Lista de obras - Johan Malmström - Dominio Público Uruguay

2DDB - a bioinformatics solution for analysis of quantitative proteomics data

artículo científico publicado en 2006

A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

artículo científico

A comprehensive analysis of the Streptococcus pyogenes and human plasma protein interaction network

artículo científico publicado en 2014

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

artículo científico publicado en 2011

A high-quality catalog of the Drosophila melanogaster proteome

artículo científico publicado en 2007

A novel role for pro-coagulant microvesicles in the early host defense against streptococcus pyogenes.

artículo científico publicado en 2013

A quantitative Streptococcus pyogenes-human protein-protein interaction map reveals localization of opsonizing antibodies.

artículo científico publicado en 2019

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

artículo científico publicado en 2011

Activation of platelet-derived growth factor pathway in human asthmatic pulmonary-derived mesenchymal cells

artículo científico publicado en 2003

Advances in proteomic workflows for systems biology

artículo científico publicado en 2007

Analysis of Bacterial Surface Interactions with Mass Spectrometry-Based Proteomics

artículo científico publicado en 2017

Antibody orientation at bacterial surfaces is related to invasive infection.

artículo científico publicado en 2012

Antiproliferative Heparan Sulfate Inhibiting Hyaluronan and Transforming Growth Factor-β Expression in Human Lung Fibroblast Cells: A Possible Antifibrotic Therapy?

Automated quality control system for LC-SRM setups

artículo científico publicado en 2013

Automated selected reaction monitoring software for accurate label-free protein quantification

artículo científico publicado en 2012

Automated workflow for large-scale selected reaction monitoring experiments

artículo científico publicado en 2012

Biglycan isoforms with differences in polysaccharide substitution and core protein in human lung fibroblasts

artículo científico publicado en 2002

Biosynthesis of dermatan sulfate: chondroitin-glucuronate C5-epimerase is identical to SART2

artículo científico publicado en 2006

Cancer associated proteins in blood plasma: Determining normal variation

artículo científico publicado en 2016

Characterization of Released Polypeptides During an Interferon-γ-Dependent Antibacterial Response in Airway Epithelial Cells ⬇️

artículo científico publicado el 21 de agosto de 2012

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

artículo científico publicado en 2009

Complement Activation Occurs at the Surface of Platelets Activated by Streptococcal M1 Protein and This Results in Phagocytosis of Platelets

scientific article published on 12 December 2018

Complete Removal of Extracellular IgG Antibodies in a Randomized Dose-Escalation Phase I Study with the Bacterial Enzyme IdeS--A Novel Therapeutic Opportunity

artículo científico publicado en 2015

Comprehensive Mass Spectrometric Survey of Streptococcus pyogenes Subcellular Proteomes

artículo científico publicado en 2017

Comprehensive Proteomic Characterization of Ontogenic Changes in Hematopoietic Stem and Progenitor Cells.

artículo científico publicado en 2017

DIANA--algorithmic improvements for analysis of data-independent acquisition MS data

artículo científico publicado en 2014

Data processing has major impact on the outcome of quantitative label-free LC-MS analysis

artículo científico publicado en 2014

Data processing methods and quality control strategies for label-free LC-MS protein quantification

artículo científico publicado en 2013

Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins

artículo científico publicado en 2015

Different fractions of human serum glycoproteins bind galectin-1 or galectin-8, and their ratio may provide a refined biomarker for pathophysiological conditions in cancer and inflammatory disease

scientific article published on 17 January 2012

Differential compartmentalization of Streptococcus pyogenes virulence factors and host protein binding properties as a mechanism for host adaptation.

artículo científico publicado en 2016

Dinosaur: A Refined Open-Source Peptide MS Feature Detector

artículo científico

Exploring the context of the lung proteome within the airway mucosa following allergen challenge

artículo científico publicado en 2004

Functional and phenotypical comparison of myofibroblasts derived from biopsies and bronchoalveolar lavage in mild asthma and scleroderma

artículo científico publicado en 2006

Functional and structural properties of a novel protein and virulence factor (Protein sHIP) in Streptococcus pyogenes

artículo científico publicado en 2014

Galectin-8 in IgA nephritis: decreased binding of IgA by galectin-8 affinity chromatography and associated increased binding in non-IgA serum glycoproteins.

artículo científico publicado en 2011

Glycoproteomic identification of galectin-3 and -8 ligands in bronchoalveolar lavage of mild asthmatics and healthy subjects

artículo científico publicado en 2012

Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

scholarly article by Hamed Khakzad et al published 18 April 2019 in BMC Bioinformatics

Heparan sulfate upregulates platelet-derived growth factor receptors on human lung fibroblasts

artículo científico publicado en 1998

Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

artículo científico publicado en 2017

Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics

artículo científico publicado en 2016

Leucocyte recruitment and molecular fortification of keratinocytes triggered by streptococcal M1 protein.

artículo científico publicado en 2017

Nanocapillary liquid chromatography interfaced to tandem matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry: mapping the nuclear proteome of human fibroblasts

artículo científico publicado en 2003

Neutrophil extracellular traps in the central nervous system hinder bacterial clearance during pneumococcal meningitis

artículo científico publicado en 2019

Numerical compression schemes for proteomics mass spectrometry data

artículo científico publicado en 2014

On-chip microextraction for proteomic sample preparation of in-gel digests

artículo científico publicado en 2002

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

artículo científico publicado en 2014

Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

artículo científico publicado en 2006

Perspectives of targeted mass spectrometry for protein biomarker verification

artículo científico publicado en 2009

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

artículo científico publicado en 2007

Protein expression changes in ovarian cancer during the transition from benign to malignant

artículo científico publicado en 2012

Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress.

artículo científico publicado en 2013

Proteoglycan and proteome profiling of central human pulmonary fibrotic tissue utilizing miniaturized sample preparation: a feasibility study

artículo científico publicado en 2002

Proteome annotations and identifications of the human pulmonary fibroblast

artículo científico publicado en 2004

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

artículo científico publicado en 2009

Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes ⬇️

artículo científico publicado el 1 de enero de 2012

Proteomic 2DE database for spot selection, automated annotation, and data analysis

artículo científico publicado en 2002

Proteomic analysis identifies candidate proteins associated with distant recurrences in breast cancer after adjuvant chemotherapy

artículo científico publicado en 2006

Proteomics -- the protein expression technology to study connective tissue biology.

artículo científico publicado en 2001

Quantifying extracellular matrix turnover in human lung scaffold cultures

artículo científico publicado en 2018

Quantitative Mass Spectrometry To Study Inflammatory Cartilage Degradation and Resulting Interactions with the Complement System

artículo científico publicado en 2016

Quantitative proteogenomics of human pathogens using DIA-MS.

artículo científico publicado en 2015

Quantitative proteomic analysis of fibroblast nuclear proteins after stimulation with mitogen activated protein kinase inhibiting heparan sulfate

artículo científico publicado en 2005

Quantitative proteomic characterization of lung-MSC and bone marrow-MSC using DIA-mass spectrometry

artículo científico

Quantitative proteomic characterization of the lung extracellular matrix in chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis

artículo científico publicado en 2018

Quantitative proteomics of microbes: Principles and applications to virulence ⬇️

artículo científico publicado el 4 de julio de 2011

Rapid determination of quaternary protein structures in complex biological samples

artículo científico publicado en 2019

Rtt101 and Mms1 in budding yeast form a CUL4(DDB1)-like ubiquitin ligase that promotes replication through damaged DNA

artículo científico publicado en 2008

Saliva-Induced Clotting Captures Streptococci: Novel Roles for Coagulation and Fibrinolysis in Host Defense and Immune Evasion

artículo científico publicado en 2016

Sepsis 2016 Agra, India. Agra, India. 5-6 February 2016

article by Surinder Kumar Sharma et al published 2 March 2016 in Critical Care

Simian Virus 40 depends on ER protein folding and quality control factors for entry into host cells

artículo científico publicado en 2007

Splicosomal and serine and arginine-rich splicing factors as targets for TGF-β.

artículo científico publicado en 2012

Stimulation of blood mononuclear cells with bacterial virulence factors leads to the release of pro-coagulant and pro-inflammatory microparticles

artículo científico publicado en 2011

Streptococcus pyogenes evades adaptive immunity through specific IgG glycan hydrolysis

scientific article published on 15 May 2019

Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry-based proteomics

artículo científico publicado en 2011

Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology

artículo científico publicado en 2021

Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria-human protein interactions

scientific article published on 19 February 2020

Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes

artículo científico publicado en 2016

Surface proteins of group G Streptococcus in different phases of growth: patterns of production and implications for the host-bacteria relationship

artículo científico publicado en 2013

Targeted Proteomics and Absolute Protein Quantification for the Construction of a Stoichiometric Host-Pathogen Surface Density Model

artículo científico publicado en 2017

Targeted mass spectrometry analysis of neutrophil-derived proteins released during sepsis progression

artículo científico publicado en 2014

Targeting hepatocytes from liver tissue by laser capture microdissection and proteomics expression profiling

artículo científico publicado en 2003

The TLR2 Antagonist Staphylococcal Superantigen-Like Protein 3 Acts as a Virulence Factor to Promote Bacterial Pathogenicity in vivo

artículo científico

The quantitative proteome of a human cell line.

artículo científico publicado en 2011

Transforming growth factor-beta 1 specifically induce proteins involved in the myofibroblast contractile apparatus

artículo científico publicado en 2004

Two-dimensional separation of human plasma proteins using iterative free-flow electrophoresis

artículo científico publicado en 2007

Visual proteomics of the human pathogen Leptospira interrogans

artículo científico publicado en 2009

Lista de obras de Johan Malmström

2DDB - a bioinformatics solution for analysis of quantitative proteomics data

A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery

A comprehensive analysis of the Streptococcus pyogenes and human plasma protein interaction network

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

A high-quality catalog of the Drosophila melanogaster proteome

A novel role for pro-coagulant microvesicles in the early host defense against streptococcus pyogenes.

A quantitative Streptococcus pyogenes-human protein-protein interaction map reveals localization of opsonizing antibodies.

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

Activation of platelet-derived growth factor pathway in human asthmatic pulmonary-derived mesenchymal cells

Advances in proteomic workflows for systems biology

Analysis of Bacterial Surface Interactions with Mass Spectrometry-Based Proteomics

Antibody orientation at bacterial surfaces is related to invasive infection.

Antiproliferative Heparan Sulfate Inhibiting Hyaluronan and Transforming Growth Factor-β Expression in Human Lung Fibroblast Cells: A Possible Antifibrotic Therapy?

Automated quality control system for LC-SRM setups

Automated selected reaction monitoring software for accurate label-free protein quantification

Automated workflow for large-scale selected reaction monitoring experiments

Biglycan isoforms with differences in polysaccharide substitution and core protein in human lung fibroblasts

Biosynthesis of dermatan sulfate: chondroitin-glucuronate C5-epimerase is identical to SART2

Cancer associated proteins in blood plasma: Determining normal variation

Characterization of Released Polypeptides During an Interferon-γ-Dependent Antibacterial Response in Airway Epithelial Cells ⬇️

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

Complement Activation Occurs at the Surface of Platelets Activated by Streptococcal M1 Protein and This Results in Phagocytosis of Platelets

Complete Removal of Extracellular IgG Antibodies in a Randomized Dose-Escalation Phase I Study with the Bacterial Enzyme IdeS--A Novel Therapeutic Opportunity

Comprehensive Mass Spectrometric Survey of Streptococcus pyogenes Subcellular Proteomes

Comprehensive Proteomic Characterization of Ontogenic Changes in Hematopoietic Stem and Progenitor Cells.

DIANA--algorithmic improvements for analysis of data-independent acquisition MS data

Data processing has major impact on the outcome of quantitative label-free LC-MS analysis

Data processing methods and quality control strategies for label-free LC-MS protein quantification

Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins

Different fractions of human serum glycoproteins bind galectin-1 or galectin-8, and their ratio may provide a refined biomarker for pathophysiological conditions in cancer and inflammatory disease

Differential compartmentalization of Streptococcus pyogenes virulence factors and host protein binding properties as a mechanism for host adaptation.

Dinosaur: A Refined Open-Source Peptide MS Feature Detector

Exploring the context of the lung proteome within the airway mucosa following allergen challenge

Functional and phenotypical comparison of myofibroblasts derived from biopsies and bronchoalveolar lavage in mild asthma and scleroderma

Functional and structural properties of a novel protein and virulence factor (Protein sHIP) in Streptococcus pyogenes

Galectin-8 in IgA nephritis: decreased binding of IgA by galectin-8 affinity chromatography and associated increased binding in non-IgA serum glycoproteins.

Glycoproteomic identification of galectin-3 and -8 ligands in bronchoalveolar lavage of mild asthmatics and healthy subjects

Greedy de novo motif discovery to construct motif repositories for bacterial proteomes

Heparan sulfate upregulates platelet-derived growth factor receptors on human lung fibroblasts

Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics

Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics

Leucocyte recruitment and molecular fortification of keratinocytes triggered by streptococcal M1 protein.

Nanocapillary liquid chromatography interfaced to tandem matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry: mapping the nuclear proteome of human fibroblasts

Neutrophil extracellular traps in the central nervous system hinder bacterial clearance during pneumococcal meningitis

Numerical compression schemes for proteomics mass spectrometry data

On-chip microextraction for proteomic sample preparation of in-gel digests

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

Perspectives of targeted mass spectrometry for protein biomarker verification

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

Protein expression changes in ovarian cancer during the transition from benign to malignant

Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress.

Proteoglycan and proteome profiling of central human pulmonary fibrotic tissue utilizing miniaturized sample preparation: a feasibility study

Proteome annotations and identifications of the human pulmonary fibroblast

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes ⬇️

Proteomic 2DE database for spot selection, automated annotation, and data analysis

Proteomic analysis identifies candidate proteins associated with distant recurrences in breast cancer after adjuvant chemotherapy

Proteomics -- the protein expression technology to study connective tissue biology.

Quantifying extracellular matrix turnover in human lung scaffold cultures

Quantitative Mass Spectrometry To Study Inflammatory Cartilage Degradation and Resulting Interactions with the Complement System

Quantitative proteogenomics of human pathogens using DIA-MS.

Quantitative proteomic analysis of fibroblast nuclear proteins after stimulation with mitogen activated protein kinase inhibiting heparan sulfate

Quantitative proteomic characterization of lung-MSC and bone marrow-MSC using DIA-mass spectrometry

Quantitative proteomic characterization of the lung extracellular matrix in chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis

Quantitative proteomics of microbes: Principles and applications to virulence ⬇️

Rapid determination of quaternary protein structures in complex biological samples

Rtt101 and Mms1 in budding yeast form a CUL4(DDB1)-like ubiquitin ligase that promotes replication through damaged DNA

Saliva-Induced Clotting Captures Streptococci: Novel Roles for Coagulation and Fibrinolysis in Host Defense and Immune Evasion

Sepsis 2016 Agra, India. Agra, India. 5-6 February 2016

Simian Virus 40 depends on ER protein folding and quality control factors for entry into host cells

Splicosomal and serine and arginine-rich splicing factors as targets for TGF-β.

Stimulation of blood mononuclear cells with bacterial virulence factors leads to the release of pro-coagulant and pro-inflammatory microparticles

Streptococcus pyogenes evades adaptive immunity through specific IgG glycan hydrolysis

Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry-based proteomics

Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology

Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria-human protein interactions

Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes

Surface proteins of group G Streptococcus in different phases of growth: patterns of production and implications for the host-bacteria relationship