Lista de obras - Carl Herrmann - Dominio Público Uruguay

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs.

artículo científico publicado en 2012

A comprehensive comparison of tools for differential ChIP-seq analysis.

artículo científico publicado en 2016

Ab initio identification of putative human transcription factor binding sites by comparative genomics

artículo científico publicado en 2005

Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome

artículo científico publicado en 2021

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

artículo científico publicado en 2020

Clustering proteins from interaction networks for the prediction of cellular functions

artículo científico publicado en 2004

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

artículo científico publicado en 2015

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

artículo científico publicado en 2019

Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children

artículo científico publicado en 2016

Evolutionary conserved gene co-expression drives generation of self-antigen diversity in medullary thymic epithelial cells

artículo científico publicado en 2015

General matter coupled gauged supergravity in five dimensions

Genome-wide DNA-methylation landscape defines specialization of regulatory T cells in tissues.

artículo científico publicado en 2017

Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype

artículo científico publicado en 2020

Identification of DNA methylation changes at cis-regulatory elements during early steps of HSC differentiation using tagmentation-based whole genome bisulfite sequencing

artículo científico publicado en 2014

Identification of cis-regulatory modules encoding temporal dynamics during development.

artículo científico publicado en 2014

Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis.

artículo científico publicado en 2014

Impact of cancer mutational signatures on transcription factor motifs in the human genome

artículo científico publicado en 2019

Integrative Genome-Scale Analysis Identifies Epigenetic Mechanisms of Transcriptional Deregulation in Unfavorable Neuroblastomas

artículo científico publicado en 2016

LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.

artículo científico publicado en 2015

MYCN mediates cysteine addiction and sensitizes neuroblastoma to ferroptosis

scientific article published on 28 April 2022

MYCN-driven regulatory mechanisms controlling LIN28B in neuroblastoma

artículo científico publicado en 2015

MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences

artículo científico publicado en 2015

Myelodysplastic cells in patients reprogram mesenchymal stromal cells to establish a transplantable stem cell niche disease unit

artículo científico publicado en 2014

PrOnto database : GO term functional dissimilarity inferred from biological data

artículo científico publicado en 2015

Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation

artículo científico publicado en 2016

RSAT 2015: Regulatory Sequence Analysis Tools.

artículo científico publicado en 2015

SimCT: a generic tool to visualize ontology-based relationships for biological objects

artículo científico publicado en 2009

Telomerase activation by genomic rearrangements in high-risk neuroblastoma

artículo científico publicado en 2015

Transcriptional and epigenetic signatures of zygotic genome activation during early Drosophila embryogenesis

artículo científico publicado en 2013

Using cisTargetX to predict transcriptional targets and networks in Drosophila.

artículo científico publicado en 2012

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules ⬇️

artículo científico publicado el 20 de junio de 2012

Lista de obras de Carl Herrmann

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs.

A comprehensive comparison of tools for differential ChIP-seq analysis.

Ab initio identification of putative human transcription factor binding sites by comparative genomics

Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Clustering proteins from interaction networks for the prediction of cellular functions

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children

Evolutionary conserved gene co-expression drives generation of self-antigen diversity in medullary thymic epithelial cells

General matter coupled gauged supergravity in five dimensions

Genome-wide DNA-methylation landscape defines specialization of regulatory T cells in tissues.

Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype

Identification of DNA methylation changes at cis-regulatory elements during early steps of HSC differentiation using tagmentation-based whole genome bisulfite sequencing

Identification of cis-regulatory modules encoding temporal dynamics during development.

Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis.

Impact of cancer mutational signatures on transcription factor motifs in the human genome

Integrative Genome-Scale Analysis Identifies Epigenetic Mechanisms of Transcriptional Deregulation in Unfavorable Neuroblastomas

LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.

MYCN mediates cysteine addiction and sensitizes neuroblastoma to ferroptosis

MYCN-driven regulatory mechanisms controlling LIN28B in neuroblastoma

MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences

Myelodysplastic cells in patients reprogram mesenchymal stromal cells to establish a transplantable stem cell niche disease unit

PrOnto database : GO term functional dissimilarity inferred from biological data

Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation

RSAT 2015: Regulatory Sequence Analysis Tools.

SimCT: a generic tool to visualize ontology-based relationships for biological objects

Telomerase activation by genomic rearrangements in high-risk neuroblastoma

Transcriptional and epigenetic signatures of zygotic genome activation during early Drosophila embryogenesis

Using cisTargetX to predict transcriptional targets and networks in Drosophila.

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules ⬇️