Lista de obras - Daisuke Kohda - Dominio Público Uruguay

"Multiple partial recognitions in dynamic equilibrium" in the binding sites of proteins form the molecular basis of promiscuous recognition of structurally diverse ligands

artículo científico publicado en 2017

1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin

artículo científico publicado en 1990

1H, 13C and 15N backbone resonance assignments of the N-terminal domain of Drosophila GCM protein

artículo científico publicado en 2003

A critical role of the 3' terminus of nascent DNA chains in recognition of stalled replication forks.

artículo científico publicado en 2003

A region C-terminal to the proline-rich core of p47phox regulates activation of the phagocyte NADPH oxidase by interacting with the C-terminal SH3 domain of p67phox

artículo científico publicado en 2005

A simplified recipe for assigning amide NMR signals using combinatorial 14N amino acid inverse-labeling.

artículo científico publicado en 2011

A site-directed mutagenesis study on the role of isoleucine-23 of human epidermal growth factor in the receptor binding

scientific article published on 01 April 1992

Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2.

artículo científico publicado en 2014

Asn-linked oligosaccharide chain of a crenarchaeon, Pyrobaculum calidifontis, is reminiscent of the eukaryotic high-mannose-type glycan.

artículo científico publicado en 2017

Biophysical characterization of O-glycosylated CD99 recognition by paired Ig-like type 2 receptors.

artículo científico publicado en 2008

Biophysics at Kyushu University

artículo científico publicado en 2020

Blockade of inflammatory responses by a small-molecule inhibitor of the Rac activator DOCK2.

artículo científico publicado en 2012

Characterization of pH titration shifts for all the nonlabile proton resonances a protein by two-dimensional NMR: the case of mouse epidermal growth factor

scientific article published on 01 May 1991

Characterization of the N-oligosaccharides attached to the atypical Asn-X-Cys sequence of recombinant human epidermal growth factor receptor

artículo científico publicado en 2000

Comparative Analysis of Archaeal Lipid-linked Oligosaccharides That Serve as Oligosaccharide Donors for Asn Glycosylation.

artículo científico publicado en 2016

Complete sequence-specific 1H nuclear magnetic resonance assignments for mouse epidermal growth factor

artículo científico publicado en 1988

Computational Investigation of the Conformational Dynamics in Tom20-Mitochondrial Presequence Tethered Complexes

scientific article published on 16 November 2018

Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site.

artículo científico publicado en 2005

Crystal structure of measles virus hemagglutinin provides insight into effective vaccines

artículo científico publicado en 2007

Crystal structure of the C-terminal globular domain of oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75 Å resolution

artículo científico publicado el 14 de mayo de 2012

Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases

artículo científico publicado en 2013

Crystal structure of the human monocyte-activating receptor, "Group 2" leukocyte Ig-like receptor A5 (LILRA5/LIR9/ILT11).

artículo científico publicado en 2006

Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation

artículo científico publicado en 2013

Crystallization and preliminary X-ray analysis of mitochondrial presequence receptor Tom20 in complexes with a presequence from aldehyde dehydrogenase

artículo científico publicado en 2005

Crystallization and preliminary X-ray analysis of the mRNA-binding domain of elongation factor SelB in complex with RNA.

artículo científico publicado en 2005

Crystallographic and NMR Evidence for Flexibility in Oligosaccharyltransferases and Its Catalytic Significance ⬇️

artículo científico publicado el 21 de noviembre de 2012

Crystallographic snapshots of Tom20-mitochondrial presequence interactions with disulfide-stabilized peptides

artículo científico publicado en 2011

DNA binding of PriA protein requires cooperation of the N-terminal D-loop/arrested-fork binding and C-terminal helicase domains.

artículo científico publicado en 2002

Detection of weak ligand interactions of leukocyte Ig-like receptor B1 by fluorescence correlation spectroscopy.

artículo científico publicado en 2006

Direct visualization of DNA baton pass between replication factors bound to PCNA

scientific article published in Scientific Reports

Disordered interdomain region of Gins is important for functional tetramer formation to stimulate MCM helicase in Thermoplasma acidophilum.

artículo científico publicado en 2014

Disulfide bond structure of human epidermal growth factor receptor.

artículo científico publicado en 1998

Dual role of the receptor Tom20 in specificity and efficiency of protein import into mitochondria.

artículo científico publicado en 2010

Efficient leukocyte Ig-like receptor signaling and crystal structure of disulfide-linked HLA-G dimer.

artículo científico publicado en 2006

Energetics of the Presequence-Binding Poses in Mitochondrial Protein Import Through Tom20 ⬇️

artículo científico publicado el 5 de marzo de 2013

Escherichia coli PriA protein, two modes of DNA binding and activation of ATP hydrolysis.

artículo científico publicado en 2007

Extensive polymorphisms of LILRB1 (ILT2, LIR1) and their association with HLA-DRB1 shared epitope negative rheumatoid arthritis

scientific article published on 13 July 2005

Homogeneous sugar modification improves crystallization of measles virus hemagglutinin.

artículo científico publicado en 2008

Identification of the receptor-recognition surface of bombyxin-II, an insulin-like peptide of the silkmoth Bombyx mori: critical importance of the B-chain central part.

artículo científico publicado en 1995

Ligand-binding enhances the affinity of dimerization of the extracellular domain of the epidermal growth factor receptor.

artículo científico publicado en 1997

Mosaic Cooperativity in Slow Polypeptide Topological Isomerization Revealed by Residue-Specific NMR Thermodynamic Analysis

scientific article published on 25 February 2020

N-Glycosylation with synthetic undecaprenyl pyrophosphate-linked oligosaccharide to oligopeptides by PglB oligosaccharyltransferase from Campylobacter jejuni

artículo científico publicado en 2015

NMR analyses of the conformations of L-isoleucine and L-valine bound to Escherichia coli isoleucyl-tRNA synthetase

scientific article published on 01 October 1987

NMR identification of the Tom20 binding segment in mitochondrial presequences

artículo científico publicado en 2001

New oligosaccharyltransferase assay method.

artículo científico

Nuclear-magnetic-resonance studies of human epidermal growth factor

artículo científico publicado en 1990

Peptide Library Approach with a Disulfide Tether to Refine the Tom20 Recognition Motif in Mitochondrial Presequences ⬇️

artículo científico publicado el 25 de abril de 2003

Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7

scientific article published on 18 October 2019

Polypeptide chain fold of human transforming growth factor alpha analogous to those of mouse and human epidermal growth factors as studied by two-dimensional 1H NMR

artículo científico publicado en 1989

Purification, crystallization and preliminary X-ray diffraction studies of the soluble domain of the oligosaccharyltransferase STT3 subunit from the thermophilic archaeon Pyrococcus furiosus.

artículo científico publicado en 2007

Quantitative assessment of the preferences for the amino acid residues flanking archaeal N-linked glycosylation sites.

artículo científico publicado en 2010

Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.

artículo científico publicado en 2015

Ring A of nukacin ISK-1: a lipid II-binding motif for type-A(II) lantibiotic

scientific article published on 17 February 2012

Secondary structural features of modules M2 and M3 of barnase in solution by NMR experiment and distance geometry calculation

artículo científico publicado en 1993

Selective control of oligosaccharide transfer efficiency for the N-glycosylation sequon by a point mutation in oligosaccharyltransferase.

artículo científico publicado en 2011

Soft metal ions, Cd(II) and Hg(II), induce triple-stranded alpha-helical assembly and folding of a de novo designed peptide in their trigonal geometries.

artículo científico publicado en 2000

Solution structure and ligand-binding site of the carboxy-terminal SH3 domain of GRB2

artículo científico publicado en 1994

Solution structure of the PX domain, a target of the SH3 domain

artículo científico publicado en 2001

Solution structure of the SH3 domain of phospholipase C-gamma

artículo científico publicado en 1993

Stalled replication forks: making ends meet for recognition and stabilization.

scientific article published on August 2010

Structural Basis of Protein Asn-Glycosylation by Oligosaccharyltransferases

artículo científico publicado en 2018

Structural basis for Marburg virus neutralization by a cross-reactive human antibody

artículo científico publicado en 2015

Structural basis for dynamic interdomain movement and RNA recognition of the selenocysteine-specific elongation factor SelB

artículo científico publicado en 2007

Structural basis for mRNA recognition by elongation factor SelB

artículo científico publicado en 2005

Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms

artículo científico publicado en 2012

Structural basis for recognition of the nonclassical MHC molecule HLA-G by the leukocyte Ig-like receptor B2 (LILRB2/LIR2/ILT4/CD85d)

artículo científico publicado en 2006

Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT

artículo científico publicado en 2014

Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 μ homology domain

scientific journal article

Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Archaeoglobus fulgidus

artículo científico publicado en 2015

Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Pyrococcus furiosus

artículo científico publicado en 2014

Structure and activity of JAC1 J-domain implicate the involvement of the cochaperone activity with HSC70 in chloroplast photorelocation movement.

artículo científico publicado en 2010

Structure of epidermal growth factor bound to perdeuterated dodecylphosphocholine micelles determined by two-dimensional NMR and simulated annealing calculations

artículo científico publicado en 1992

Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations

artículo científico publicado el 22 de diciembre de 1992

Structure-guided identification of a new catalytic motif of oligosaccharyltransferase

artículo científico publicado en 2008

Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.

artículo científico publicado en 2018

TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P₂

artículo científico publicado en 2014

Tertiary structure of conotoxin GIIIA in aqueous solution

scientific article published on 01 July 1991

Tertiary structure of mouse epidermal growth factor determined by two-dimensional 1H NMR

artículo científico publicado en 1988

Tethering an N-Glycosylation Sequon-Containing Peptide Creates a Catalytically Competent Oligosaccharyltransferase Complex.

artículo científico publicado en 2016

The BALB/c-specific polymorphic SIRPA enhances its affinity for human CD47, inhibiting phagocytosis against human cells to promote xenogeneic engraftment

artículo científico publicado en 2013

The RecJ2 protein in the thermophilic archaeon Thermoplasma acidophilum is a 3'-5' exonuclease that associates with a DNA replication complex.

artículo científico publicado en 2017

The archaeal DNA primase: biochemical characterization of the p41-p46 complex from Pyrococcus furiosus.

artículo científico

The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states

artículo científico publicado en 2018

The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon

artículo científico publicado en 2021

Three-dimensional nuclear magnetic resonance structures of mouse epidermal growth factor in acidic and physiological pH solutions

artículo científico publicado en 1992

Trajectory analysis of NMR structure calculations

artículo científico publicado en 1995

Trisaccharide containing α2,3-linked sialic acid is a receptor for mumps virus

artículo científico publicado en 2016

Trypanosoma brucei 14-3-3I and II proteins predominantly form a heterodimer structure that acts as a potent cell cycle regulator in vivo.

artículo científico publicado en 2013

Uncoupling the hydrolysis of lipid-linked oligosaccharide from the oligosaccharyl transfer reaction by point mutations in yeast oligosaccharyltransferase

scientific article published on 16 September 2020

VHL-box and SOCS-box domains determine binding specificity for Cul2-Rbx1 and Cul5-Rbx2 modules of ubiquitin ligases

artículo científico publicado en 2004

X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation

artículo científico publicado en 2017

Lista de obras de Daisuke Kohda

"Multiple partial recognitions in dynamic equilibrium" in the binding sites of proteins form the molecular basis of promiscuous recognition of structurally diverse ligands

1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin

1H, 13C and 15N backbone resonance assignments of the N-terminal domain of Drosophila GCM protein

A critical role of the 3' terminus of nascent DNA chains in recognition of stalled replication forks.

A region C-terminal to the proline-rich core of p47phox regulates activation of the phagocyte NADPH oxidase by interacting with the C-terminal SH3 domain of p67phox

A simplified recipe for assigning amide NMR signals using combinatorial 14N amino acid inverse-labeling.

A site-directed mutagenesis study on the role of isoleucine-23 of human epidermal growth factor in the receptor binding

Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2.

Asn-linked oligosaccharide chain of a crenarchaeon, Pyrobaculum calidifontis, is reminiscent of the eukaryotic high-mannose-type glycan.

Biophysical characterization of O-glycosylated CD99 recognition by paired Ig-like type 2 receptors.

Biophysics at Kyushu University

Blockade of inflammatory responses by a small-molecule inhibitor of the Rac activator DOCK2.

Characterization of pH titration shifts for all the nonlabile proton resonances a protein by two-dimensional NMR: the case of mouse epidermal growth factor

Characterization of the N-oligosaccharides attached to the atypical Asn-X-Cys sequence of recombinant human epidermal growth factor receptor

Comparative Analysis of Archaeal Lipid-linked Oligosaccharides That Serve as Oligosaccharide Donors for Asn Glycosylation.

Complete sequence-specific 1H nuclear magnetic resonance assignments for mouse epidermal growth factor

Computational Investigation of the Conformational Dynamics in Tom20-Mitochondrial Presequence Tethered Complexes

Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site.

Crystal structure of measles virus hemagglutinin provides insight into effective vaccines

Crystal structure of the C-terminal globular domain of oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75 Å resolution

Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases

Crystal structure of the human monocyte-activating receptor, "Group 2" leukocyte Ig-like receptor A5 (LILRA5/LIR9/ILT11).

Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation

Crystallization and preliminary X-ray analysis of mitochondrial presequence receptor Tom20 in complexes with a presequence from aldehyde dehydrogenase

Crystallization and preliminary X-ray analysis of the mRNA-binding domain of elongation factor SelB in complex with RNA.

Crystallographic and NMR Evidence for Flexibility in Oligosaccharyltransferases and Its Catalytic Significance ⬇️

Crystallographic snapshots of Tom20-mitochondrial presequence interactions with disulfide-stabilized peptides

DNA binding of PriA protein requires cooperation of the N-terminal D-loop/arrested-fork binding and C-terminal helicase domains.

Detection of weak ligand interactions of leukocyte Ig-like receptor B1 by fluorescence correlation spectroscopy.

Direct visualization of DNA baton pass between replication factors bound to PCNA

Disordered interdomain region of Gins is important for functional tetramer formation to stimulate MCM helicase in Thermoplasma acidophilum.

Disulfide bond structure of human epidermal growth factor receptor.

Dual role of the receptor Tom20 in specificity and efficiency of protein import into mitochondria.

Efficient leukocyte Ig-like receptor signaling and crystal structure of disulfide-linked HLA-G dimer.

Energetics of the Presequence-Binding Poses in Mitochondrial Protein Import Through Tom20 ⬇️

Escherichia coli PriA protein, two modes of DNA binding and activation of ATP hydrolysis.

Extensive polymorphisms of LILRB1 (ILT2, LIR1) and their association with HLA-DRB1 shared epitope negative rheumatoid arthritis

Homogeneous sugar modification improves crystallization of measles virus hemagglutinin.

Identification of the receptor-recognition surface of bombyxin-II, an insulin-like peptide of the silkmoth Bombyx mori: critical importance of the B-chain central part.

Ligand-binding enhances the affinity of dimerization of the extracellular domain of the epidermal growth factor receptor.

Mosaic Cooperativity in Slow Polypeptide Topological Isomerization Revealed by Residue-Specific NMR Thermodynamic Analysis

N-Glycosylation with synthetic undecaprenyl pyrophosphate-linked oligosaccharide to oligopeptides by PglB oligosaccharyltransferase from Campylobacter jejuni

NMR analyses of the conformations of L-isoleucine and L-valine bound to Escherichia coli isoleucyl-tRNA synthetase

NMR identification of the Tom20 binding segment in mitochondrial presequences

New oligosaccharyltransferase assay method.

Nuclear-magnetic-resonance studies of human epidermal growth factor

Peptide Library Approach with a Disulfide Tether to Refine the Tom20 Recognition Motif in Mitochondrial Presequences ⬇️

Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7

Polypeptide chain fold of human transforming growth factor alpha analogous to those of mouse and human epidermal growth factors as studied by two-dimensional 1H NMR

Purification, crystallization and preliminary X-ray diffraction studies of the soluble domain of the oligosaccharyltransferase STT3 subunit from the thermophilic archaeon Pyrococcus furiosus.

Quantitative assessment of the preferences for the amino acid residues flanking archaeal N-linked glycosylation sites.

Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.

Ring A of nukacin ISK-1: a lipid II-binding motif for type-A(II) lantibiotic

Secondary structural features of modules M2 and M3 of barnase in solution by NMR experiment and distance geometry calculation

Selective control of oligosaccharide transfer efficiency for the N-glycosylation sequon by a point mutation in oligosaccharyltransferase.

Soft metal ions, Cd(II) and Hg(II), induce triple-stranded alpha-helical assembly and folding of a de novo designed peptide in their trigonal geometries.

Solution structure and ligand-binding site of the carboxy-terminal SH3 domain of GRB2

Solution structure of the PX domain, a target of the SH3 domain

Solution structure of the SH3 domain of phospholipase C-gamma

Stalled replication forks: making ends meet for recognition and stabilization.

Structural Basis of Protein Asn-Glycosylation by Oligosaccharyltransferases

Structural basis for Marburg virus neutralization by a cross-reactive human antibody

Structural basis for dynamic interdomain movement and RNA recognition of the selenocysteine-specific elongation factor SelB

Structural basis for mRNA recognition by elongation factor SelB

Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms

Structural basis for recognition of the nonclassical MHC molecule HLA-G by the leukocyte Ig-like receptor B2 (LILRB2/LIR2/ILT4/CD85d)

Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT

Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 μ homology domain

Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Archaeoglobus fulgidus

Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Pyrococcus furiosus

Structure and activity of JAC1 J-domain implicate the involvement of the cochaperone activity with HSC70 in chloroplast photorelocation movement.

Structure of epidermal growth factor bound to perdeuterated dodecylphosphocholine micelles determined by two-dimensional NMR and simulated annealing calculations

Structure-activity relationships of mu-conotoxin GIIIA: structure determination of active and inactive sodium channel blocker peptides by NMR and simulated annealing calculations

Structure-guided identification of a new catalytic motif of oligosaccharyltransferase

Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.

TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P₂

Tertiary structure of conotoxin GIIIA in aqueous solution

Tertiary structure of mouse epidermal growth factor determined by two-dimensional 1H NMR

Tethering an N-Glycosylation Sequon-Containing Peptide Creates a Catalytically Competent Oligosaccharyltransferase Complex.