Lista de obras - Karoline Faust - Dominio Público Uruguay

A web application for sample size and power calculation in case-control microbiome studies.

artículo científico publicado en 2016

Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations.

artículo científico publicado en 2018

Can we predict keystones?

scientific article published on 01 March 2019

CoNet app: inference of biological association networks using Cytoscape.

artículo científico publicado en 2016

Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil

scholarly article by Honggui Wang et al published February 2017 in Soil Biology and Biochemistry

Computational approaches to predict bacteriophage-host relationships.

artículo científico publicado en 2015

Consumer Safety Considerations of Skin and Oral Microbiome Perturbation

artículo científico publicado en 2019

Correction: Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

artículo científico publicado en 2019

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

artículo científico publicado en 2016

Cross-biome comparison of microbial association networks

artículo científico publicado en 2015

Fast and flexible analysis of linked microbiome data with mako

artículo científico publicado en 2021

From hairballs to hypotheses-biological insights from microbial networks

artículo científico publicado en 2018

Genetic correlation network prediction of forest soil microbial functional organization

scientific article published on 25 July 2018

Gut microbiota dynamics and uraemic toxins: one size does not fit all

artículo científico publicado en 2018

Host-microbe interaction: Rules of the game for microbiota

artículo científico publicado en 2016

Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts

artículo científico publicado en 2012

Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

artículo científico publicado en 2018

Metabolic Pathfinding Using RPAIR Annotation

Metagenomics meets time series analysis: unraveling microbial community dynamics

artículo científico publicado en 2015

Microbial Consortium Design Benefits from Metabolic Modeling

scientific article published on 23 November 2018

Microbial co-occurrence relationships in the human microbiome

artículo científico publicado en 2012

Microbial communities as dynamical systems

scientific article published on 21 July 2018

Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes

artículo científico publicado en 2016

Multi-stability and the origin of microbial community types

artículo científico publicado en 2017

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways

artículo científico publicado en 2008

Network Analysis Tools: from biological networks to clusters and pathways

artículo científico publicado en 2008

Ocean plankton. Determinants of community structure in the global plankton interactome

artículo científico publicado en 2015

Predicting Metabolic Pathways by Sub-network Extraction ⬇️

artículo científico publicado el 1 de enero de 2012

Prediction of metabolic pathways from genome-scale metabolic networks.

artículo científico publicado en 2011

Quantifying the impact of ecological memory on the dynamics of interacting communities

artículo científico publicado en 2022

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics ⬇️

artículo científico publicado en 2020

Signatures of ecological processes in microbial community time series.

artículo científico publicado en 2018

Soil microbiome responses to the short-term effects of Amazonian deforestation.

artículo científico publicado en 2015

Species-sorting and mass-transfer paradigms control managed natural metacommunities

artículo científico publicado en 2016

Structure of association networks in food bacterial communities

artículo científico publicado en 2017

Structure, function and diversity of the healthy human microbiome

artículo científico publicado en 2012

Synthetic ecology of the human gut microbiota

artículo científico publicado en 2019

Temporal variability in quantitative human gut microbiome profiles and implications for clinical research

artículo científico publicado en 2021

The Dynamic of a River Model Bacterial Community in Two Different Media Reveals a Divergent Succession and an Enhanced Growth of Most Strains Compared to Monocultures

scientific article published on 24 January 2019

The virota and its transkingdom interactions in the healthy infant gut

artículo científico publicado en 2022

Towards a Better Understanding of Microbial Community Dynamics through High-Throughput Cultivation and Data Integration

artículo científico publicado en 2019

manta: a Clustering Algorithm for Weighted Ecological Networks

artículo científico publicado en 2020

Lista de obras de Karoline Faust

A web application for sample size and power calculation in case-control microbiome studies.

Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations.

Can we predict keystones?

CoNet app: inference of biological association networks using Cytoscape.

Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil

Computational approaches to predict bacteriophage-host relationships.

Consumer Safety Considerations of Skin and Oral Microbiome Perturbation

Correction: Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

Cross-biome comparison of microbial association networks

Fast and flexible analysis of linked microbiome data with mako

From hairballs to hypotheses-biological insights from microbial networks

Genetic correlation network prediction of forest soil microbial functional organization

Gut microbiota dynamics and uraemic toxins: one size does not fit all

Host-microbe interaction: Rules of the game for microbiota

Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts

Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

Metabolic Pathfinding Using RPAIR Annotation

Metagenomics meets time series analysis: unraveling microbial community dynamics

Microbial Consortium Design Benefits from Metabolic Modeling

Microbial co-occurrence relationships in the human microbiome

Microbial communities as dynamical systems

Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes

Multi-stability and the origin of microbial community types

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways

Network Analysis Tools: from biological networks to clusters and pathways

Ocean plankton. Determinants of community structure in the global plankton interactome

Predicting Metabolic Pathways by Sub-network Extraction ⬇️

Prediction of metabolic pathways from genome-scale metabolic networks.

Quantifying the impact of ecological memory on the dynamics of interacting communities

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics ⬇️

Signatures of ecological processes in microbial community time series.

Soil microbiome responses to the short-term effects of Amazonian deforestation.

Species-sorting and mass-transfer paradigms control managed natural metacommunities

Structure of association networks in food bacterial communities

Structure, function and diversity of the healthy human microbiome

Synthetic ecology of the human gut microbiota

Temporal variability in quantitative human gut microbiome profiles and implications for clinical research

The Dynamic of a River Model Bacterial Community in Two Different Media Reveals a Divergent Succession and an Enhanced Growth of Most Strains Compared to Monocultures

The virota and its transkingdom interactions in the healthy infant gut

Towards a Better Understanding of Microbial Community Dynamics through High-Throughput Cultivation and Data Integration

manta: a Clustering Algorithm for Weighted Ecological Networks