Lista de obras - Joshua Ho - Dominio Público Uruguay

A Screening Approach to Identify Clinically Actionable Variants Causing Congenital Heart Disease in Exome Data

artículo científico publicado en 2018

A Wnt-Bmp Feedback Circuit Controls Intertissue Signaling Dynamics in Tooth Organogenesis ⬇️

artículo científico publicado el 10 de enero de 2012

A genetic ensemble approach for gene-gene interaction identification

artículo científico publicado en 2010

A model selection approach to discover age-dependent gene expression patterns using quantile regression models.

artículo científico publicado en 2009

A voting approach to identify a small number of highly predictive genes using multiple classifiers

artículo científico publicado en 2009

Aberrant Expression of Circulating MicroRNA Leads to the Dysregulation of Alpha-Synuclein and Other Pathogenic Genes in Parkinson's Disease

artículo científico publicado en 2021

An Embryonic and Induced Pluripotent Stem Cell Model for Ovarian Granulosa Cell Development and Steroidogenesis.

artículo científico publicado en 2017

An antibody-based leukocyte-capture microarray for the diagnosis of systemic lupus erythematosus.

artículo científico publicado en 2013

An innovative approach for testing bioinformatics programs using metamorphic testing

artículo científico publicado en 2009

Application of Metamorphic Testing to Supervised Classifiers

artículo científico publicado en 2010

Application of a systems approach to study developmental gene regulation

artículo científico publicado en 2012

Big data: the elements of good questions, open data, and powerful software

scientific article published on 25 January 2019

Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site.

artículo científico publicado en 2015

Biologically active constituents of the secretome of human W8B2+ cardiac stem cells.

artículo científico publicado en 2018

C3: An R package for cross-species compendium-based cell-type identification

scientific article published on 09 October 2018

CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data

artículo científico publicado en 2017

CardiacProfileR: an R package for extraction and visualisation of heart rate profiles from wearable fitness trackers

artículo científico publicado en 2019

ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.

artículo científico publicado en 2011

Challenges and emerging systems biology approaches to discover how the human gut microbiome impact host physiology

artículo científico publicado en 2020

Cisplatin prevents breast cancer metastasis through blocking early EMT and retards cancer growth together with paclitaxel

artículo científico publicado en 2021

Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco

artículo científico publicado en 2019

Crim1 regulates integrin signaling in murine lens development.

artículo científico publicado en 2015

Customising an antibody leukocyte capture microarray for systemic lupus erythematosus: beyond biomarker discovery.

artículo científico publicado en 2009

Dam mutants provide improved sensitivity and spatial resolution for profiling transcription factor binding.

artículo científico publicado en 2019

Decoding the complex genetic causes of heart diseases using systems biology

artículo científico publicado en 2014

Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest.

artículo científico publicado en 2018

Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus

artículo científico publicado en 2019

Effect of machine learning re-sampling techniques for imbalanced datasets in 18F-FDG PET-based radiomics model on prognostication performance in cohorts of head and neck cancer patients

scientific article published on 06 April 2020

Enhanced cardiac repair by telomerase reverse transcriptase over-expression in human cardiac mesenchymal stromal cells

scientific article published on 22 July 2019

Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud

artículo científico publicado en 2016

Gene-gene interaction filtering with ensemble of filters

artículo científico publicado en 2011

Hactive: a smartphone application for heart rate profiling

artículo científico publicado en 2020

Host and microbiome multi-omics integration: applications and methodologies

artículo científico publicado en 2019

How to test bioinformatics software?

artículo científico publicado en 2015

Identification of active signaling pathways by integrating gene expression and protein interaction data

article

Identification of clinically actionable variants from genome sequencing of families with congenital heart disease

scientific article published on 08 October 2018

Identification of satellite cells from anole lizard skeletal muscle and demonstration of expanded musculoskeletal potential

artículo científico publicado en 2017

Impact of sequencing depth and read length on single cell RNA sequencing data of T cells.

artículo científico publicado en 2017

Impact of sequencing depth in ChIP-seq experiments.

artículo científico publicado en 2014

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

artículo científico publicado en 2017

Intercalated discs: multiple proteins perform multiple functions in non-failing and failing human hearts.

artículo científico publicado en 2009

Light-focusing human micro-lenses generated from pluripotent stem cells model lens development and drug-induced cataract in vitro

artículo científico publicado en 2017

Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci.

artículo científico publicado en 2011

MQuad enables clonal substructure discovery using single cell mitochondrial variants

artículo científico publicado en 2022

Machine learning-coupled combinatorial mutagenesis enables resource-efficient engineering of CRISPR-Cas9 genome editor activities

artículo científico publicado en 2022

Male-lineage transmission of an acquired metabolic phenotype induced by grand-paternal obesity

artículo científico publicado en 2016

Maternal obesity heritably perturbs offspring metabolism for three generations without serial programming.

artículo científico publicado en 2017

Modelling, inference and big data in biophysics.

artículo científico publicado en 2017

NAD Deficiency, Congenital Malformations, and Niacin Supplementation.

artículo científico publicado en 2017

Network modelling of gene regulation

artículo científico publicado en 2010

PBrowse: a web-based platform for real-time collaborative exploration of genomic data.

artículo científico publicado en 2017

Scalability and Validation of Big Data Bioinformatics Software

artículo científico

Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.

artículo científico publicado en 2012

Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury

article

Targeted next-generation sequencing identifies pathogenic variants in familial congenital heart disease

artículo científico publicado en 2014

Testing and Validating Machine Learning Classifiers by Metamorphic Testing

artículo científico publicado en 2011

The Short Isoform of the CEACAM1 Receptor in Intestinal T Cells Regulates Mucosal Immunity and Homeostasis via Tfh Cell Induction ⬇️

artículo científico publicado el 16 de noviembre de 2012

The method to quantify cell elasticity based on the precise measurement of pressure inducing cell deformation in microfluidic channels

artículo científico publicado en 2021

Ultrafast clustering of single-cell flow cytometry data using FlowGrid

artículo científico publicado en 2019

Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie

artículo científico publicado en 2014

Verification of phylogenetic inference programs using metamorphic testing.

artículo científico publicado en 2011

XGSA: A statistical method for cross-species gene set analysis

artículo científico

hiHMM: Bayesian non-parametric joint inference of chromatin state maps

artículo científico publicado en 2015

iSyTE 2.0: a database for expression-based gene discovery in the eye.

artículo científico publicado en 2017

iSyTE: integrated Systems Tool for Eye gene discovery.

artículo científico publicado en 2012

Lista de obras de Joshua Ho

A Screening Approach to Identify Clinically Actionable Variants Causing Congenital Heart Disease in Exome Data

A Wnt-Bmp Feedback Circuit Controls Intertissue Signaling Dynamics in Tooth Organogenesis ⬇️

A genetic ensemble approach for gene-gene interaction identification

A model selection approach to discover age-dependent gene expression patterns using quantile regression models.

A voting approach to identify a small number of highly predictive genes using multiple classifiers

Aberrant Expression of Circulating MicroRNA Leads to the Dysregulation of Alpha-Synuclein and Other Pathogenic Genes in Parkinson's Disease

An Embryonic and Induced Pluripotent Stem Cell Model for Ovarian Granulosa Cell Development and Steroidogenesis.

An antibody-based leukocyte-capture microarray for the diagnosis of systemic lupus erythematosus.

An innovative approach for testing bioinformatics programs using metamorphic testing

Application of Metamorphic Testing to Supervised Classifiers

Application of a systems approach to study developmental gene regulation

Big data: the elements of good questions, open data, and powerful software

Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site.

Biologically active constituents of the secretome of human W8B2+ cardiac stem cells.

C3: An R package for cross-species compendium-based cell-type identification

CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data

CardiacProfileR: an R package for extraction and visualisation of heart rate profiles from wearable fitness trackers

ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.

Challenges and emerging systems biology approaches to discover how the human gut microbiome impact host physiology

Cisplatin prevents breast cancer metastasis through blocking early EMT and retards cancer growth together with paclitaxel

Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco

Crim1 regulates integrin signaling in murine lens development.

Customising an antibody leukocyte capture microarray for systemic lupus erythematosus: beyond biomarker discovery.

Dam mutants provide improved sensitivity and spatial resolution for profiling transcription factor binding.

Decoding the complex genetic causes of heart diseases using systems biology

Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest.

Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus

Effect of machine learning re-sampling techniques for imbalanced datasets in 18F-FDG PET-based radiomics model on prognostication performance in cohorts of head and neck cancer patients

Enhanced cardiac repair by telomerase reverse transcriptase over-expression in human cardiac mesenchymal stromal cells

Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud

Gene-gene interaction filtering with ensemble of filters

Hactive: a smartphone application for heart rate profiling

Host and microbiome multi-omics integration: applications and methodologies

How to test bioinformatics software?

Identification of active signaling pathways by integrating gene expression and protein interaction data

Identification of clinically actionable variants from genome sequencing of families with congenital heart disease

Identification of satellite cells from anole lizard skeletal muscle and demonstration of expanded musculoskeletal potential

Impact of sequencing depth and read length on single cell RNA sequencing data of T cells.

Impact of sequencing depth in ChIP-seq experiments.

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

Intercalated discs: multiple proteins perform multiple functions in non-failing and failing human hearts.

Light-focusing human micro-lenses generated from pluripotent stem cells model lens development and drug-induced cataract in vitro

Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci.

MQuad enables clonal substructure discovery using single cell mitochondrial variants

Machine learning-coupled combinatorial mutagenesis enables resource-efficient engineering of CRISPR-Cas9 genome editor activities

Male-lineage transmission of an acquired metabolic phenotype induced by grand-paternal obesity

Maternal obesity heritably perturbs offspring metabolism for three generations without serial programming.

Modelling, inference and big data in biophysics.

NAD Deficiency, Congenital Malformations, and Niacin Supplementation.

Network modelling of gene regulation

PBrowse: a web-based platform for real-time collaborative exploration of genomic data.

Scalability and Validation of Big Data Bioinformatics Software

Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.

Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury

Targeted next-generation sequencing identifies pathogenic variants in familial congenital heart disease

Testing and Validating Machine Learning Classifiers by Metamorphic Testing

The Short Isoform of the CEACAM1 Receptor in Intestinal T Cells Regulates Mucosal Immunity and Homeostasis via Tfh Cell Induction ⬇️

The method to quantify cell elasticity based on the precise measurement of pressure inducing cell deformation in microfluidic channels

Ultrafast clustering of single-cell flow cytometry data using FlowGrid

Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie

Verification of phylogenetic inference programs using metamorphic testing.

XGSA: A statistical method for cross-species gene set analysis

hiHMM: Bayesian non-parametric joint inference of chromatin state maps

iSyTE 2.0: a database for expression-based gene discovery in the eye.

iSyTE: integrated Systems Tool for Eye gene discovery.