Lista de obras - Pengyi Yang - Dominio Público Uruguay

A benchmark study of simulation methods for single-cell RNA sequencing data

scientific article published on 25 November 2021

A hierarchical approach to removal of unwanted variation for large-scale metabolomics data

artículo científico publicado en 2021

A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data

artículo científico publicado en 2010

A particle swarm based hybrid system for imbalanced medical data sampling

artículo científico publicado en 2009

An improved Akt reporter reveals intra- and inter-cellular heterogeneity and oscillations in signal transduction.

artículo científico publicado en 2017

An integrative systems genetic analysis of mammalian lipid metabolism

artículo científico publicado en 2019

Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis

scientific article published on 24 December 2019

CNOT3-Dependent mRNA Deadenylation Safeguards the Pluripotent State

artículo científico publicado en 2016

Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm.

artículo científico publicado en 2010

Data Independent Acquisition Proteomic Analysis Can Discriminate between Actinic Keratosis, Bowen's Disease, and Cutaneous Squamous Cell Carcinoma

artículo científico publicado en 2019

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway

artículo científico publicado en 2013

Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal

artículo científico publicado en 2014

Global Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK Substrates.

artículo científico publicado en 2015

Global redox proteome and phosphoproteome analysis reveals redox switch in Akt

scientific article published on 02 December 2019

Hierarchical kernel mixture models for the prediction of AIDS disease progression using HIV structural gp120 profiles.

artículo científico publicado en 2010

Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors.

artículo científico publicado en 2014

Integrated glycoproteomics identifies a role of N-glycosylation and galectin-1 on myogenesis and muscle development

scientific article published on 16 September 2020

Intragenic Enhancers Attenuate Host Gene Expression.

artículo científico publicado en 2017

Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data

artículo científico publicado en 2015

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

scientific article published on 11 July 2019

NoisyGOA: Noisy GO annotations prediction using taxonomic and semantic similarity.

artículo científico

Protocol for the processing and downstream analysis of phosphoproteomic data with PhosR

artículo científico publicado en 2021

QCMAP: An Interactive Web-Tool for Performance Diagnosis and Prediction of LC-MS Systems

artículo científico publicado en 2019

Sample Subset Optimization Techniques for Imbalanced and Ensemble Learning Problems in Bioinformatics Applications

artículo científico publicado en 2013

Temporal ordering of omics and multiomic events inferred from time-series data

scientific article published on 16 July 2020

Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies

artículo científico publicado en 2016

mTORC1 Is a Major Regulatory Node in the FGF21 Signaling Network in Adipocytes.

artículo científico publicado en 2016

scClassify: sample size estimation and multiscale classification of cells using single and multiple reference

scientific article published on 01 June 2020

scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction

artículo científico publicado en 2022

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

artículo científico publicado en 2019

scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model

artículo científico publicado en 2022

scReClassify: post hoc cell type classification of single-cell rNA-seq data

artículo científico publicado en 2019

Lista de obras de Pengyi Yang

A benchmark study of simulation methods for single-cell RNA sequencing data

A hierarchical approach to removal of unwanted variation for large-scale metabolomics data

A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data

A particle swarm based hybrid system for imbalanced medical data sampling

An improved Akt reporter reveals intra- and inter-cellular heterogeneity and oscillations in signal transduction.

An integrative systems genetic analysis of mammalian lipid metabolism

Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis

CNOT3-Dependent mRNA Deadenylation Safeguards the Pluripotent State

Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm.

Data Independent Acquisition Proteomic Analysis Can Discriminate between Actinic Keratosis, Bowen's Disease, and Cutaneous Squamous Cell Carcinoma

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway

Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal

Global Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK Substrates.

Global redox proteome and phosphoproteome analysis reveals redox switch in Akt

Hierarchical kernel mixture models for the prediction of AIDS disease progression using HIV structural gp120 profiles.

Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors.

Integrated glycoproteomics identifies a role of N-glycosylation and galectin-1 on myogenesis and muscle development

Intragenic Enhancers Attenuate Host Gene Expression.

Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

NoisyGOA: Noisy GO annotations prediction using taxonomic and semantic similarity.

Protocol for the processing and downstream analysis of phosphoproteomic data with PhosR

QCMAP: An Interactive Web-Tool for Performance Diagnosis and Prediction of LC-MS Systems

Sample Subset Optimization Techniques for Imbalanced and Ensemble Learning Problems in Bioinformatics Applications

Temporal ordering of omics and multiomic events inferred from time-series data

Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies

mTORC1 Is a Major Regulatory Node in the FGF21 Signaling Network in Adipocytes.

scClassify: sample size estimation and multiscale classification of cells using single and multiple reference

scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction

scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets

scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model

scReClassify: post hoc cell type classification of single-cell rNA-seq data