Lista de obras - Lucy R Forrest - Dominio Público Uruguay

A model-structure of a periplasm-facing state of the NhaA antiporter suggests the molecular underpinnings of pH-induced conformational changes

artículo científico publicado en 2012

A structural model of the human serotonin transporter in an outward-occluded state

artículo científico publicado en 2019

A study of the evolution of inverted-topology repeats from LeuT-fold transporters using AlignMe.

artículo científico publicado en 2010

AlignMe--a membrane protein sequence alignment web server

artículo científico publicado en 2014

Alignment of helical membrane protein sequences using AlignMe

artículo científico publicado en 2013

An Extra Amino Acid Residue in Transmembrane Domain 10 of the γ-Aminobutyric Acid (GABA) Transporter GAT-1 Is Required for Efficient Ion-coupled Transport.

artículo científico publicado en 2017

Assignment of the resting state of the secondary active transporter BetP by integrating spectroscopic measurements and molecular simulations

Asymmetry of inverted-topology repeats in the AE1 anion exchanger suggests an elevator-like mechanism.

artículo científico publicado en 2017

Cation Interactions and Membrane Potential Induce Conformational Changes in NaPi-IIb

artículo científico publicado en 2016

Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer.

artículo científico publicado en 2017

Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations.

artículo científico publicado en 2004

Cysteine scanning mutagenesis of transmembrane helix 3 of a brain glutamate transporter reveals two conformationally sensitive positions

artículo científico publicado en 2012

Discrimination of native loop conformations in membrane proteins: decoy library design and evaluation of effective energy scoring functions.

artículo científico publicado en 2003

Emulating proton-induced conformational changes in the vesicular monoamine transporter VMAT2 by mutagenesis

artículo científico publicado en 2016

EncoMPASS: an online database for analyzing structure and symmetry in membrane proteins

artículo científico publicado en 2019

Family resemblances: A common fold for some dimeric ion-coupled secondary transporters

artículo científico publicado en 2015

Functionally important carboxyls in a bacterial homologue of the vesicular monoamine transporter (VMAT).

artículo científico publicado en 2014

GRIFFIN: A versatile methodology for optimization of protein-lipid interfaces for membrane protein simulations.

artículo científico

Gating topology of the proton-coupled oligopeptide symporters

artículo científico publicado en 2015

Global alignment and assessment of TRP channel transmembrane domain structures to explore functional mechanisms

artículo científico publicado en 2020

Helical packing patterns in membrane and soluble proteins.

artículo científico publicado en 2004

Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel

artículo científico publicado en 2000

Hydrogen-bonding and packing features of membrane proteins: functional implications

artículo científico publicado en 2007

Identification of a chloride ion binding site in Na+/Cl -dependent transporters.

artículo científico publicado en 2007

Identification of molecular hinge points mediating alternating access in the vesicular monoamine transporter VMAT2 ⬇️

artículo científico publicado el 25 de marzo de 2013

Identification of the first sodium binding site of the phosphate cotransporter NaPi-IIa (SLC34A1)

artículo científico publicado en 2015

Interpretation of spectroscopic data using molecular simulations for the secondary active transporter BetP

artículo científico publicado en 2019

Interpreting hydrogen-deuterium exchange experiments with molecular simulations: Tutorials and applications of the HDXer ensemble reweighting software [Article v1.0]

artículo científico publicado en 2022

Intestinal serotonin and fluoxetine exposure modulate bacterial colonization in the gut

artículo científico publicado en 2019

Investigation of the sodium-binding sites in the sodium-coupled betaine transporter BetP.

artículo científico publicado en 2012

Inward-facing conformation of glutamate transporters as revealed by their inverted-topology structural repeats.

artículo científico publicado en 2009

Large-scale state-dependent membrane remodeling by a transporter protein

artículo científico publicado en 2019

Loop modeling: Sampling, filtering, and scoring

artículo científico publicado en 2008

Mechanism of Paroxetine (Paxil) Inhibition of the Serotonin Transporter.

artículo científico publicado en 2016

Membrane protein prediction methods

artículo científico publicado en 2007

Membrane simulations: bigger and better?

artículo científico publicado en 2000

Methionine Uptake inCorynebacterium glutamicumby MetQNI and by MetPS, a Novel Methionine and Alanine Importer of the NSS Neurotransmitter Transporter Family†

artículo científico publicado en 2008

Modeling and simulation of ion-coupled and ATP-driven membrane proteins ⬇️

artículo científico publicado el 16 de febrero de 2011

Molecular Determinants of Substrate Specificity in Sodium-coupled Glutamate Transporters.

artículo científico publicado en 2015

Molecular contacts in the transmembrane c-subunit oligomer of F-ATPases identified by tryptophan substitution mutagenesis

artículo científico publicado en 2000

Molecular dynamics simulation of dark-adapted rhodopsin in an explicit membrane bilayer: coupling between local retinal and larger scale conformational change.

artículo científico publicado en 2003

Molecular dynamics simulations of membranes with embedded proteins and peptides: porin, alamethicin and influenza virus M2 ⬇️

artículo científico publicado el 1 de agosto de 1998

On the Role of a Conserved Methionine in the Na<sup>+</sup>-Coupling Mechanism of a Neurotransmitter Transporter Homolog

artículo científico publicado en 2021

On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins

artículo científico publicado en 2006

Repeat-swap homology modeling of secondary active transporters: updated protocol and prediction of elevator-type mechanisms

artículo científico publicado en 2015

Role of N-glycosylation in renal betaine transport.

artículo científico publicado en 2015

Simulations of the M2 channel for influenza A virus.

artículo científico publicado en 1998

Structural Asymmetry in a Trimeric Na+/Betaine Symporter, BetP, from Corynebacterium glutamicum

Structural Symmetry in Membrane Proteins.

artículo científico publicado en 2015

Structural biology. (Pseudo-)symmetrical transport

artículo científico publicado en 2013

Structural elements required for coupling ion and substrate transport in the neurotransmitter transporter homolog LeuT

artículo científico publicado en 2018

Structural fold and binding sites of the human Na⁺-phosphate cotransporter NaPi-II

scientific article published on March 2014

Structural models of the NaPi-II sodium-phosphate cotransporters

artículo científico publicado en 2018

Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategy

artículo científico publicado en 2015

Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategy.

artículo científico publicado en 2016

Structure and regulatory interactions of the cytoplasmic terminal domains of serotonin transporter.

artículo científico publicado en 2014

The alternating-access mechanism of MFS transporters arises from inverted-topology repeats.

artículo científico publicado en 2011

The bacterial dicarboxylate transporter VcINDY uses a two-domain elevator-type mechanism.

artículo científico publicado en 2016

The ins and outs of vesicular monoamine transporters

artículo científico publicado en 2018

The rocking bundle: a mechanism for ion-coupled solute flux by symmetrical transporters.

artículo científico publicado en 2009

The role of trimerization in the osmoregulated betaine transporter BetP

scientific journal article

The structural basis of secondary active transport mechanisms.

artículo científico publicado en 2010

The structure of the HIV-1 Vpu ion channel: modelling and simulation studies.

artículo científico publicado en 2001

Threonine 67 is a key component in the coupling of the NSS amino acid transporter KAAT1.

artículo científico publicado en 2018

Transmembrane Peptide NB of Influenza B: A Simulation, Structure, and Conductance Study†

artículo científico publicado en 2000

Transmembrane domains of viral ion channel proteins: A molecular dynamics simulation study

artículo científico publicado en 2000

Two Na+ Sites Control Conformational Change in a Neurotransmitter Transporter Homolog

artículo científico publicado en 2015

Two models of the influenza A M2 channel domain: verification by comparison

artículo científico publicado en 1998

Lista de obras de Lucy R Forrest

A model-structure of a periplasm-facing state of the NhaA antiporter suggests the molecular underpinnings of pH-induced conformational changes

A structural model of the human serotonin transporter in an outward-occluded state

A study of the evolution of inverted-topology repeats from LeuT-fold transporters using AlignMe.

AlignMe--a membrane protein sequence alignment web server

Alignment of helical membrane protein sequences using AlignMe

An Extra Amino Acid Residue in Transmembrane Domain 10 of the γ-Aminobutyric Acid (GABA) Transporter GAT-1 Is Required for Efficient Ion-coupled Transport.

Assignment of the resting state of the secondary active transporter BetP by integrating spectroscopic measurements and molecular simulations

Asymmetry of inverted-topology repeats in the AE1 anion exchanger suggests an elevator-like mechanism.

Cation Interactions and Membrane Potential Induce Conformational Changes in NaPi-IIb

Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer.

Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations.

Cysteine scanning mutagenesis of transmembrane helix 3 of a brain glutamate transporter reveals two conformationally sensitive positions

Discrimination of native loop conformations in membrane proteins: decoy library design and evaluation of effective energy scoring functions.

Emulating proton-induced conformational changes in the vesicular monoamine transporter VMAT2 by mutagenesis

EncoMPASS: an online database for analyzing structure and symmetry in membrane proteins

Family resemblances: A common fold for some dimeric ion-coupled secondary transporters

Functionally important carboxyls in a bacterial homologue of the vesicular monoamine transporter (VMAT).

GRIFFIN: A versatile methodology for optimization of protein-lipid interfaces for membrane protein simulations.

Gating topology of the proton-coupled oligopeptide symporters

Global alignment and assessment of TRP channel transmembrane domain structures to explore functional mechanisms

Helical packing patterns in membrane and soluble proteins.

Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel

Hydrogen-bonding and packing features of membrane proteins: functional implications

Identification of a chloride ion binding site in Na+/Cl -dependent transporters.

Identification of molecular hinge points mediating alternating access in the vesicular monoamine transporter VMAT2 ⬇️

Identification of the first sodium binding site of the phosphate cotransporter NaPi-IIa (SLC34A1)

Interpretation of spectroscopic data using molecular simulations for the secondary active transporter BetP

Interpreting hydrogen-deuterium exchange experiments with molecular simulations: Tutorials and applications of the HDXer ensemble reweighting software [Article v1.0]

Intestinal serotonin and fluoxetine exposure modulate bacterial colonization in the gut

Investigation of the sodium-binding sites in the sodium-coupled betaine transporter BetP.

Inward-facing conformation of glutamate transporters as revealed by their inverted-topology structural repeats.

Large-scale state-dependent membrane remodeling by a transporter protein

Loop modeling: Sampling, filtering, and scoring

Mechanism of Paroxetine (Paxil) Inhibition of the Serotonin Transporter.

Membrane protein prediction methods

Membrane simulations: bigger and better?

Methionine Uptake inCorynebacterium glutamicumby MetQNI and by MetPS, a Novel Methionine and Alanine Importer of the NSS Neurotransmitter Transporter Family†

Modeling and simulation of ion-coupled and ATP-driven membrane proteins ⬇️

Molecular Determinants of Substrate Specificity in Sodium-coupled Glutamate Transporters.

Molecular contacts in the transmembrane c-subunit oligomer of F-ATPases identified by tryptophan substitution mutagenesis

Molecular dynamics simulation of dark-adapted rhodopsin in an explicit membrane bilayer: coupling between local retinal and larger scale conformational change.

Molecular dynamics simulations of membranes with embedded proteins and peptides: porin, alamethicin and influenza virus M2 ⬇️

On the Role of a Conserved Methionine in the Na<sup>+</sup>-Coupling Mechanism of a Neurotransmitter Transporter Homolog

On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins

Repeat-swap homology modeling of secondary active transporters: updated protocol and prediction of elevator-type mechanisms

Role of N-glycosylation in renal betaine transport.

Simulations of the M2 channel for influenza A virus.

Structural Asymmetry in a Trimeric Na+/Betaine Symporter, BetP, from Corynebacterium glutamicum

Structural Symmetry in Membrane Proteins.

Structural biology. (Pseudo-)symmetrical transport

Structural elements required for coupling ion and substrate transport in the neurotransmitter transporter homolog LeuT

Structural fold and binding sites of the human Na⁺-phosphate cotransporter NaPi-II

Structural models of the NaPi-II sodium-phosphate cotransporters

Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategy

Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategy.

Structure and regulatory interactions of the cytoplasmic terminal domains of serotonin transporter.

The alternating-access mechanism of MFS transporters arises from inverted-topology repeats.

The bacterial dicarboxylate transporter VcINDY uses a two-domain elevator-type mechanism.

The ins and outs of vesicular monoamine transporters

The rocking bundle: a mechanism for ion-coupled solute flux by symmetrical transporters.

The role of trimerization in the osmoregulated betaine transporter BetP

The structural basis of secondary active transport mechanisms.

The structure of the HIV-1 Vpu ion channel: modelling and simulation studies.

Threonine 67 is a key component in the coupling of the NSS amino acid transporter KAAT1.

Transmembrane Peptide NB of Influenza B: A Simulation, Structure, and Conductance Study†

Transmembrane domains of viral ion channel proteins: A molecular dynamics simulation study

Two Na+ Sites Control Conformational Change in a Neurotransmitter Transporter Homolog

Two models of the influenza A M2 channel domain: verification by comparison