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Lista de obras de Guillaume Bourque

A call for benchmarking transposable element annotation methods

artículo científico publicado en 2015

A coordinated progression of progenitor cell states initiates urinary tract development

artículo científico publicado en 2021

A draft human pangenome reference

scientific article published on 10 May 2023

A population-based LD map of the human chromosome 6p.

artículo científico publicado en 2005

A replication study for association of 53 single nucleotide polymorphisms in ScoliScore test with adolescent idiopathic scoliosis in French-Canadian population

artículo científico publicado en 2015

A systems biology approach identifies candidate drugs to reduce mortality in severely ill patients with COVID-19

artículo científico publicado en 2022

ABCA7 rare variants and Alzheimer disease risk

artículo científico publicado en 2016

Author Correction: Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy

artículo científico publicado en 2020

Benefits and barriers in the design of harmonized access agreements for international data sharing

scientific article published on 02 December 2019

CTCF-mediated functional chromatin interactome in pluripotent cells

artículo científico publicado en 2011

Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages

artículo científico publicado en 2004

Comparing Apples to Apples and Oranges to Oranges

artículo científico publicado en 2018

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

artículo científico publicado en 2011

Computational tools for the analysis of rearrangements in mammalian genomes

scientific article published on January 2008

Computational tools for the analysis of rearrangements in mammalian genomes

artículo científico publicado en 2008

Computational tools to unmask transposable elements

artículo científico publicado en 2018

Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes

artículo científico publicado en 2011

Conserved expression of transposon-derived non-coding transcripts in primate stem cells

artículo científico publicado en 2017

Contribution to Alzheimer's disease risk of rare variants in TREM2, SORL1, and ABCA7 in 1779 cases and 1273 controls

artículo científico publicado en 2017

Control of embryonic stem cell self-renewal and differentiation via coordinated alternative splicing and translation of YY2

artículo científico publicado en 2016

CpG deamination creates transcription factor-binding sites with high efficiency

artículo científico publicado en 2011

Developmental genome-wide DNA methylation asymmetry between mouse placenta and embryo

artículo científico publicado en 2020

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

artículo científico publicado en 2005

Ecotopic viral integration site 1 (EVI1) regulates multiple cellular processes important for cancer and is a synergistic partner for FOS protein in invasive tumors

artículo científico publicado en 2012

Epigenome data release: a participant-centered approach to privacy protection

artículo científico publicado en 2015

Evolution of the mammalian transcription factor binding repertoire via transposable elements

artículo científico publicado en 2008

Evolving data access policy: The Canadian context

artículo científico publicado en 2016

Functional characterization of the human dendritic cell immunodeficiency associated with the IRF8(K108E) mutation

scientific journal article

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome

artículo científico publicado en 2017

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)

artículo científico publicado en 2007

GA4GH: International policies and standards for data sharing across genomic research and healthcare

artículo científico publicado en 2021

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

artículo científico publicado en 2016

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

artículo científico publicado en 2004

Genome-scale evolution: reconstructing gene orders in the ancestral species.

artículo científico publicado en 2002

Genome-wide microhomologies enable precise template-free editing of biologically relevant deletion mutations

artículo científico publicado en 2019

Genomewide expression profiling in the zebrafish embryo identifies target genes regulated by Hedgehog signaling during vertebrate development

artículo científico publicado en 2006

Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations

artículo científico publicado en 2014

Global characterization of copy number variants in epilepsy patients from whole genome sequencing.

artículo científico publicado en 2018

High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies

artículo científico publicado en 2017

High-dose folic acid supplementation alters the human sperm methylome and is influenced by the MTHFR C677T polymorphism

artículo científico publicado en 2015

Human copy number variants are enriched in regions of low mappability

Human copy number variants are enriched in regions of low mappability

Identification of Elongated Primary Cilia with Impaired Mechanotransduction in Idiopathic Scoliosis Patients

scientific article published on 14 March 2017

Identifying co-opted transposable elements using comparative epigenomics

artículo científico publicado en 2018

Immunoseq: the identification of functionally relevant variants through targeted capture and sequencing of active regulatory regions in human immune cells

artículo científico publicado en 2016

Improving gene network inference by comparing expression time-series across species, developmental stages or tissues.

artículo científico publicado en 2004

In Silico Methods to Identify Exapted Transposable Element Families

artículo científico publicado en 2016

In silico tandem affinity purification refines an Oct4 interaction list

artículo científico publicado en 2011

Inferring direct regulatory targets of a transcription factor in the DREAM2 challenge

artículo científico

Initial sequence and comparative analysis of the cat genome

artículo científico publicado en 2007

Integrated (epi)-Genomic Analyses Identify Subgroup-Specific Therapeutic Targets in CNS Rhabdoid Tumors

artículo científico publicado en 2016

K27M mutation in histone H3.3 defines clinically and biologically distinct subgroups of pediatric diffuse intrinsic pontine gliomas

artículo científico publicado en 2012

Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma

artículo científico publicado en 2017

Loss of the zona pellucida-binding protein 2 (Zpbp2) gene in mice impacts airway hypersensitivity and lung lipid metabolism in a sex-dependent fashion.

artículo científico publicado en 2018

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis.

artículo científico publicado en 2018

Mobile genetic elements and genome evolution 2014

Molecular and genetic crosstalks between mTOR and ERRα are key determinants of rapamycin-induced nonalcoholic fatty liver

artículo científico publicado en 2013

Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines

artículo científico publicado en 2011

Molecular convergence of neurodevelopmental disorders

artículo científico publicado en 2014

Mouse ENU Mutagenesis to Understand Immunity to Infection: Methods, Selected Examples, and Perspectives

artículo científico publicado en 2014

Multiplatform genome-wide identification and modeling of functional human estrogen receptor binding sites

artículo científico publicado en 2006

Nuclear mTOR acts as a transcriptional integrator of the androgen signaling pathway in prostate cancer

artículo científico publicado en 2017

Optimization of temporal versus spatial replication in the development of habitat use models to explain among-reach variations of fish density estimates in rivers

Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning

artículo científico publicado en 2016

PPARG binding landscapes in macrophages suggest a genome-wide contribution of PU.1 to divergent PPARG binding in human and mouse

artículo científico publicado en 2012

Paired rRNA-depleted and polyA-selected RNA sequencing data and supporting multi-omics data from human T cells

scientific article published on 09 November 2020

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

artículo científico publicado en 2020

Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation

artículo científico publicado en 2015

RNA-Seq as a Tool to Study the Tumor Microenvironment

artículo científico publicado en 2016

Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes

artículo científico

Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps

artículo científico publicado en 2003

Recovering genome rearrangements in the mammalian phylogeny

artículo científico publicado en 2009

Regulation of estrogen receptor-mediated long range transcription via evolutionarily conserved distal response elements

artículo científico publicado en 2008

Screening of dementia genes by whole-exome sequencing in early-onset Alzheimer disease: input and lessons

artículo científico publicado en 2015

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

artículo científico publicado en 2004

Sex Chromosomes and Sex Phenotype Contribute to Biased DNA Methylation in Mouse Liver

scientific article published on 09 June 2020

Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy

artículo científico publicado en 2020

Single-cell analysis of human adipose tissue identifies depot and disease specific cell types

scientific article published on 23 December 2019

Stalled developmental programs at the root of pediatric brain tumors

scientific article published on 25 November 2019

Success in the DREAM3 signaling response challenge using simple weighted-average imputation: lessons for community-wide experiments in systems biology

artículo científico publicado en 2010

Ten things you should know about transposable elements

artículo científico publicado en 2018

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease

artículo científico publicado en 2016

The Effects of Regional Hydrologic Alteration on Fish Community Structure in Regulated Rivers

The International Human Epigenome Consortium Data Portal

artículo científico publicado en 2016

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

scientific journal article

The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction

artículo científico publicado en 2006

The majority of primate-specific regulatory sequences are derived from transposable elements

artículo científico publicado en 2013

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity

artículo científico publicado en 2014

Transcriptional consequences of genomic structural aberrations in breast cancer

artículo científico publicado en 2011

Transient DNMT1 suppression reveals hidden heritable marks in the genome

artículo científico publicado en 2015

Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs

artículo científico publicado en 2013

Transposable elements have rewired the core regulatory network of human embryonic stem cells

artículo científico publicado en 2010

Transposable elements in gene regulation and in the evolution of vertebrate genomes

artículo científico publicado en 2009

Ultrafast functional profiling of RNA-seq data for nonmodel organisms

artículo científico publicado en 2021

Using fish guilds to assess community responses to temperature and flow regimes in unregulated and regulated Canadian rivers

article

Variation in genomic landscape of clear cell renal cell carcinoma across Europe

artículo científico publicado en 2014

Very long intergenic non-coding RNA transcripts and expression profiles are associated to specific childhood acute lymphoblastic leukemia subtypes

artículo científico publicado en 2018

Whole-Genome Cartography of Estrogen Receptorα Binding Sites

Whole-genome cartography of estrogen receptor alpha binding sites

artículo científico publicado en 2007

Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells

artículo científico publicado en 2007

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

artículo científico publicado en 2011

eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data

scientific article published on 01 November 2019

eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data

artículo científico publicado en 2016

webMGR: an online tool for the multiple genome rearrangement problem

artículo científico publicado en 2009