Lista de obras - Ruth Timme - Dominio Público Uruguay

A Schema for Digitized Surface Swab Site Metadata in Open-Source DNA Sequence Databases

artículo científico publicado en 2023

Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States

artículo científico publicado en 2017

Broad Phylogenomic Sampling and the Sister Lineage of Land Plants ⬇️

artículo científico publicado el 13 de enero de 2012

Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by whole-genome sequence analysis.

artículo científico publicado en 2015

Closed Genome Sequences of 28 Foodborne Pathogens from the CFSAN Verification Set, Determined by a Combination of Long and Short Reads

artículo científico publicado en 2020

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast

artículo científico publicado en 2013

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast

scientific article published on 03 April 2014

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

artículo científico publicado en 2021

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Give, Isolated from an Imported Chili Powder Product

artículo científico publicado en 2015

Draft Genome Sequence of a Clostridium botulinum Isolate from Water Used for Cooling at a Plant Producing Low-Acid Canned Foods

artículo científico publicado en 2013

Draft Genome Sequences of Clinical Vibrio parahaemolyticus Strains Isolated in Maryland (2010 to 2013)

artículo científico publicado en 2014

Draft genome sequences of 21 Salmonella enterica serovar enteritidis strains

artículo científico publicado en 2012

Draft genome sequences of eight Salmonella enterica serotype newport strains from diverse hosts and locations

artículo científico publicado en 2012

Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

artículo científico publicado en 2012

First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak

artículo científico publicado en 2014

Food Safety Genomics and Connections to One Health and the Clinical Microbiology Laboratory

artículo científico publicado en 2020

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992.

artículo científico publicado en 2014

Fully assembled genome sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

artículo científico publicado en 2013

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

artículo científico publicado en 2022

Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

artículo científico publicado en 2020

Genetic Diversity of Salmonella and Listeria Isolates from Food Facilities

artículo científico publicado en 2018

Genome Sequences of Multidrug-Resistant, Colistin-Susceptible and -Resistant Klebsiella pneumoniae Clinical Isolates from Pakistan

artículo científico publicado en 2016

Genome Sequences of Salmonella enterica Serovar Heidelberg Isolates Isolated in the United States from a Multistate Outbreak of Human Salmonella Infections

artículo científico publicado en 2013

Genome Sequences of Two Emerging Non-O157 Shiga Toxin-Producing Escherichia coli Strains

artículo científico publicado en 2013

Genomics of foodborne pathogens for microbial food safety

artículo científico publicado en 2017

High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer.

artículo científico publicado en 2007

Identification of Brucella genus and eight Brucella species by Luminex bead-based suspension array.

artículo científico publicado en 2017

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation

artículo científico publicado en 2016

Listeria monocytogenes in Stone Fruits Linked to a Multistate Outbreak: Enumeration of Cells and Whole-Genome Sequencing

artículo científico publicado en 2016

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

artículo científico publicado en 2021

Multi-laboratory evaluation of the Illumina iSeq platform for whole genome sequencing of Salmonella, Escherichia coli and Listeria

artículo científico publicado en 2022

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

artículo científico publicado en 2010

On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004.

artículo científico publicado en 2013

Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens

artículo científico publicado en 2020

Origin of strigolactones in the green lineage.

artículo científico publicado en 2012

PHYLOGENY OF FOUR DINOPHYSIACEAN GENERA (DINOPHYCEAE, DINOPHYSIALES) BASED ON rDNA SEQUENCES FROM SINGLE CELLS AND ENVIRONMENTAL SAMPLES(1).

artículo científico publicado en 2009

Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing

artículo científico publicado en 2012

Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus from North America Inferred from Whole Genome Sequence Data

artículo científico publicado en 2020

Phylogenetic networks: modeling, reconstructibility, and accuracy

artículo científico publicado en 2004

Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance

artículo científico publicado en 2019

Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database

artículo científico publicado en 2016

Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements

scientific article published on 27 November 2018

Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad

artículo científico publicado en 2017

The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes

artículo científico publicado en 2017

Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes

artículo científico publicado en 2010

Unraveling the evolution of auxin signaling

artículo científico publicado en 2010

Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes.

artículo científico publicado en 2004

Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.

artículo científico publicado en 2017

Whole genome sequencing uses for foodborne contamination and compliance: Discovery of an emerging contamination event in an ice cream facility using whole genome sequencing

artículo científico publicado en 2019

Whole-genome single-nucleotide-polymorphism analysis for discrimination of Clostridium botulinum group I strains.

artículo científico publicado en 2014

Lista de obras de Ruth Timme

A Schema for Digitized Surface Swab Site Metadata in Open-Source DNA Sequence Databases

Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States

Broad Phylogenomic Sampling and the Sister Lineage of Land Plants ⬇️

Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by whole-genome sequence analysis.

Closed Genome Sequences of 28 Foodborne Pathogens from the CFSAN Verification Set, Determined by a Combination of Long and Short Reads

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Give, Isolated from an Imported Chili Powder Product

Draft Genome Sequence of a Clostridium botulinum Isolate from Water Used for Cooling at a Plant Producing Low-Acid Canned Foods

Draft Genome Sequences of Clinical Vibrio parahaemolyticus Strains Isolated in Maryland (2010 to 2013)

Draft genome sequences of 21 Salmonella enterica serovar enteritidis strains

Draft genome sequences of eight Salmonella enterica serotype newport strains from diverse hosts and locations

Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak

Food Safety Genomics and Connections to One Health and the Clinical Microbiology Laboratory

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992.

Fully assembled genome sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

Genetic Diversity of Salmonella and Listeria Isolates from Food Facilities

Genome Sequences of Multidrug-Resistant, Colistin-Susceptible and -Resistant Klebsiella pneumoniae Clinical Isolates from Pakistan

Genome Sequences of Salmonella enterica Serovar Heidelberg Isolates Isolated in the United States from a Multistate Outbreak of Human Salmonella Infections

Genome Sequences of Two Emerging Non-O157 Shiga Toxin-Producing Escherichia coli Strains

Genomics of foodborne pathogens for microbial food safety

High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer.

Identification of Brucella genus and eight Brucella species by Luminex bead-based suspension array.

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation

Listeria monocytogenes in Stone Fruits Linked to a Multistate Outbreak: Enumeration of Cells and Whole-Genome Sequencing

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

Multi-laboratory evaluation of the Illumina iSeq platform for whole genome sequencing of Salmonella, Escherichia coli and Listeria

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004.

Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens

Origin of strigolactones in the green lineage.

PHYLOGENY OF FOUR DINOPHYSIACEAN GENERA (DINOPHYCEAE, DINOPHYSIALES) BASED ON rDNA SEQUENCES FROM SINGLE CELLS AND ENVIRONMENTAL SAMPLES(1).

Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing

Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus from North America Inferred from Whole Genome Sequence Data

Phylogenetic networks: modeling, reconstructibility, and accuracy

Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance

Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database

Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements

Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad

The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes

Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes

Unraveling the evolution of auxin signaling

Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes.

Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.

Whole genome sequencing uses for foodborne contamination and compliance: Discovery of an emerging contamination event in an ice cream facility using whole genome sequencing

Whole-genome single-nucleotide-polymorphism analysis for discrimination of Clostridium botulinum group I strains.