Lista de obras - Andreas Dräger - Dominio Público Uruguay

A Padawan Programmer's Guide to Developing Software Libraries

artículo científico publicado en 2017

Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

scientific article published on 17 July 2020

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree

artículo científico publicado en 2020

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

artículo científico publicado en 2016

BowTieBuilder: modeling signal transduction pathways

artículo científico publicado en 2009

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

artículo científico publicado en 2020

Community standards to facilitate development and address challenges in metabolic modeling

artículo científico publicado en 2020

Computational Model Informs Effective Control Interventions against <i>Y. enterocolitica</i> Co-Infection

artículo científico publicado en 2020

Controlled vocabularies and semantics in systems biology

artículo científico publicado en 2011

Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling

artículo científico publicado en 2016

Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus

artículo científico publicado en 2021

CySBML: a Cytoscape plugin for SBML ⬇️

artículo científico publicado el 5 de julio de 2012

Do genome-scale models need exact solvers or clearer standards?

artículo científico publicado en 2015

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

artículo científico publicado en 2015

FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2

scientific article published on 01 December 2020

GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML.

artículo científico publicado en 2013

Harmonizing semantic annotations for computational models in biology

artículo científico publicado en 2019

Improving collaboration by standardization efforts in systems biology.

artículo científico publicado en 2014

Insights into Dynamic Network States Using Metabolomic Data

artículo científico publicado en 2019

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

artículo científico publicado en 2015

JSBML: a flexible Java library for working with SBML.

artículo científico publicado en 2011

JSBML: a flexible and entirely Java-based library for working with SBML

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats

artículo científico publicado en 2011

Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19

scientific article published on 26 November 2020

MEMOTE for standardized genome-scale metabolic model testing

artículo científico publicado en 2020

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies

artículo científico publicado en 2009

New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells

artículo científico publicado en 2023

Parkinson's disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein.

artículo científico publicado en 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps

artículo científico publicado en 2013

Precise generation of systems biology models from KEGG pathways

artículo científico publicado en 2013

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

artículo científico publicado en 2020

Qualitative translation of relations from BioPAX to SBML qual

artículo científico publicado en 2012

Recon3D enables a three-dimensional view of gene variation in human metabolism.

artículo científico publicado en 2018

SBML Level 3: an extensible format for the exchange and reuse of biological models

artículo científico publicado en 2020

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

artículo científico publicado en 2013

SBML2L(A)T(E)X: conversion of SBML files into human-readable reports

artículo científico publicado en 2009

SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology

artículo científico publicado en 2014

SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks

artículo científico publicado en 2015

SBOannotator: a Python tool for the automated assignment of systems biology ontology terms

artículo científico publicado en 2023

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655

artículo científico publicado en 2018

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.

scientific article published on 13 June 2019

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

artículo científico publicado en 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.

artículo científico publicado en 2015

Systems biology graphical notation markup language (SBGNML) version 0.3.

scientific article published on 22 June 2020

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2

artículo científico publicado en 2020

TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors

artículo científico publicado en 2013

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes

artículo científico publicado en 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

artículo científico publicado en 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

artículo científico publicado en 2018

The systems biology simulation core algorithm

artículo científico publicado en 2013

Visualizing metabolic network dynamics through time-series metabolomic data

artículo científico publicado en 2020

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis

artículo científico publicado en 2016

Lista de obras de Andreas Dräger

A Padawan Programmer's Guide to Developing Software Libraries

Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

BowTieBuilder: modeling signal transduction pathways

COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Community standards to facilitate development and address challenges in metabolic modeling

Computational Model Informs Effective Control Interventions against <i>Y. enterocolitica</i> Co-Infection

Controlled vocabularies and semantics in systems biology

Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling

Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus

CySBML: a Cytoscape plugin for SBML ⬇️

Do genome-scale models need exact solvers or clearer standards?

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

FBA reveals guanylate kinase as a potential target for antiviral therapies against SARS-CoV-2

GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML.

Harmonizing semantic annotations for computational models in biology

Harmonizing semantic annotations for computational models in biology

Improving collaboration by standardization efforts in systems biology.

Insights into Dynamic Network States Using Metabolomic Data

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

JSBML: a flexible Java library for working with SBML.

JSBML: a flexible and entirely Java-based library for working with SBML

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats

Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19

MEMOTE for standardized genome-scale metabolic model testing

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies

New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells

Parkinson's disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein.

Path2Models: large-scale generation of computational models from biochemical pathway maps

Precise generation of systems biology models from KEGG pathways

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

Qualitative translation of relations from BioPAX to SBML qual

Recon3D enables a three-dimensional view of gene variation in human metabolism.

SBML Level 3: an extensible format for the exchange and reuse of biological models

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

SBML2L(A)T(E)X: conversion of SBML files into human-readable reports

SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology

SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks

SBOannotator: a Python tool for the automated assignment of systems biology ontology terms

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.

Systems biology graphical notation markup language (SBGNML) version 0.3.

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2

TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.

The systems biology simulation core algorithm

Visualizing metabolic network dynamics through time-series metabolomic data

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis