N-linked glycosylation of uptake and efflux transporters in human non-alcoholic fatty liver disease

artículo científico publicado en 2017

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

artículo científico publicado en 2015

Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.

artículo científico publicado en 2012

Karyotypes and Distribution of Tandem Repeat Sequences in Brassica nigra Determined by Fluorescence in situ Hybridization.

artículo científico publicado en 2017

Metabolomic profiling distinction of human nonalcoholic fatty liver disease progression from a common rat model.

artículo científico publicado en 2017

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

artículo científico publicado en 2011

Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia

artículo científico publicado en 2011

Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

artículo científico publicado en 2012

Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes

artículo científico publicado en 2019

Organization and evolution of subtelomeric satellite repeats in the potato genome.

artículo científico publicado en 2011

Repeat-sequence turnover shifts fundamentally in species with large genomes

artículo científico publicado en 2020

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

artículo científico publicado en 2013

Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

artículo científico publicado en 2012

Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing.

artículo científico publicado en 2018

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

artículo científico publicado en 2012

Stepwise DNA methylation changes are linked to escape from defined proliferation barriers and mammary epithelial cell immortalization.

artículo científico publicado en 2009

Stretching the rules: monocentric chromosomes with multiple centromere domains

artículo científico publicado en 2012

Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

artículo científico publicado en 2012

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

article

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.

artículo científico publicado en 2017

The Dark Matter of Large Cereal Genomes: Long Tandem Repeats

artículo científico publicado en 2019

The adaptive endoplasmic reticulum stress response to lipotoxicity in progressive human nonalcoholic fatty liver disease

scientific article published on 04 October 2013

The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridity

artículo científico publicado en 2022

The giant diploid faba genome unlocks variation in a global protein crop

artículo científico publicado en 2023

The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.

artículo científico publicado en 2012

Transcription factor binding site enrichment analysis predicts drivers of altered gene expression in nonalcoholic steatohepatitis.

artículo científico publicado en 2016

p53 induces distinct epigenetic states at its direct target promoters

artículo científico publicado en 2008

Lista de obras de Petr Novak

A reference genome for pea provides insight into legume genome evolution

A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons ⬇️

Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies

Analysis of global and absorption, distribution, metabolism, and elimination gene expression in the progressive stages of human nonalcoholic fatty liver disease.

Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres

Branched chain amino acid metabolism profiles in progressive human nonalcoholic fatty liver disease.

Cell-type specific DNA methylation patterns define human breast cellular identity

Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea

Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species

Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species

Characterization of a novel radiation-induced sarcoma cell line

Characterization of hepatocellular carcinoma related genes and metabolites in human nonalcoholic fatty liver disease.

Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences.

Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries

Cloning and molecular analysis of the regulatory factor HlMyb1 in hop (Humulus lupulus L.) and the potential of hop to produce bioactive prenylated flavonoids

Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa.

Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae).

Decreased hepatotoxic bile acid composition and altered synthesis in progressive human nonalcoholic fatty liver disease.

Differential amplification of satellite PaB6 in chromosomally hypervariable Prospero autumnale complex (Hyacinthaceae).

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

Epigenetic inactivation of the HOXA gene cluster in breast cancer

Epigenetic remodeling during arsenical-induced malignant transformation.

Expression profiling of circulating tumor cells in metastatic breast cancer

Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda

Genome-wide analysis of repeat diversity across the family Musaceae

Genomic repeat abundances contain phylogenetic signal.

Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2

Global gene expression changes in human urothelial cells exposed to low-level monomethylarsonous acid ⬇️

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.

Immortalization of normal human mammary epithelial cells in two steps by direct targeting of senescence barriers does not require gross genomic alterations.

Impaired N-linked glycosylation of uptake and efflux transporters in human non-alcoholic fatty liver disease

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.

Karyotypes and Distribution of Tandem Repeat Sequences in Brassica nigra Determined by Fluorescence in situ Hybridization.

Metabolomic profiling distinction of human nonalcoholic fatty liver disease progression from a common rat model.

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia

Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes

Organization and evolution of subtelomeric satellite repeats in the potato genome.

Repeat-sequence turnover shifts fundamentally in species with large genomes

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing.

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

Stepwise DNA methylation changes are linked to escape from defined proliferation barriers and mammary epithelial cell immortalization.

Stretching the rules: monocentric chromosomes with multiple centromere domains

Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.

The Dark Matter of Large Cereal Genomes: Long Tandem Repeats

The adaptive endoplasmic reticulum stress response to lipotoxicity in progressive human nonalcoholic fatty liver disease

The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridity

The giant diploid faba genome unlocks variation in a global protein crop

The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.

Transcription factor binding site enrichment analysis predicts drivers of altered gene expression in nonalcoholic steatohepatitis.

p53 induces distinct epigenetic states at its direct target promoters