Lista de obras - Derek M Bickhart - Dominio Público Uruguay

A PLAG1 mutation contributed to stature recovery in modern cattle.

artículo científico publicado en 2017

A Reference Genome Assembly of American Bison, Bison bison bison

artículo científico publicado en 2021

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus

artículo científico publicado en 2021

A genome-wide association study of calf birth weight in Holstein cattle using single nucleotide polymorphisms and phenotypes predicted from auxiliary traits.

artículo científico publicado en 2014

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle

artículo científico publicado en 2014

A high-resolution whole-genome map of the distinctive epigenomic landscape induced by butyrate in bovine cells

artículo científico publicado en 2014

Analysis of Population-Genetic Properties of Copy Number Variations

artículo científico publicado en 2018

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size

artículo científico publicado en 2017

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle

artículo científico publicado en 2014

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

scientific article published on 02 August 2019

Author Correction: Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow

artículo científico publicado en 2019

Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3

artículo científico publicado en 2014

Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification ⬇️

artículo científico publicado el 26 de marzo de 2013

Calling known variants and identifying new variants while rapidly aligning sequence data

artículo científico publicado en 2019

Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis

artículo científico publicado en 2015

Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

artículo científico publicado en 2019

Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data

artículo científico publicado en 2013

Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations

artículo científico publicado en 2016

Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits

artículo científico publicado en 2019

Comparative sequence alignment reveals River Buffalo genomic structural differences compared with cattle

scientific article published on 06 March 2018

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm.

artículo científico publicado en 2018

Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo ( Bubalus bubalis )

scientific article published on 07 February 2019

Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor.

artículo científico publicado en 2018

Copy number variation in the cattle genome.

artículo científico

Copy number variation of individual cattle genomes using next-generation sequencing

artículo científico publicado en 2012

Correction to: Analysis of Population-Genetic Properties of Copy Number Variations

artículo científico publicado en 2018

De novo assembly of haplotype-resolved genomes with trio binning

article

Determination of quantitative trait nucleotides by concordance analysis between quantitative trait loci and marker genotypes of US Holsteins

scientific article published on 19 July 2018

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle

artículo científico publicado en 2016

Effect of consuming endophyte-infected fescue seed on transcript abundance in the mammary gland of lactating and dry cows, as assessed by RNA sequencing

artículo científico publicado en 2018

Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology.

artículo científico publicado en 2018

Fine mapping for Weaver syndrome in Brown Swiss cattle and the identification of 41 concordant mutations across NRCAM, PNPLA8 and CTTNBP2

artículo científico publicado en 2013

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

artículo científico publicado en 2007

Genome to Phenome: Improving Animal Health, Production, and Well-Being - A New USDA Blueprint for Animal Genome Research 2018-2027.

artículo científico publicado en 2019

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins.

artículo científico publicado en 2014

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus

artículo científico publicado en 2016

Genomic characteristics of cattle copy number variations.

artículo científico publicado en 2011

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping

artículo científico publicado en 2013

Genomic evaluation of age at first calving.

artículo científico publicado en 2017

Genomic predictions combining SNP markers and copy number variations in Nellore cattle.

artículo científico publicado en 2018

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle.

artículo científico publicado en 2011

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

artículo científico publicado en 2014

Genomic structural differences between cattle and River Buffalo identified through comparative genomic and transcriptomic analysis.

artículo científico publicado en 2018

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

artículo científico publicado en 2020

Host-rumen microbe interactions may be leveraged to improve the productivity of dairy cows.

artículo científico publicado en 2017

Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle

artículo científico publicado en 2013

Identification of candidate transcription factor binding sites in the cattle genome.

artículo científico publicado en 2013

Increasing the number of single nucleotide polymorphisms used in genomic evaluation of dairy cattle.

artículo científico publicado en 2016

Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia

artículo científico publicado en 2009

Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances

scientific article published on 22 August 2018

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

artículo científico publicado en 2009

Population-genetic properties of differentiated copy number variations in cattle.

artículo científico publicado en 2016

RAPTR-SV: a hybrid method for the detection of structural variants

artículo científico publicado en 2015

Random Forests approach for identifying additive and epistatic single nucleotide polymorphisms associated with residual feed intake in dairy cattle.

artículo científico publicado en 2013

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression

artículo científico publicado en 2016

Reducing animal sequencing redundancy by preferentially selecting animals with low-frequency haplotypes.

artículo científico publicado en 2016

Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan

artículo científico publicado en 2016

Scaffolding of long read assemblies using long range contact information

artículo científico publicado en 2017

Selecting sequence variants to improve genomic predictions for dairy cattle

artículo científico publicado en 2017

Short communication: Use of young bulls in the United States

artículo científico publicado en 2014

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

artículo científico publicado en 2017

Statistical Detection of Genome Differences Based on CNV Segments

artículo científico publicado en 2018

Systematic Profiling of Short Tandem Repeats in the Cattle Genome

scientific article published on January 2017

The antibody loci of the domestic goat (Capra hircus).

artículo científico publicado en 2017

The challenges and importance of structural variation detection in livestock

scientific article published on 18 February 2014

The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation

scientific article published on 09 February 2017

Transcriptomes of Frankia sp. strain CcI3 in growth transitions

artículo científico publicado en 2011

Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow

artículo científico publicado en 2019

Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures

artículo científico publicado en 2018

Variants at the ASIP locus contribute to coat color darkening in Nellore cattle

artículo científico publicado en 2021

Lista de obras de Derek M Bickhart

A PLAG1 mutation contributed to stature recovery in modern cattle.

A Reference Genome Assembly of American Bison, Bison bison bison

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus

A genome-wide association study of calf birth weight in Holstein cattle using single nucleotide polymorphisms and phenotypes predicted from auxiliary traits.

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle

A high-resolution whole-genome map of the distinctive epigenomic landscape induced by butyrate in bovine cells

Analysis of Population-Genetic Properties of Copy Number Variations

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

Author Correction: Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow

Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3

Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification ⬇️

Calling known variants and identifying new variants while rapidly aligning sequence data

Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis

Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data

Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations

Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits

Comparative sequence alignment reveals River Buffalo genomic structural differences compared with cattle

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm.

Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo ( Bubalus bubalis )

Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor.

Copy number variation in the cattle genome.

Copy number variation of individual cattle genomes using next-generation sequencing

Correction to: Analysis of Population-Genetic Properties of Copy Number Variations

De novo assembly of haplotype-resolved genomes with trio binning

Determination of quantitative trait nucleotides by concordance analysis between quantitative trait loci and marker genotypes of US Holsteins

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle

Effect of consuming endophyte-infected fescue seed on transcript abundance in the mammary gland of lactating and dry cows, as assessed by RNA sequencing

Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology.

Fine mapping for Weaver syndrome in Brown Swiss cattle and the identification of 41 concordant mutations across NRCAM, PNPLA8 and CTTNBP2

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

Genome to Phenome: Improving Animal Health, Production, and Well-Being - A New USDA Blueprint for Animal Genome Research 2018-2027.

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins.

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus

Genomic characteristics of cattle copy number variations.

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping

Genomic evaluation of age at first calving.

Genomic predictions combining SNP markers and copy number variations in Nellore cattle.

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle.

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

Genomic structural differences between cattle and River Buffalo identified through comparative genomic and transcriptomic analysis.

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

Host-rumen microbe interactions may be leveraged to improve the productivity of dairy cows.

Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle

Identification of candidate transcription factor binding sites in the cattle genome.

Increasing the number of single nucleotide polymorphisms used in genomic evaluation of dairy cattle.

Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia

Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

Population-genetic properties of differentiated copy number variations in cattle.

RAPTR-SV: a hybrid method for the detection of structural variants

Random Forests approach for identifying additive and epistatic single nucleotide polymorphisms associated with residual feed intake in dairy cattle.

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression

Reducing animal sequencing redundancy by preferentially selecting animals with low-frequency haplotypes.

Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan

Scaffolding of long read assemblies using long range contact information

Selecting sequence variants to improve genomic predictions for dairy cattle

Short communication: Use of young bulls in the United States

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

Statistical Detection of Genome Differences Based on CNV Segments

Systematic Profiling of Short Tandem Repeats in the Cattle Genome

The antibody loci of the domestic goat (Capra hircus).

The challenges and importance of structural variation detection in livestock

The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation

Transcriptomes of Frankia sp. strain CcI3 in growth transitions

Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow

Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures

Variants at the ASIP locus contribute to coat color darkening in Nellore cattle