Lista de obras - Krishna R Kalari - Dominio Público Uruguay

A Transcriptionally Definable Subgroup of Triple-Negative Breast and Ovarian Cancer Samples Shows Sensitivity to HSP90 Inhibition

artículo científico publicado en 2019

A cell cycle-dependent BRCA1-UHRF1 cascade regulates DNA double-strand break repair pathway choice

artículo científico publicado en 2016

A comprehensive analysis of breast cancer microbiota and host gene expression.

artículo científico publicado en 2017

A knowledge-based approach to predict intragenic deletions or duplications

artículo científico publicado en 2008

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

artículo científico publicado en 2011

ATR Inhibition Is a Promising Radiosensitizing Strategy for Triple-Negative Breast Cancer

Acetaminophen-NAPQI Hepatotoxicity: A Cell Line Model System Genome-Wide Association Study ⬇️

artículo científico publicado el 22 de diciembre de 2010

An integrated model of the transcriptome of HER2-positive breast cancer

artículo científico publicado en 2013

Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction Between SLC38A7 and ALPPL2

artículo científico publicado en 2019

Anastrozole has an association between degree of estrogen suppression and outcomes in early breast cancer and is a ligand for estrogen receptor α

artículo científico publicado en 2020

Antitumor activity of Z-endoxifen in aromatase inhibitor-sensitive and aromatase inhibitor-resistant estrogen receptor-positive breast cancer

scientific article published on 19 May 2020

BBBomics-Human Blood Brain Barrier Transcriptomics Hub.

artículo científico

Beta-Poisson model for single-cell RNA-seq data analyses

artículo científico publicado en 2016

Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.

artículo científico publicado en 2018

Betaine-homocysteine methyltransferase: Human liver genotype–phenotype correlation ⬇️

artículo científico publicado el 21 de octubre de 2010

Breast cancer chemoprevention pharmacogenomics: Deep sequencing and functional genomics of the ZNF423 and CTSO genes

artículo científico publicado en 2017

CD38 expression, function, and gene resequencing in a human lymphoblastoid cell line-based model system

artículo científico publicado en 2010

Circular RNAs and their associations with breast cancer subtypes

artículo científico publicado en 2016

Clonal expansion of antitumor T cells in breast cancer correlates with response to neoadjuvant chemotherapy

artículo científico publicado en 2016

Comparison of 99mTc-Sestamibi Molecular Breast Imaging and Breast MRI in Patients With Invasive Breast Cancer Receiving Neoadjuvant Chemotherapy

artículo científico publicado en 2019

Concordance between predicted HLA type using next generation sequencing data generated for non-HLA purposes and clinical HLA type

artículo científico publicado en 2020

Copy number variation and cytidine analogue cytotoxicity: a genome-wide association approach

artículo científico publicado en 2010

Correction: Folate receptor-α (FOLR1) expression and function in triple negative tumors.

artículo científico publicado en 2015

Cytosolic 5'-nucleotidase III (NT5C3): gene sequence variation and functional genomics

artículo científico publicado en 2009

DNA methyltransferase expression in triple-negative breast cancer predicts sensitivity to decitabine

artículo científico publicado en 2018

Deep Sequence Analysis of Non-Small Cell Lung Cancer: Integrated Analysis of Gene Expression, Alternative Splicing, and Single Nucleotide Variations in Lung Adenocarcinomas with and without Oncogenic KRAS Mutations ⬇️

artículo científico publicado el 10 de febrero de 2012

Deep sequencing across germline genome-wide association study signals relating to breast cancer events in women receiving aromatase inhibitors for adjuvant therapy of early breast cancer

scientific article published on 01 October 2019

Detecting gene-gene interactions in prostate disease in African American men

artículo científico publicado en 2011

Detection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer.

artículo científico publicado en 2012

Determining the frequency of pathogenic germline variants from exome sequencing in patients with castrate-resistant prostate cancer.

artículo científico publicado en 2016

Differential Effects of Alzheimer's Disease Aβ40 and 42 on Endocytosis and Intraneuronal Trafficking.

artículo científico publicado en 2018

Discovery of a glucocorticoid receptor (GR) activity signature using selective GR antagonism in ER-negative breast cancer.

artículo científico publicado en 2018

Ecto-5'-nucleotidase and thiopurine cellular circulation: association with cytotoxicity

artículo científico publicado en 2010

Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study

artículo científico publicado en 2017

Estrogen receptor beta repurposes EZH2 to suppress oncogenic NFκB/p65 signaling in triple negative breast cancer

artículo científico publicado en 2022

Estrogen, SNP-Dependent Chemokine Expression and Selective Estrogen Receptor Modulator Regulation

artículo científico publicado en 2016

Estrogens and their precursors in postmenopausal women with early breast cancer receiving anastrozole

artículo científico publicado en 2014

Exome sequencing reveals frequent deleterious germline variants in cancer susceptibility genes in women with invasive breast cancer undergoing neoadjuvant chemotherapy

artículo científico publicado en 2015

Folate receptor alpha expression associates with improved disease-free survival in triple negative breast cancer patients

artículo científico publicado en 2020

Folate receptor-α (FOLR1) expression and function in triple negative tumors

artículo científico publicado en 2015

Gemcitabine metabolic pathway genetic polymorphisms and response in patients with non-small cell lung cancer ⬇️

artículo científico publicado el 1 de febrero de 2012

Gene expression, single nucleotide variant and fusion transcript discovery in archival material from breast tumors

artículo científico publicado en 2013

Genetic Polymorphisms in the Long Noncoding RNA MIR2052HG Offer a Pharmacogenomic Basis for the Response of Breast Cancer Patients to Aromatase Inhibitor Therapy

artículo científico publicado en 2016

Genomic analysis reveals that immune function genes are strongly linked to clinical outcome in the North Central Cancer Treatment Group n9831 Adjuvant Trastuzumab Trial.

artículo científico publicado en 2015

Germline genome-wide association studies in women receiving neoadjuvant chemotherapy with or without bevacizumab

artículo científico publicado en 2018

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

scholarly article by Saurabh Baheti published in July 2018

Human S-adenosylhomocysteine hydrolase: common gene sequence variation and functional genomic characterization

artículo científico publicado en 2009

IM-TORNADO: a tool for comparison of 16S reads from paired-end libraries

artículo científico publicado en 2014

Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs)

artículo científico publicado en 2014

Impact of histopathology, tumor-infiltrating lymphocytes, and adjuvant chemotherapy on prognosis of triple-negative breast cancer

artículo científico publicado en 2017

Implementation of preemptive DNA sequence–based pharmacogenomics testing across a large academic medical center: The Mayo-Baylor RIGHT 10K Study

artículo científico publicado en 2022

Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing

artículo científico publicado en 2011

Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment

artículo científico publicado en 2015

Inverse association between programmed death ligand 1 and genes in the VEGF pathway in primary clear cell renal cell carcinoma

artículo científico publicado en 2013

Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance.

artículo científico

Loss of heterozygosity at the CYP2D6 locus in breast cancer: implications for germline pharmacogenetic studies.

artículo científico publicado en 2014

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing

artículo científico publicado en 2014

MIR2052HG regulates ERα levels and aromatase inhibitor resistance through LMTK3 by recruiting EGR1

Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines

artículo científico publicado en 2016

Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls

artículo científico publicado en 2016

PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient

scientific article published on 01 December 2018

Pharmacogenomics of aromatase inhibitors in postmenopausal breast cancer and additional mechanisms of anastrozole action

scientific article published on 23 July 2020

Protein kinase Cι expression and oncogenic signaling mechanisms in cancer.

artículo científico publicado en 2011

RNA toxicity and missplicing in the common eye disease fuchs endothelial corneal dystrophy.

artículo científico publicado en 2015

SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway

artículo científico publicado en 2017

Single-nucleotide polymorphism biomarkers of adjuvant anastrozole-induced estrogen suppression in early breast cancer

artículo científico publicado en 2020

TCL1A Single-Nucleotide Polymorphisms and Estrogen-Mediated Toll-Like Receptor-MYD88-Dependent Nuclear Factor-κB Activation: Single-Nucleotide Polymorphism- and Selective Estrogen Receptor Modulator-Dependent Modification of Inflammation and Immune

scientific article published on 14 June 2017

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data

artículo científico publicado en 2012

TSPAN5, ERICH3 and selective serotonin reuptake inhibitors in major depressive disorder: pharmacometabolomics-informed pharmacogenomics

artículo científico publicado en 2016

The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease

artículo científico publicado en 2016

The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data

artículo científico publicado en 2014

The lncRNA MIR2052HG regulates ERα levels and aromatase inhibitor resistance through LMTK3 by recruiting EGR1

Transcriptome analysis of garlic-induced hepatoprotection against alcoholic fatty liver

artículo científico publicado en 2012

Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites

artículo científico publicado en 2014

Trinucleotide Repeat Expansion in the Transcription Factor 4 (TCF4) Gene Leads to Widespread mRNA Splicing Changes in Fuchs' Endothelial Corneal Dystrophy

artículo científico publicado en 2017

Tumor Sequencing and Patient-Derived Xenografts in the Neoadjuvant Treatment of Breast Cancer

artículo científico publicado en 2017

Vitamin D Levels, Vitamin D Receptor Polymorphisms, and Inflammatory Cytokines in Aromatase Inhibitor-Induced Arthralgias: An Analysis of CCTG MA.27.

artículo científico publicado en 2017

Lista de obras de Krishna R Kalari

A Transcriptionally Definable Subgroup of Triple-Negative Breast and Ovarian Cancer Samples Shows Sensitivity to HSP90 Inhibition

A cell cycle-dependent BRCA1-UHRF1 cascade regulates DNA double-strand break repair pathway choice

A comprehensive analysis of breast cancer microbiota and host gene expression.

A knowledge-based approach to predict intragenic deletions or duplications

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines

ATR Inhibition Is a Promising Radiosensitizing Strategy for Triple-Negative Breast Cancer

Acetaminophen-NAPQI Hepatotoxicity: A Cell Line Model System Genome-Wide Association Study ⬇️

An integrated model of the transcriptome of HER2-positive breast cancer

Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction Between SLC38A7 and ALPPL2

Anastrozole has an association between degree of estrogen suppression and outcomes in early breast cancer and is a ligand for estrogen receptor α

Antitumor activity of Z-endoxifen in aromatase inhibitor-sensitive and aromatase inhibitor-resistant estrogen receptor-positive breast cancer

BBBomics-Human Blood Brain Barrier Transcriptomics Hub.

Beta-Poisson model for single-cell RNA-seq data analyses

Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.

Betaine-homocysteine methyltransferase: Human liver genotype–phenotype correlation ⬇️

Breast cancer chemoprevention pharmacogenomics: Deep sequencing and functional genomics of the ZNF423 and CTSO genes

CD38 expression, function, and gene resequencing in a human lymphoblastoid cell line-based model system

Circular RNAs and their associations with breast cancer subtypes

Clonal expansion of antitumor T cells in breast cancer correlates with response to neoadjuvant chemotherapy

Comparison of 99mTc-Sestamibi Molecular Breast Imaging and Breast MRI in Patients With Invasive Breast Cancer Receiving Neoadjuvant Chemotherapy

Concordance between predicted HLA type using next generation sequencing data generated for non-HLA purposes and clinical HLA type

Copy number variation and cytidine analogue cytotoxicity: a genome-wide association approach

Correction: Folate receptor-α (FOLR1) expression and function in triple negative tumors.

Cytosolic 5'-nucleotidase III (NT5C3): gene sequence variation and functional genomics

DNA methyltransferase expression in triple-negative breast cancer predicts sensitivity to decitabine

Deep Sequence Analysis of Non-Small Cell Lung Cancer: Integrated Analysis of Gene Expression, Alternative Splicing, and Single Nucleotide Variations in Lung Adenocarcinomas with and without Oncogenic KRAS Mutations ⬇️

Deep sequencing across germline genome-wide association study signals relating to breast cancer events in women receiving aromatase inhibitors for adjuvant therapy of early breast cancer

Detecting gene-gene interactions in prostate disease in African American men

Detection of redundant fusion transcripts as biomarkers or disease-specific therapeutic targets in breast cancer.

Determining the frequency of pathogenic germline variants from exome sequencing in patients with castrate-resistant prostate cancer.

Differential Effects of Alzheimer's Disease Aβ40 and 42 on Endocytosis and Intraneuronal Trafficking.

Discovery of a glucocorticoid receptor (GR) activity signature using selective GR antagonism in ER-negative breast cancer.

Ecto-5'-nucleotidase and thiopurine cellular circulation: association with cytotoxicity

Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study

Estrogen receptor beta repurposes EZH2 to suppress oncogenic NFκB/p65 signaling in triple negative breast cancer

Estrogen, SNP-Dependent Chemokine Expression and Selective Estrogen Receptor Modulator Regulation

Estrogens and their precursors in postmenopausal women with early breast cancer receiving anastrozole

Exome sequencing reveals frequent deleterious germline variants in cancer susceptibility genes in women with invasive breast cancer undergoing neoadjuvant chemotherapy

Folate receptor alpha expression associates with improved disease-free survival in triple negative breast cancer patients

Folate receptor-α (FOLR1) expression and function in triple negative tumors

Gemcitabine metabolic pathway genetic polymorphisms and response in patients with non-small cell lung cancer ⬇️

Gene expression, single nucleotide variant and fusion transcript discovery in archival material from breast tumors

Genetic Polymorphisms in the Long Noncoding RNA MIR2052HG Offer a Pharmacogenomic Basis for the Response of Breast Cancer Patients to Aromatase Inhibitor Therapy

Genomic analysis reveals that immune function genes are strongly linked to clinical outcome in the North Central Cancer Treatment Group n9831 Adjuvant Trastuzumab Trial.

Germline genome-wide association studies in women receiving neoadjuvant chemotherapy with or without bevacizumab

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data

Human S-adenosylhomocysteine hydrolase: common gene sequence variation and functional genomic characterization

IM-TORNADO: a tool for comparison of 16S reads from paired-end libraries

Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs)

Impact of histopathology, tumor-infiltrating lymphocytes, and adjuvant chemotherapy on prognosis of triple-negative breast cancer

Implementation of preemptive DNA sequence–based pharmacogenomics testing across a large academic medical center: The Mayo-Baylor RIGHT 10K Study

Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing

Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment

Inverse association between programmed death ligand 1 and genes in the VEGF pathway in primary clear cell renal cell carcinoma

Knowledge-guided gene prioritization reveals new insights into the mechanisms of chemoresistance.

Loss of heterozygosity at the CYP2D6 locus in breast cancer: implications for germline pharmacogenetic studies.

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing

MIR2052HG regulates ERα levels and aromatase inhibitor resistance through LMTK3 by recruiting EGR1

Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines

Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls

PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient

Pharmacogenomics of aromatase inhibitors in postmenopausal breast cancer and additional mechanisms of anastrozole action

Protein kinase Cι expression and oncogenic signaling mechanisms in cancer.

RNA toxicity and missplicing in the common eye disease fuchs endothelial corneal dystrophy.

SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway

Single-nucleotide polymorphism biomarkers of adjuvant anastrozole-induced estrogen suppression in early breast cancer

TCL1A Single-Nucleotide Polymorphisms and Estrogen-Mediated Toll-Like Receptor-MYD88-Dependent Nuclear Factor-κB Activation: Single-Nucleotide Polymorphism- and Selective Estrogen Receptor Modulator-Dependent Modification of Inflammation and Immune

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data

TSPAN5, ERICH3 and selective serotonin reuptake inhibitors in major depressive disorder: pharmacometabolomics-informed pharmacogenomics

The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease

The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data

The lncRNA MIR2052HG regulates ERα levels and aromatase inhibitor resistance through LMTK3 by recruiting EGR1

Transcriptome analysis of garlic-induced hepatoprotection against alcoholic fatty liver

Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites

Trinucleotide Repeat Expansion in the Transcription Factor 4 (TCF4) Gene Leads to Widespread mRNA Splicing Changes in Fuchs' Endothelial Corneal Dystrophy

Tumor Sequencing and Patient-Derived Xenografts in the Neoadjuvant Treatment of Breast Cancer

Vitamin D Levels, Vitamin D Receptor Polymorphisms, and Inflammatory Cytokines in Aromatase Inhibitor-Induced Arthralgias: An Analysis of CCTG MA.27.