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Lista de obras de Adam Phillippy

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases

A chromosome-scale assembly of the major African malaria vector Anopheles funestus

scholarly article published 10 December 2018

A chromosome-scale assembly of the major African malaria vector Anopheles funestus

scientific article published on 01 June 2019

A draft human pangenome reference

scientific article published on 10 May 2023

A fast adaptive algorithm for computing whole-genome homology maps

scholarly article by Chirag Jain published in September 2018

A robust benchmark for detection of germline large deletions and insertions

artículo científico publicado en 2020

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

artículo científico publicado en 2019

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

artículo científico publicado en 2018

Assemblathon 1: a competitive assessment of de novo short read assembly methods

artículo científico publicado en 2011

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

artículo científico publicado en 2013

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

artículo científico publicado en 2015

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

article

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

scientific article published on 02 August 2019

Author Correction: A robust benchmark for detection of germline large deletions and insertions

artículo científico publicado en 2020

Automated ensemble assembly and validation of microbial genomes

artículo científico publicado en 2014

Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation

artículo científico publicado en 2011

Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life

artículo científico publicado en 2022

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

artículo científico publicado en 2017

Comparative genome assembly

artículo científico publicado en 2004

Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever

scientific article published on 13 February 2014

Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle

artículo científico publicado en 2013

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever

artículo científico publicado en 2014

Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923.

artículo científico publicado en 2014

Complete genomic and epigenetic maps of human centromeres

artículo científico publicado en 2022

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

artículo científico publicado en 2021

Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis

artículo científico publicado en 2011

Comprehensive DNA signature discovery and validation

artículo científico publicado en 2007

De Novo assembly of the goldfish ( Carassius auratus ) genome and the evolution of genes after whole genome duplication

article

De novo assembly of haplotype-resolved genomes with trio binning

article

De novo assembly of the cattle reference genome with single-molecule sequencing

artículo científico publicado en 2020

De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication.

artículo científico publicado en 2019

Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station.

artículo científico publicado en 2017

Effect of sequence depth and length in long-read assembly of the maize inbred NC358

artículo científico publicado en 2020

Efficient oligonucleotide probe selection for pan-genomic tiling arrays

artículo científico publicado en 2009

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

artículo científico publicado en 2017

Evolution of genes and genomes on the Drosophila phylogeny

artículo científico publicado en 2007

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

artículo científico publicado en 2020

Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C

artículo científico publicado en 2021

Fast algorithms for large-scale genome alignment and comparison ⬇️

artículo científico publicado en 2002

From telomere to telomere: The transcriptional and epigenetic state of human repeat elements

artículo científico publicado en 2022

GAGE: A critical evaluation of genome assemblies and assembly algorithms

artículo científico publicado en 2012

Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis

artículo científico publicado en 2013

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

artículo científico publicado en 2005

Genome assembly forensics: finding the elusive mis-assembly

artículo científico publicado en 2008

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.

artículo científico publicado en 2008

Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs

scientific article published on 04 August 2020

Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity

artículo científico publicado en 2011

HLA*LA - HLA typing from linearly projected graph alignments

artículo científico publicado en 2019

HLA*PRG:LA - HLA typing from linearly projected graph alignments

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

artículo científico publicado en 2020

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies

artículo científico publicado en 2011

Hawkeye: an interactive visual analytics tool for genome assemblies

artículo científico publicado en 2007

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

scientific article published on 14 August 2020

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

scientific article published in Nature Communications

High-coverage sequencing and annotated assemblies of the budgerigar genome

artículo científico publicado en 2014

Hybrid error correction and de novo assembly of single-molecule sequencing reads

artículo científico publicado en 2012

Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru

artículo científico publicado en 2016

Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control

Improved reference genome of Aedes aegypti informs arbovirus vector control

scientific article published in Nature

Increased mutation and gene conversion within human segmental duplications

scientific article published on 10 May 2023

Insignia: a DNA signature search web server for diagnostic assay development

artículo científico publicado en 2009

Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray

artículo científico publicado en 2010

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

artículo científico publicado en 2019

Interactive metagenomic visualization in a Web browser

artículo científico publicado en 2011

Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

artículo científico publicado en 2012

Leveraging evolutionary relationships to improve Anopheles genome assemblies

Long-read, whole-genome shotgun sequence data for five model organisms

artículo científico publicado en 2014

MUMmer4: A fast and versatile genome alignment system

artículo científico publicado en 2018

Mash Screen: high-throughput sequence containment estimation for genome discovery

artículo científico publicado en 2019

Mash: fast genome and metagenome distance estimation using MinHash

artículo científico publicado en 2016

MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

artículo científico publicado en 2013

MetaMaps - Strain-level metagenomic assignment and compositional estimation for long reads

article

Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe

artículo científico publicado en 2012

Nanopore sequencing and assembly of a human genome with ultra-long reads.

artículo científico publicado en 2018

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

artículo científico publicado en 2020

New advances in sequence assembly

artículo científico publicado en 2017

New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes

scientific article published on 19 December 2019

One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly

artículo científico publicado en 2014

Platypus and echidna genomes reveal mammalian biology and evolution

artículo científico publicado en 2021

Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

artículo científico publicado en 2010

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes

artículo científico publicado en 2016

Reducing assembly complexity of microbial genomes with single-molecule sequencing

artículo científico publicado en 2013

RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

Reference genome and demographic history of the most endangered marine mammal, the vaquita

artículo científico publicado en 2020

Reply to 'Errors in long-read assemblies can critically affect protein prediction'

artículo científico publicado en 2019

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

artículo científico publicado en 2017

Standards recommendations for the Earth BioGenome Project

artículo científico publicado en 2022

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

scientific article published on 11 July 2019

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

scientific article published on 08 January 2020

Strategic vision for improving human health at The Forefront of Genomics

artículo científico publicado en 2020

Telomere-to-telomere assembly of a complete human X chromosome

artículo científico publicado en 2020

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

artículo científico publicado en 2014

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

artículo científico publicado en 2016

The complete sequence of a human Y chromosome

The complete sequence of a human genome

artículo científico publicado en 2022

The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation

scientific article published on 09 February 2017

The rise of a digital immune system

artículo científico publicado en 2012

The structure, function and evolution of a complete human chromosome 8

artículo científico publicado en 2021

Transcriptomic responses of Salmonella enterica serovars Enteritidis and Typhimurium to chlorine-based oxidative stress

artículo científico publicado en 2010

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

artículo científico publicado en 2011

Using MUMmer to identify similar regions in large sequence sets

artículo científico publicado en 2003

Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing

article

Versatile and open software for comparing large genomes

artículo científico publicado en 2004

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