Lista de obras - Johan Elf - Dominio Público Uruguay

An Evaluation of the Faster STORM Method for Super-resolution Microscopy

scholarly article published August 2014

Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging

artículo científico publicado en 2017

Application of Noncanonical Amino Acids for Protein Labeling in a Genomically Recoded Escherichia coli

artículo científico publicado en 2016

Arming the Neighborhood

artículo científico publicado en 2016

Author Correction: tRNA tracking for direct measurements of protein synthesis kinetics in live cells

scientific article published on 01 July 2019

Bistable Bacterial Growth Rate in Response to Antibiotics with Low Membrane Permeability

artículo científico publicado en 2006

Bursting onto the scene? Exploring stochastic mRNA production in bacteria

article

Comparison of repressor and transcriptional attenuator systems for control of amino acid biosynthetic operons

artículo científico publicado en 2001

Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Costs and constraints from time-delayed feedback in small gene regulatory motifs

artículo científico publicado en 2010

DNA surface exploration and operator bypassing during target search

artículo científico publicado en 2020

Delay-induced anomalous fluctuations in intracellular regulation

artículo científico publicado en 2011

Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation

artículo científico publicado en 2014

Extracting intracellular diffusive states and transition rates from single-molecule tracking data

artículo científico publicado en 2013

Fast evaluation of fluctuations in biochemical networks with the linear noise approximation

artículo científico publicado en 2003

High-throughput gene expression analysis at the level of single proteins using a microfluidic turbidostat and automated cell tracking

artículo científico publicado en 2012

Hypothesis: Homologous Recombination Depends on Parallel Search

artículo científico publicado en 2016

In situ genotyping of a pooled strain library after characterizing complex phenotypes.

artículo científico publicado en 2017

Kinetics of dCas9 target search in Escherichia coli

artículo científico publicado en 2017

Lost in presumption: stochastic reactions in spatial models

artículo científico publicado en 2012

MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit

artículo científico publicado en 2012

Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes

artículo científico publicado en 2016

Near-critical behavior of aminoacyl-tRNA pools in E. coli at rate-limiting supply of amino acids

artículo científico publicado en 2004

Near-critical phenomena in intracellular metabolite pools

artículo científico publicado en 2003

Noise-induced Min phenotypes in E. coli

artículo científico publicado en 2006

Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis

artículo científico publicado en 2015

Over expression of a tRNA(Leu) isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading

artículo científico publicado en 2005

Pointwise error estimates in localization microscopy

artículo científico publicado en 2017

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product

artículo científico publicado en 2012

Probing transcription factor dynamics at the single-molecule level in a living cell ⬇️

artículo científico publicado en 2007

RNAs actively cycle on the Sm-like protein Hfq.

artículo científico publicado en 2010

Ribosome bypassing at serine codons as a test of the model of selective transfer RNA charging

artículo científico publicado en 2005

Selective charging of tRNA isoacceptors explains patterns of codon usage

artículo científico publicado en 2003

Selective charging of tRNA isoacceptors induced by amino-acid starvation

artículo científico publicado en 2005

Simulated single molecule microscopy with SMeagol

artículo científico publicado en 2016

Single molecule approaches to transcription factor kinetics in living cells

artículo científico publicado en 2009

Single molecule methods with applications in living cells

artículo científico

Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40 ⬇️

artículo científico publicado el 14 de diciembre de 2011

Single-molecule investigations of the stringent response machinery in living bacterial cells

artículo científico publicado en 2011

Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid

artículo científico publicado en 2014

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases

artículo científico publicado en 2004

Staying Clear of the Dragons

artículo científico publicado en 2016

Stochastic reaction-diffusion kinetics in the microscopic limit

artículo científico publicado en 2010

Stochastic reaction-diffusion processes with embedded lower-dimensional structures

artículo científico publicado en 2013

Stochastic reaction-diffusion simulation with MesoRD.

artículo científico publicado en 2005

Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI.

artículo científico publicado en 2018

Studying transcriptional interactions in single cells at sufficient resolution

artículo científico publicado en 2010

Systems Biology: Nobel Symposium 146.

artículo científico publicado en 2009

Systems biology is taking off.

artículo científico publicado en 2003

The Bacterial Toxin RelE Displays Codon-Specific Cleavage of mRNAs in the Ribosomal A Site

artículo científico publicado en 2003

The Logic of Life

artículo científico publicado en 2003

The Synchronization of Replication and Division Cycles in Individual E. coli Cells

artículo científico publicado en 2016

The lac repressor displays facilitated diffusion in living cells

artículo científico publicado en 2012

Time-resolved imaging-based CRISPRi screening

artículo científico publicado en 2019

Transcription factor binding kinetics constrain noise suppression via negative feedback

artículo científico publicado en 2013

Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models

artículo científico publicado en 2013

Variational Algorithms for Analyzing Noisy Multistate Diffusion Trajectories

artículo científico publicado en 2018

Variational algorithms for analyzing noisy multi-state diffusion trajectories

scholarly article published 8 March 2018

What makes ribosome-mediated transcriptional attenuation sensitive to amino acid limitation?

artículo científico publicado en 2005

What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition?

artículo científico publicado en 2015

tRNA tracking for direct measurements of protein synthesis kinetics in live cells

article by Ivan L Volkov et al published June 2018 in Nature Chemical Biology

Lista de obras de Johan Elf

An Evaluation of the Faster STORM Method for Super-resolution Microscopy

Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging

Application of Noncanonical Amino Acids for Protein Labeling in a Genomically Recoded Escherichia coli

Arming the Neighborhood

Author Correction: tRNA tracking for direct measurements of protein synthesis kinetics in live cells

Bistable Bacterial Growth Rate in Response to Antibiotics with Low Membrane Permeability

Bursting onto the scene? Exploring stochastic mRNA production in bacteria

Comparison of repressor and transcriptional attenuator systems for control of amino acid biosynthetic operons

Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Costs and constraints from time-delayed feedback in small gene regulatory motifs

DNA surface exploration and operator bypassing during target search

Delay-induced anomalous fluctuations in intracellular regulation

Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation

Extracting intracellular diffusive states and transition rates from single-molecule tracking data

Fast evaluation of fluctuations in biochemical networks with the linear noise approximation

High-throughput gene expression analysis at the level of single proteins using a microfluidic turbidostat and automated cell tracking

Hypothesis: Homologous Recombination Depends on Parallel Search

In situ genotyping of a pooled strain library after characterizing complex phenotypes.

Kinetics of dCas9 target search in Escherichia coli

Lost in presumption: stochastic reactions in spatial models

MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit

Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes

Near-critical behavior of aminoacyl-tRNA pools in E. coli at rate-limiting supply of amino acids

Near-critical phenomena in intracellular metabolite pools

Noise-induced Min phenotypes in E. coli

Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis

Over expression of a tRNA(Leu) isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading

Pointwise error estimates in localization microscopy

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product

Probing transcription factor dynamics at the single-molecule level in a living cell ⬇️

RNAs actively cycle on the Sm-like protein Hfq.

Ribosome bypassing at serine codons as a test of the model of selective transfer RNA charging

Selective charging of tRNA isoacceptors explains patterns of codon usage

Selective charging of tRNA isoacceptors induced by amino-acid starvation

Simulated single molecule microscopy with SMeagol

Single molecule approaches to transcription factor kinetics in living cells

Single molecule methods with applications in living cells

Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40 ⬇️

Single-molecule investigations of the stringent response machinery in living bacterial cells

Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases

Staying Clear of the Dragons

Stochastic reaction-diffusion kinetics in the microscopic limit

Stochastic reaction-diffusion processes with embedded lower-dimensional structures

Stochastic reaction-diffusion simulation with MesoRD.

Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI.

Studying transcriptional interactions in single cells at sufficient resolution

Systems Biology: Nobel Symposium 146.

Systems biology is taking off.

The Bacterial Toxin RelE Displays Codon-Specific Cleavage of mRNAs in the Ribosomal A Site

The Logic of Life

The Synchronization of Replication and Division Cycles in Individual E. coli Cells

The lac repressor displays facilitated diffusion in living cells

Time-resolved imaging-based CRISPRi screening

Transcription factor binding kinetics constrain noise suppression via negative feedback

Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models

Variational Algorithms for Analyzing Noisy Multistate Diffusion Trajectories

Variational algorithms for analyzing noisy multi-state diffusion trajectories

What makes ribosome-mediated transcriptional attenuation sensitive to amino acid limitation?

What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition?

tRNA tracking for direct measurements of protein synthesis kinetics in live cells