Lista de obras - Gunnar W Klau - Dominio Público Uruguay

A branch-and-cut approach to the crossing number problem

A critical evaluation of network and pathway-based classifiers for outcome prediction in breast cancer

artículo científico publicado en 2012

A new graph-based method for pairwise global network alignment

artículo científico publicado en 2009

A realistic model under which the genetic code is optimal

artículo científico publicado en 2013

An Algorithmic Framework for the Exact Solution of the Prize-Collecting Steiner Tree Problem

An Experimental Comparison of Orthogonal Compaction Algorithms

scholarly article by Gunnar W Klau et al published 2001 in Lecture Notes in Computer Science

An integer linear programming approach for finding deregulated subgraphs in regulatory networks.

artículo científico publicado en 2011

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

artículo científico publicado en 2013

Antilope--a Lagrangian relaxation approach to the de novo peptide sequencing problem.

artículo científico publicado en 2011

BioNet: an R-Package for the functional analysis of biological networks

artículo científico publicado en 2010

Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data.

artículo científico publicado en 2015

CIDANE: comprehensive isoform discovery and abundance estimation

artículo científico publicado en 2016

CLEVER: clique-enumerating variant finder

artículo científico publicado en 2012

CSA: comprehensive comparison of pairwise protein structure alignments

artículo científico publicado en 2012

Charge Group Partitioning in Biomolecular Simulation

Charge group partitioning in biomolecular simulation

artículo científico publicado en 2013

Combining Graph Labeling and Compaction

article published in 1999

Current composite-feature classification methods do not outperform simple single-genes classifiers in breast cancer prognosis.

artículo científico publicado en 2013

DALIX: optimal DALI protein structure alignment.

artículo científico publicado en 2013

Exact Crossing Minimization

Functional module search in protein networks based on semantic similarity improves the analysis of proteomics data

artículo científico publicado en 2014

HapCol: accurate and memory-efficient haplotype assembly from long reads

artículo científico publicado en 2015

Haplotype threading: accurate polyploid phasing from long reads

scientific article published on 21 September 2020

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

artículo científico publicado en 2008

Integer Linear Programming in Computational Biology

Integer linear programming approaches for non-unique probe selection

Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum

artículo científico publicado en 2012

Integrating genetic dependencies and genomic alterations across pathways and cancer types

artículo científico publicado en 2020

Lagrangian Relaxation Applied to Sparse Global Network Alignment

Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy

artículo científico publicado en 2016

Mapping proteins in the presence of paralogs using units of coevolution

artículo científico publicado en 2013

NatalieQ: a web server for protein-protein interaction network querying

artículo científico publicado en 2014

On optimal comparability editing with applications to molecular diagnostics

artículo científico publicado en 2009

On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes.

artículo científico publicado en 2016

Optimal labeling of point features in rectangular labeling models

Optimal robust non-unique probe selection using Integer Linear Programming

artículo científico publicado en 2004

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation.

artículo científico publicado en 2009

Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.

artículo científico publicado en 2018

Probing the genome-scale metabolic landscape of Bordetella pertussis, the causative agent of whooping cough.

artículo científico

Robustness and accuracy of functional modules in integrated network analysis

article

Using anticlustering to partition data sets into equivalent parts

scientific article published on 22 June 2020

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.

artículo científico publicado en 2015

eXamine: Visualizing annotated networks in Cytoscape

scientific article published on 05 July 2018

eXamine: Visualizing annotated networks in Cytoscape.

artículo científico publicado en 2018

eXamine: exploring annotated modules in networks.

artículo científico publicado en 2014

metaModules identifies key functional subnetworks in microbiome-related disease

artículo científico publicado en 2015

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model

artículo científico publicado en 2015

Lista de obras de Gunnar W Klau

A branch-and-cut approach to the crossing number problem

A critical evaluation of network and pathway-based classifiers for outcome prediction in breast cancer

A new graph-based method for pairwise global network alignment

A realistic model under which the genetic code is optimal

An Algorithmic Framework for the Exact Solution of the Prize-Collecting Steiner Tree Problem

An Experimental Comparison of Orthogonal Compaction Algorithms

An integer linear programming approach for finding deregulated subgraphs in regulatory networks.

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

Antilope--a Lagrangian relaxation approach to the de novo peptide sequencing problem.

BioNet: an R-Package for the functional analysis of biological networks

Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data.

CIDANE: comprehensive isoform discovery and abundance estimation

CLEVER: clique-enumerating variant finder

CSA: comprehensive comparison of pairwise protein structure alignments

Charge Group Partitioning in Biomolecular Simulation

Charge group partitioning in biomolecular simulation

Combining Graph Labeling and Compaction

Current composite-feature classification methods do not outperform simple single-genes classifiers in breast cancer prognosis.

DALIX: optimal DALI protein structure alignment.

Exact Crossing Minimization

Functional module search in protein networks based on semantic similarity improves the analysis of proteomics data

HapCol: accurate and memory-efficient haplotype assembly from long reads

Haplotype threading: accurate polyploid phasing from long reads

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

Integer Linear Programming in Computational Biology

Integer linear programming approaches for non-unique probe selection

Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum

Integrating genetic dependencies and genomic alterations across pathways and cancer types

Lagrangian Relaxation Applied to Sparse Global Network Alignment

Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy

Mapping proteins in the presence of paralogs using units of coevolution

NatalieQ: a web server for protein-protein interaction network querying

On optimal comparability editing with applications to molecular diagnostics

On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes.

Optimal labeling of point features in rectangular labeling models

Optimal robust non-unique probe selection using Integer Linear Programming

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation.

Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.

Probing the genome-scale metabolic landscape of Bordetella pertussis, the causative agent of whooping cough.

Robustness and accuracy of functional modules in integrated network analysis

Using anticlustering to partition data sets into equivalent parts

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.

eXamine: Visualizing annotated networks in Cytoscape

eXamine: Visualizing annotated networks in Cytoscape.

eXamine: exploring annotated modules in networks.

metaModules identifies key functional subnetworks in microbiome-related disease

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model