Lista de obras - Paul Kirk - Dominio Público Uruguay

A Bayesian Mixture Modelling Approach For Spatial Proteomics

A Bayesian mixture modelling approach for spatial proteomics

artículo científico publicado en 2018

A Bayesian semi-parametric model for thermal proteome profiling

scientific article published on 29 June 2021

A Bioconductor workflow for the Bayesian analysis of spatial proteomics

artículo científico publicado en 2019

A Comprehensive Evaluation of Nasal and Bronchial Cytokines and Chemokines Following Experimental Rhinovirus Infection in Allergic Asthma: Increased Interferons (IFN-γ and IFN-λ) and Type 2 Inflammation (IL-5 and IL-13)

artículo científico publicado en 2017

A fast and efficient colocalization algorithm for identifying shared genetic risk factors across multiple traits

artículo científico publicado en 2021

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

artículo científico publicado en 2014

A general moment expansion method for stochastic kinetic models.

artículo científico publicado en 2013

A graph theoretical approach to data fusion

artículo científico publicado en 2016

A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection

artículo científico publicado en 2020

A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection

artículo científico publicado en 2020

ABC-SysBio--approximate Bayesian computation in Python with GPU support

artículo científico publicado en 2010

Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm

artículo científico publicado en 2013

Balancing the robustness and predictive performance of biomarkers.

artículo científico publicado en 2013

Bayesian correlated clustering to integrate multiple datasets

artículo científico publicado en 2012

Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements.

artículo científico publicado en 2011

Cellular population dynamics control the robustness of the stem cell niche.

artículo científico publicado en 2015

Derivative processes for modelling metabolic fluxes.

artículo científico publicado en 2014

Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes

artículo científico

Detection of quantitative trait loci from RNA-seq data with or without genotypes using BaseQTL

artículo científico publicado en 2021

Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection.

artículo científico publicado en 2012

Fast approximate inference for variable selection in Dirichlet process mixtures, with an application to pan-cancer proteomics

scientific article published on 12 December 2019

GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution

scientific article published on 01 March 2020

Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data

artículo científico publicado en 2009

Genetic feature engineering enables characterisation of shared risk factors in immune-mediated diseases

artículo científico publicado en 2020

Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE

artículo científico publicado en 2021

Inferring extrinsic noise from single-cell gene expression data using approximate Bayesian computation

artículo científico publicado en 2016

MDI-GPU: accelerating integrative modelling for genomic-scale data using GP-GPU computing.

artículo científico publicado en 2016

MEANS: python package for Moment Expansion Approximation, iNference and Simulation.

artículo científico publicado en 2016

MR-Clust: Clustering of genetic variants in Mendelian randomization with similar causal estimates

scientific article published on 11 September 2020

Model selection in systems and synthetic biology

artículo científico

Model selection in systems biology depends on experimental design

artículo científico publicado en 2014

Multiple kernel learning for integrative consensus clustering of 'omic datasets

artículo científico publicado en 2020

Multivariate moment closure techniques for stochastic kinetic models.

artículo científico publicado en 2015

Noise-augmented directional clustering of genetic association data identifies distinct mechanisms underlying obesity

artículo científico publicado en 2022

P38 and JNK have opposing effects on persistence of in vivo leukocyte migration in zebrafish.

artículo científico publicado en 2012

Parameter inference for biochemical systems that undergo a Hopf bifurcation

artículo científico publicado en 2008

Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB.

artículo científico publicado en 2015

Plasma proteome analysis in HTLV-1-associated myelopathy/tropical spastic paraparesis.

artículo científico publicado en 2011

Retroviruses integrate into a shared, non-palindromic DNA motif.

artículo científico publicado en 2016

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling.

artículo científico publicado en 2016

SYSBIONS: nested sampling for systems biology

artículo científico publicado en 2014

SYSTEMS BIOLOGY. Systems biology (un)certainties.

artículo científico publicado en 2015

The RNA landscape of the human placenta in health and disease

artículo científico publicado en 2021

Topological sensitivity analysis for systems biology

artículo científico publicado en 2014

Transcriptional, epigenetic and metabolic signatures in cardiometabolic syndrome defined by extreme phenotypes

artículo científico publicado en 2022

Lista de obras de Paul Kirk

A Bayesian Mixture Modelling Approach For Spatial Proteomics

A Bayesian mixture modelling approach for spatial proteomics

A Bayesian semi-parametric model for thermal proteome profiling

A Bioconductor workflow for the Bayesian analysis of spatial proteomics

A Comprehensive Evaluation of Nasal and Bronchial Cytokines and Chemokines Following Experimental Rhinovirus Infection in Allergic Asthma: Increased Interferons (IFN-γ and IFN-λ) and Type 2 Inflammation (IL-5 and IL-13)

A fast and efficient colocalization algorithm for identifying shared genetic risk factors across multiple traits

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

A general moment expansion method for stochastic kinetic models.

A graph theoretical approach to data fusion

A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection

A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection

ABC-SysBio--approximate Bayesian computation in Python with GPU support

Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm

Balancing the robustness and predictive performance of biomarkers.

Bayesian correlated clustering to integrate multiple datasets

Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements.

Cellular population dynamics control the robustness of the stem cell niche.

Derivative processes for modelling metabolic fluxes.

Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes

Detection of quantitative trait loci from RNA-seq data with or without genotypes using BaseQTL

Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection.

Fast approximate inference for variable selection in Dirichlet process mixtures, with an application to pan-cancer proteomics

GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution

Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data

Genetic feature engineering enables characterisation of shared risk factors in immune-mediated diseases

Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE

Inferring extrinsic noise from single-cell gene expression data using approximate Bayesian computation

MDI-GPU: accelerating integrative modelling for genomic-scale data using GP-GPU computing.

MEANS: python package for Moment Expansion Approximation, iNference and Simulation.

MR-Clust: Clustering of genetic variants in Mendelian randomization with similar causal estimates

Model selection in systems and synthetic biology

Model selection in systems biology depends on experimental design

Multiple kernel learning for integrative consensus clustering of 'omic datasets

Multivariate moment closure techniques for stochastic kinetic models.

Noise-augmented directional clustering of genetic association data identifies distinct mechanisms underlying obesity

P38 and JNK have opposing effects on persistence of in vivo leukocyte migration in zebrafish.

Parameter inference for biochemical systems that undergo a Hopf bifurcation

Phosphorelay of non-orthodox two component systems functions through a bi-molecular mechanism in vivo: the case of ArcB.

Plasma proteome analysis in HTLV-1-associated myelopathy/tropical spastic paraparesis.

Retroviruses integrate into a shared, non-palindromic DNA motif.

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling.

SYSBIONS: nested sampling for systems biology

SYSTEMS BIOLOGY. Systems biology (un)certainties.

The RNA landscape of the human placenta in health and disease

Topological sensitivity analysis for systems biology

Transcriptional, epigenetic and metabolic signatures in cardiometabolic syndrome defined by extreme phenotypes