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A TET homologue protein from Coprinopsis cinerea (CcTET) that biochemically converts 5-methylcytosine to 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxylcytosine

artículo científico publicado en 2014

A hemolytic pigment of Group B Streptococcus allows bacterial penetration of human placenta

artículo científico publicado en 2013

A multidomain adhesion protein family expressed in Plasmodium falciparum is essential for transmission to the mosquito

artículo científico publicado en 2004

A new family of polymerases related to superfamily A DNA polymerases and T7-like DNA-dependent RNA polymerases

artículo científico publicado en 2008

A non-hemolytic Group B Streptococcus strain exhibits hypervirulence

artículo científico publicado en 2017

A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain

artículo científico publicado en 2004

A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems ⬇️

artículo científico publicado en 2011

A novel superfamily containing the beta-grasp fold involved in binding diverse soluble ligands

artículo científico publicado en 2007

A structural basis for antigen recognition by the T cell-like lymphocytes of sea lamprey

artículo científico publicado en 2010

ALOG domains: provenance of plant homeotic and developmental regulators from the DNA-binding domain of a novel class of DIRS1-type retroposons

artículo científico publicado en 2012

Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification

artículo científico publicado en 2015

Adhesion molecules and other secreted host-interaction determinants in Apicomplexa: insights from comparative genomics

artículo científico publicado en 2007

Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins

artículo científico publicado en 2009

Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation

artículo científico publicado en 2008

Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins

artículo científico publicado en 2003

Assessment of penetrance and expressivity of RNAi-mediated silencing of the Arabidopsis phytoene desaturase gene

artículo científico publicado en 2005

BEN: a novel domain in chromatin factors and DNA viral proteins

artículo científico publicado en 2008

Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms

artículo científico publicado en 2012

CHAPTER 11. The TET/JBP Family of Nucleic Acid Base-Modifying 2-Oxoglutarate and Iron-Dependent Dioxygenases

Classification and evolutionary history of the single-strand annealing proteins, RecT, Redbeta, ERF and RAD52

artículo científico publicado en 2002

Common origin of four diverse families of large eukaryotic DNA viruses

artículo científico publicado en 2001

Comparative analysis of apicomplexa and genomic diversity in eukaryotes

artículo científico publicado en 2004

Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling

artículo científico publicado en 2015

Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes

artículo científico publicado en 2000

Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems

artículo científico publicado en 2007

Comparative genomics and structural biology of the molecular innovations of eukaryotes

artículo científico publicado en 2006

Comparative genomics of protists: new insights into the evolution of eukaryotic signal transduction and gene regulation

artículo científico publicado en 2007

Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging

artículo científico publicado en 2004

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

artículo científico publicado en 2007

Comparison of transcription regulatory interactions inferred from high-throughput methods: what do they reveal?

artículo científico publicado en 2008

Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast

artículo científico publicado en 2006

Comprehensive classification of ABC ATPases and their functional radiation in nucleoprotein dynamics and biological conflict systems

artículo científico publicado en 2020

Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA.

artículo científico publicado en 2013

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

artículo científico publicado en 2009

Corrigendum: The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene

artículo científico publicado en 2020

Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily

artículo científico publicado en 2002

Discovery of Novel DENN Proteins: Implications for the Evolution of Eukaryotic Intracellular Membrane Structures and Human Disease

artículo científico publicado en 2012

Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains

artículo científico publicado en 2005

Diversification of AID/APOBEC-like deaminases in metazoa: multiplicity of clades and widespread roles in immunity.

artículo científico publicado en 2018

Diversity and Function of Adaptive Immune Receptors in a Jawless Vertebrate

artículo científico publicado en 2005

Diversity and evolution of chromatin proteins encoded by DNA viruses

artículo científico publicado en 2009

Domain architectures of the Scm3p protein provide insights into centromere function and evolution

artículo científico publicado en 2007

Estimating the prevalence and regulatory potential of the telomere looping effect in yeast transcription regulation

artículo científico publicado en 2006

Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase

artículo científico publicado en 2007

Evolution of Eukaryotic Chromatin Proteins and Transcription Factors

Evolution of bacterial RNA polymerase: implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer

artículo científico publicado en 2004

Evolution of cell–cell signaling in animals: did late horizontal gene transfer from bacteria have a role?

artículo científico publicado en 2004

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems

artículo científico publicado en 2011

Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases

artículo científico publicado en 2003

Evolutionary convergence and divergence in archaeal chromosomal proteins and Chromo-like domains from bacteria and eukaryotes

artículo científico publicado en 2018

Evolutionary genomics of nucleo-cytoplasmic large DNA viruses

artículo científico publicado en 2006

Expansions, diversification, and interindividual copy number variations of AID/APOBEC family cytidine deaminase genes in lampreys

artículo científico publicado en 2018

Extensive domain shuffling in transcription regulators of DNA viruses and implications for the origin of fungal APSES transcription factors

artículo científico publicado en 2002

Functional Innovation in the Evolution of the Calcium-Dependent System of the Eukaryotic Endoplasmic Reticulum

artículo científico publicado en 2020

Functional diversification of the RING finger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system

artículo científico publicado en 2011

GREB1: An evolutionarily conserved protein with a glycosyltransferase domain links ERα glycosylation and stability to cancer

artículo científico publicado en 2021

Gene Networks and Chromatin and Transcriptional Regulation of the Phaseolin Promoter in Arabidopsis ⬇️

artículo científico publicado el 19 de julio de 2013

Gene flow and biological conflict systems in the origin and evolution of eukaryotes

artículo científico publicado en 2012

Genomic donor cassette sharing during VLRA and VLRC assembly in jawless vertebrates

artículo científico publicado en 2014

HPC2 and ubinuclein define a novel family of histone chaperones conserved throughout eukaryotes ⬇️

artículo científico publicado en 2009

Highly-regulated, diversifying NTP-based biological conflict systems with implications for emergence of multicellularity

artículo científico publicado en 2020

Identification of the prokaryotic ligand-gated ion channels and their implications for the mechanisms and origins of animal Cys-loop ion channels

artículo científico publicado en 2005

Incarnation of classical pro- and eukaryotic mechanisms of mutagenesis in hypermutagenesis and immunity of vertebrates

Insights from the architecture of the bacterial transcription apparatus

artículo científico publicado en 2012

Intraproteomic networks: new forays into predicting interaction partners

artículo científico publicado en 2002

Isolation of DNA from the centromere of human chromosome 7 by microdissection

artículo científico publicado el 1 de junio de 1997

Lineage-specific expansions of TET/JBP genes and a new class of DNA transposons shape fungal genomic and epigenetic landscapes

artículo científico publicado en 2014

Multiple enzymatic activities of ParB/Srx superfamily mediate sexual conflict among conjugative plasmids

artículo científico publicado en 2014

MutL homologs in restriction-modification systems and the origin of eukaryotic MORC ATPases

artículo científico publicado en 2008

Mycobacterium tuberculosis Rv0991c Is a Redox-Regulated Molecular Chaperone

artículo científico publicado en 2020

Natural history of eukaryotic DNA methylation systems

artículo científico publicado en 2011

Natural history of the E1-like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation

artículo científico publicado en 2009

Natural history of the eukaryotic chromatin protein methylation system

artículo científico publicado en 2011

Novel autoproteolytic and DNA-damage sensing components in the bacterial SOS response and oxidized methylcytosine-induced eukaryotic DNA demethylation systems

artículo científico publicado en 2013

Novel predicted peptidases with a potential role in the ubiquitin signaling pathway

artículo científico publicado en 2004

Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase

artículo científico publicado en 2010

Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members

artículo científico publicado en 2005

Plasmodium biology: genomic gleanings

artículo científico publicado en 2003

Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics

artículo científico publicado en 2012

Polyvalent Proteins, a Pervasive Theme in the Intergenomic Biological Conflicts of Bacteriophages and Conjugative Elements

artículo científico publicado en 2017

Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis

artículo científico publicado en 2010

Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids

artículo científico publicado en 2009

Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains

artículo científico publicado en 2010

Proteasomal control of cytokinin synthesis protects Mycobacterium tuberculosis against nitric oxide

scientific journal article

Protein and DNA modifications: evolutionary imprints of bacterial biochemical diversification and geochemistry on the provenance of eukaryotic epigenetics

artículo científico publicado en 2014

Provenance of SET-domain histone methyltransferases through duplication of a simple structural unit.

artículo científico publicado en 2003

Quod erat demonstrandum?The mystery of experimental validation of apparently erroneous computational analyses of protein sequences ⬇️

artículo científico publicado el 13 de noviembre de 2001

Reconstructing the ubiquitin network: cross-talk with other systems and identification of novel functions

artículo científico publicado en 2009

Resilience of biochemical activity in protein domains in the face of structural divergence

artículo científico publicado en 2014

Scores of RINGS but No PHDs in Ubiquitin Signaling ⬇️

artículo científico publicado el 1 de marzo de 2003

Selection of the lamprey VLRC antigen receptor repertoire

artículo científico publicado en 2014

Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea

artículo científico publicado en 2014

Small but versatile: the extraordinary functional and structural diversity of the beta-grasp fold

artículo científico publicado en 2007

Structure and Evolution of Ubiquitin and Ubiquitin-Related Domains

Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen

artículo científico publicado en 2009

Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing

artículo científico publicado en 2012

The ASCH superfamily: novel domains with a fold related to the PUA domain and a potential role in RNA metabolism

artículo científico publicado en 2005

The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains

artículo científico publicado en 2009

The DOMON domains are involved in heme and sugar recognition

artículo científico publicado en 2007

The HARE-HTH and associated domains: novel modules in the coordination of epigenetic DNA and protein modifications

artículo científico publicado en 2012

The HIRAN domain and recruitment of chromatin remodeling and repair activities to damaged DNA.

artículo científico publicado en 2006

The SWIRM domain: a conserved module found in chromosomal proteins points to novel chromatin-modifying activities

artículo científico publicado en 2002

The catalytic core of DEMETER guides active DNA demethylation in Arabidopsis

scientific article published on 13 August 2019

The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates

artículo científico publicado en 2002

The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene

artículo científico publicado en 2019

The emergence of catalytic and structural diversity within the beta-clip fold

artículo científico publicado en 2004

The many faces of the helix-turn-helix domain: transcription regulation and beyond

artículo científico publicado en 2005

The natural history of ADP-ribosyltransferases and the ADP-ribosylation system

artículo científico publicado en 2015

The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons

artículo científico publicado en 2006

The natural history of ubiquitin and ubiquitin-related domains

artículo científico

The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains

artículo científico publicado en 2006

The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism ⬇️

artículo científico publicado el 8 de septiembre de 2003

The unexpected provenance of components in eukaryotic nucleotide-excision-repair and kinetoplast DNA-dynamics from bacterial mobile elements

article

Transcription factors, chromatin proteins and the diversification of Hemiptera

artículo científico publicado en 2015

Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors

artículo científico publicado en 2016

Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes

artículo científico publicado en 2013

Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks

artículo científico publicado en 2006

Unexpected Evolution of Lesion-Recognition Modules in Eukaryotic NER and Kinetoplast DNA Dynamics Proteins from Bacterial Mobile Elements

scientific article published on 23 October 2018

Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination

artículo científico publicado en 2008

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