Lista de obras - Kevin Bretonnel Cohen - Dominio Público Uruguay

A Controlled Trial Using Natural Language Processing to Examine the Language of Suicidal Adolescents in the Emergency Department.

artículo científico publicado en 2015

A Machine Learning Approach to Identifying Changes in Suicidal Language

artículo científico publicado en 2020

A Machine Learning Approach to Identifying the Thought Markers of Suicidal Subjects: A Prospective Multicenter Trial

artículo científico publicado en 2016

A Modular Ontology for Modeling Service Provision in a Communication Network for Coordination of Care

A Primer to the Structure, Content and Linkage of the FDA's Manufacturer and User Facility Device Experience (MAUDE) Files.

artículo científico publicado en 2017

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

artículo científico publicado en 2012

A critical review of PASBio's argument structures for biomedical verbs

artículo científico publicado en 2006

A fault model for ontology mapping, alignment, and linking systems.

artículo científico publicado en 2007

A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support

artículo científico

An open-source framework for large-scale, flexible evaluation of biomedical text mining systems

artículo científico publicado en 2008

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

artículo científico publicado en 2013

Applied Text Mining

Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals

artículo científico publicado en 2014

BioC: a minimalist approach to interoperability for biomedical text processing

artículo científico publicado en 2013

BioCreAtIvE task1A: entity identification with a stochastic tagger

artículo científico publicado en 2005

BioCreative-2012 virtual issue

artículo científico publicado en 2012

BioCreative-IV virtual issue

artículo científico publicado en 2014

BioHackathon 2015: Semantics of data for life sciences and reproducible research

artículo científico publicado en 2020

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

artículo científico publicado en 2014

Biomedical language processing: what's beyond PubMed?

artículo científico publicado en 2006

Chapter 16: text mining for translational bioinformatics

artículo científico publicado en 2013

Clinical Information Extraction at the CLEF eHealth Evaluation lab 2016.

artículo científico publicado en 2016

Combining heterogenous data for prediction of disease related and pharmacogenes

artículo científico publicado en 2014

Concept annotation in the CRAFT corpus

artículo científico publicado en 2012

Concept recognition for extracting protein interaction relations from biomedical text

artículo científico publicado en 2008

Contrast and variability in gene names

article

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles

artículo científico publicado en 2017

Corpus design for biomedical natural language processing

scholarly article published 2005

Corpus refactoring: a feasibility study

artículo científico publicado en 2007

Crowdsourcing and curation: perspectives from biology and natural language processing

artículo científico publicado en 2016

Current issues in biomedical text mining and natural language processing

artículo científico publicado en 2009

Editor's introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6)

scientific article published on 24 June 2020

Empirical data on corpus design and usage in biomedical natural language processing.

artículo científico publicado en 2005

Erratum to: Replicability and reproducibility of research results for human language technology: introducing an LRE special section

scholarly article published in Language Resources and Evaluation

Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.

artículo científico publicado en 2006

Exploring species-based strategies for gene normalization.

artículo científico publicado en 2010

Finding GeneRIFs via gene ontology annotations.

artículo científico publicado en 2006

Frontiers of biomedical text mining: current progress

artículo científico publicado en 2007

GOF/LOF knowledge inference with tensor decomposition in support of high order link discovery for gene, mutation and disease

scientific article published on 01 February 2019

Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition

artículo científico publicado en 2016

GeneRIF quality assurance as summary revision

artículo científico publicado en 2007

Getting started in text mining

artículo científico publicado en 2008

HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA.

artículo científico publicado en 2011

Habitat-Lite: a GSC case study based on free text terms for environmental metadata

artículo científico

High-precision biological event extraction with a concept recognizer

scientific article published in 2009

Implications of compositionality in the gene ontology for its curation and usage

artículo científico

Improving precision in concept normalization

artículo científico publicado en 2018

Integrating text mining into high-throughput assay analysis.

artículo científico publicado en 2010

Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing

artículo científico publicado en 2017

Interpersonal prosodic correlation in frontotemporal dementia

artículo científico publicado en 2019

Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.

artículo científico publicado en 2008

Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining

scientific article published on 27 June 2019

Introduction to the Biomedical Linked Annotation Hackathon (BLAH) 2015 Symposium

artículo científico publicado en 2015

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

artículo científico publicado en 2014

Manual curation is not sufficient for annotation of genomic databases

artículo científico publicado en 2007

MetaMap is a superior baseline to a standard document retrieval engine for the task of finding patient cohorts in clinical free text

scientific article published on 01 January 2011

Methodological Issues in Predicting Pediatric Epilepsy Surgery Candidates Through Natural Language Processing and Machine Learning

artículo científico publicado en 2016

Mining FDA drug labels for medical conditions

artículo científico publicado en 2013

Mining the pharmacogenomics literature--a survey of the state of the art ⬇️

artículo científico publicado el 1 de julio de 2012

MutationFinder: a high-performance system for extracting point mutation mentions from text

artículo científico publicado en 2007

Natural Language Processing and Systems Biology

Natural language processing for rapid response to emergent diseases: Application to calcium channel blockers therapy in hypertensive patients with COVID-19 infection

artículo científico publicado en 2020

Nominalization and alternations in biomedical language

artículo científico publicado en 2008

Ontology quality assurance through analysis of term transformations

artículo científico publicado en 2009

Ontology translation: A case study on translating the Gene Ontology from English to German

article

Open Agile text mining for bioinformatics: the PubAnnotation ecosystem

scientific article published on 01 November 2019

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression

artículo científico publicado en 2008

Overview of BioCreative II gene normalization

artículo científico publicado en 2008

Overview of the BioCreative III Workshop

artículo científico publicado en 2011

P-Hacking Lexical Richness Through Definitions of "Type" and "Token"

scientific article published on 01 August 2019

Parenthetically speaking: classifying the contents of parentheses for text mining.

artículo científico publicado en 2011

Plasma carotenoids and the risk of premalignant breast disease in women aged 50 and younger: a nested case-control study.

artículo científico publicado en 2017

PubAnnotation-query: a search tool for corpora with multi-layers of annotation.

artículo científico publicado en 2015

Rapid pattern development for concept recognition systems: application to point mutations

artículo científico publicado en 2007

Refactoring corpora

Replicability and reproducibility of research results for human language technology: introducing an LRE special section

Reproducibility in Natural Language Processing: A Case Study of Two R Libraries for Mining PubMed/MEDLINE

article published in 2016

Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement

artículo científico publicado en 2017

Sentiment Analysis of Suicide Notes: A Shared Task ⬇️

artículo científico publicado el 30 de enero de 2012

Software testing and the naturally occurring data assumption in natural language processing

article

Sublanguage Corpus Analysis Toolkit: A tool for assessing the representativeness and sublanguage characteristics of corpora

SuperCAT: The (New and Improved) Corpus Analysis Toolkit

article published in 2016

TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK ⬇️

artículo científico publicado el 1 de enero de 2008

Text and data mining for biomedical discovery ⬇️

artículo científico publicado el 1 de enero de 2013

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)

artículo científico publicado en 2009

Text mining for the biocuration workflow

artículo científico publicado en 2012

The compositional structure of Gene Ontology terms.

artículo científico publicado en 2004

The structural and content aspects of abstracts versus bodies of full text journal articles are different

artículo científico publicado en 2010

The textual characteristics of traditional and Open Access scientific journals are similar

artículo científico publicado en 2009

Themes in biomedical natural language processing: BioNLP08.

artículo científico publicado en 2008

Three Dimensions of Reproducibility in Natural Language Processing

Training the next generation of quantitative biologists in the era of big data

Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles

artículo científico publicado en 2017

U-Compare bio-event meta-service: compatible BioNLP event extraction services

artículo científico publicado en 2011

U-Compare: A modular NLP workflow construction and evaluation system

U-Compare: share and compare text mining tools with UIMA

artículo científico publicado en 2009

Visualization and Language Processing for Supporting Analysis across the Biomedical Literature

scholarly article by Carsten Görg et al published 2010 in Lecture Notes in Computer Science

Lista de obras de Kevin Bretonnel Cohen

A Controlled Trial Using Natural Language Processing to Examine the Language of Suicidal Adolescents in the Emergency Department.

A Machine Learning Approach to Identifying Changes in Suicidal Language

A Machine Learning Approach to Identifying the Thought Markers of Suicidal Subjects: A Prospective Multicenter Trial

A Modular Ontology for Modeling Service Provision in a Communication Network for Coordination of Care

A Primer to the Structure, Content and Linkage of the FDA's Manufacturer and User Facility Device Experience (MAUDE) Files.

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

A critical review of PASBio's argument structures for biomedical verbs

A fault model for ontology mapping, alignment, and linking systems.

A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support

An open-source framework for large-scale, flexible evaluation of biomedical text mining systems

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

Applied Text Mining

Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals

BioC: a minimalist approach to interoperability for biomedical text processing

BioCreAtIvE task1A: entity identification with a stochastic tagger

BioCreative-2012 virtual issue

BioCreative-IV virtual issue

BioHackathon 2015: Semantics of data for life sciences and reproducible research

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

Biomedical language processing: what's beyond PubMed?

Chapter 16: text mining for translational bioinformatics

Clinical Information Extraction at the CLEF eHealth Evaluation lab 2016.

Combining heterogenous data for prediction of disease related and pharmacogenes

Concept annotation in the CRAFT corpus

Concept recognition for extracting protein interaction relations from biomedical text

Contrast and variability in gene names

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles

Corpus design for biomedical natural language processing

Corpus refactoring: a feasibility study

Crowdsourcing and curation: perspectives from biology and natural language processing

Current issues in biomedical text mining and natural language processing

Editor's introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6)

Empirical data on corpus design and usage in biomedical natural language processing.

Erratum to: Replicability and reproducibility of research results for human language technology: introducing an LRE special section

Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.

Exploring species-based strategies for gene normalization.

Finding GeneRIFs via gene ontology annotations.

Frontiers of biomedical text mining: current progress

GOF/LOF knowledge inference with tensor decomposition in support of high order link discovery for gene, mutation and disease

Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition

GeneRIF quality assurance as summary revision

Getting started in text mining

HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA.

Habitat-Lite: a GSC case study based on free text terms for environmental metadata

High-precision biological event extraction with a concept recognizer

Implications of compositionality in the gene ontology for its curation and usage

Improving precision in concept normalization

Integrating text mining into high-throughput assay analysis.

Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing

Interpersonal prosodic correlation in frontotemporal dementia

Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.

Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining

Introduction to the Biomedical Linked Annotation Hackathon (BLAH) 2015 Symposium

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

Manual curation is not sufficient for annotation of genomic databases

MetaMap is a superior baseline to a standard document retrieval engine for the task of finding patient cohorts in clinical free text

Methodological Issues in Predicting Pediatric Epilepsy Surgery Candidates Through Natural Language Processing and Machine Learning

Mining FDA drug labels for medical conditions

Mining the pharmacogenomics literature--a survey of the state of the art ⬇️

MutationFinder: a high-performance system for extracting point mutation mentions from text

Natural Language Processing and Systems Biology

Natural Language Processing and Systems Biology

Natural language processing for rapid response to emergent diseases: Application to calcium channel blockers therapy in hypertensive patients with COVID-19 infection

Nominalization and alternations in biomedical language

Ontology quality assurance through analysis of term transformations

Ontology translation: A case study on translating the Gene Ontology from English to German

Open Agile text mining for bioinformatics: the PubAnnotation ecosystem

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression

Overview of BioCreative II gene normalization

Overview of the BioCreative III Workshop

P-Hacking Lexical Richness Through Definitions of "Type" and "Token"

Parenthetically speaking: classifying the contents of parentheses for text mining.

Plasma carotenoids and the risk of premalignant breast disease in women aged 50 and younger: a nested case-control study.

PubAnnotation-query: a search tool for corpora with multi-layers of annotation.

Rapid pattern development for concept recognition systems: application to point mutations

Refactoring corpora

Refactoring corpora

Replicability and reproducibility of research results for human language technology: introducing an LRE special section

Reproducibility in Natural Language Processing: A Case Study of Two R Libraries for Mining PubMed/MEDLINE