Lista de obras - R Ramos - Dominio Público Uruguay

A novel cell line derived from pleomorphic adenoma expresses MMP2, MMP9, TIMP1, TIMP2, and shows numeric chromosomal anomalies

artículo científico publicado en 2014

Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics

artículo científico publicado en 2017

AutoAssemblyD: a graphical user interface system for several genome assemblers

artículo científico publicado en 2013

Campylobacter fetus subspecies: comparative genomics and prediction of potential virulence targets.

artículo científico publicado en 2012

Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis

scientific article published on 14 July 2020

Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo

artículo científico publicado en 2017

Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain 12C.

artículo científico publicado en 2015

Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain E19, Isolated from a Horse in Chile

artículo científico publicado en 2015

Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil

artículo científico publicado en 2016

Complete genome sequence of Corynebacterium pseudotuberculosis Cp31, isolated from an Egyptian buffalo

artículo científico publicado en 2012

Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology

artículo científico publicado en 2012

Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a horse in North America.

artículo científico publicado en 2012

Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya

artículo científico publicado en 2011

Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks.

artículo científico publicado en 2013

Complete genome sequence of type strain Campylobacter fetus subsp. venerealis NCTC 10354T.

artículo científico publicado en 2011

Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

artículo científico publicado en 2012

Conserved host-pathogen PPIs. Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by P

artículo científico publicado en 2013

Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses.

artículo científico publicado en 2015

DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis

artículo científico publicado en 2015

Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses

artículo científico publicado en 2014

Draft Genome Sequence of Corynebacterium pseudotuberculosis Strain PA07 Biovar ovis, Isolated from a Sheep Udder in Amazonia.

artículo científico publicado en 2017

Draft Genome Sequence of Corynebacterium striatum 1961 BR-RJ/09, a Multidrug-Susceptible Strain Isolated from the Urine of a Hospitalized 37-Year-Old Female Patient.

artículo científico publicado en 2015

Draft Genome Sequence of Corynebacterium ulcerans FRC58, Isolated from the Bronchitic Aspiration of a Patient in France.

scientific article published on 09 January 2014

Draft Genome Sequence of Corynebacterium ulcerans Strain 04-3911, Isolated from Humans

artículo científico publicado en 2016

Draft Genome Sequence of Mycobacterium abscessus subsp. bolletii INCQS 00594.

artículo científico publicado en 2013

Draft Genome Sequence of Serratia fonticola LMG 7882T Isolated from Freshwater

artículo científico publicado en 2013

Draft Genome Sequence of Serratia fonticola UTAD54, a Carbapenem-Resistant Strain Isolated from Drinking Water

artículo científico publicado en 2013

Draft Genome Sequence of Toxigenic Corynebacterium ulcerans Strain 03-8664 Isolated from a Human Throat

artículo científico publicado en 2016

Draft Genome Sequence of Toxigenic Corynebacterium ulcerans Strain 04-7514, Isolated from a Dog in France

artículo científico publicado en 2016

Draft Genome Sequence of the Brazilian Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa Strain SPC777.

artículo científico publicado en 2013

Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows

artículo científico publicado en 2016

Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests

artículo científico publicado en 2015

Erratum for Alves et al., Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil.

artículo científico publicado en 2016

Evaluation of the Common Molecular Basis in Alzheimer's and Parkinson's Diseases

artículo científico publicado en 2019

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains

artículo científico publicado en 2011

Exoproteome and secretome derived broad spectrum novel drug and vaccine candidates in Vibrio cholerae targeted by Piper betel derived compounds

artículo científico publicado en 2013

FunSys: Software for functional analysis of prokaryotic transcriptome and proteome

artículo científico publicado en 2012

GIPSy: Genomic island prediction software.

artículo científico publicado en 2015

GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data

artículo científico publicado en 2018

GapBlaster-A Graphical Gap Filler for Prokaryote Genomes

artículo científico publicado en 2016

Genome Sequence of Corynebacterium pseudotuberculosis MB20 bv. equi Isolated from a Pectoral Abscess of an Oldenburg Horse in California.

artículo científico publicado en 2014

Genome Sequence of Corynebacterium pseudotuberculosis Strain PA02 Isolated from an Ovine Host in the Amazon.

artículo científico publicado en 2016

Genome Sequence of Corynebacterium ulcerans Strain FRC11.

artículo científico publicado en 2015

Genome Sequence of Lactococcus lactis subsp. lactis NCDO 2118, a GABA-Producing Strain

artículo científico publicado en 2014

Genome informatics and vaccine targets in Corynebacterium urealyticum using two whole genomes, comparative genomics, and reverse vaccinology

artículo científico publicado en 2015

Genome of Leptospira borgpetersenii strain 4E, a highly virulent isolate obtained from Mus musculus in southern Brazil

artículo científico publicado en 2018

Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production

artículo científico publicado en 2012

Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica

artículo científico publicado en 2012

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse

artículo científico publicado en 2012

Genomic Architecture of the Two Cold-Adapted Genera Exiguobacterium and Psychrobacter: Evidence of Functional Reduction in the Exiguobacterium antarcticum B7 genome

artículo científico publicado en 2018

Genomic analysis of four strains of Corynebacterium pseudotuberculosis bv. Equi isolated from horses showing distinct signs of infection

artículo científico publicado en 2017

Graphical contig analyzer for all sequencing platforms (G4ALL): a new stand-alone tool for finishing and draft generation of bacterial genomes.

artículo científico publicado en 2013

Heat shock stress: Profile of differential expression in Corynebacterium pseudotuberculosis biovar Equi

artículo científico publicado en 2017

High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.

artículo científico publicado en 2013

High-throughput sequencing of black pepper root transcriptome

artículo científico publicado en 2012

Improving Metagenomic Assemblies Through Data Partitioning: A GC Content Approach

In silico prediction of conserved vaccine targets in Streptococcus agalactiae strains isolated from fish, cattle, and human samples.

artículo científico publicado en 2013

Ion Torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method.

artículo científico publicado en 2013

MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes

artículo científico publicado en 2015

Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation.

artículo científico publicado en 2014

Optimization of dengue virus genome assembling using GSFLX 454 pyrosequencing data: evaluation of assembling strategies

artículo científico publicado en 2012

PIPS: pathogenicity island prediction software.

artículo científico publicado en 2012

Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of potential core therapeutic targets.

artículo científico publicado en 2015

Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes.

artículo científico publicado en 2018

PanWeb: A web interface for pan-genomic analysis

artículo científico publicado en 2017

PhageWeb - Web Interface for Rapid Identification and Characterization of Prophages in Bacterial Genomes

scholarly article by Ailton Lopes de Sousa et al published 2018 in Frontiers in Genetics

Prediction of new vaccine targets in the core genome of Corynebacterium pseudotuberculosis through omics approaches and reverse vaccinology

scientific article published on 27 March 2019

Progression of 'OMICS' methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience

artículo científico publicado en 2013

Quality of prokaryote genome assembly: Indispensable issues of factors affecting prokaryote genome assembly quality

article

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study

article

Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes

scientific article published on 08 November 2019

Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data

artículo científico publicado en 2016

Reference genes for RT-qPCR studies in Corynebacterium pseudotuberculosis identified through analysis of RNA-seq data

artículo científico publicado en 2014

Resistome in Lake Bolonha, Brazilian Amazon: Identification of Genes Related to Resistance to Broad-Spectrum Antibiotics

artículo científico publicado en 2020

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology

artículo científico publicado en 2016

Simplifier: a web tool to eliminate redundant NGS contigs

artículo científico publicado en 2012

Text mining for identification of biological entities related to antibiotic resistant organisms

artículo científico publicado en 2022

The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome

artículo científico publicado en 2012

The assembly and annotation of the complete Rufous-bellied thrush mitochondrial genome

artículo científico publicado en 2015

The core stimulon of Corynebacterium pseudotuberculosis strain 1002 identified using ab initio methodologies

scientific article published on 28 May 2012

The detection and sequencing of a broad-host-range conjugative IncP-1β plasmid in an epidemic strain of Mycobacterium abscessus subsp. bolletii

artículo científico publicado en 2013

The experience of teaching introductory programming skills to bioscientists in Brazil

artículo científico publicado en 2021

The impact of quality filter for RNA-Seq.

artículo científico publicado en 2015

The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains

artículo científico publicado en 2013

Tips and tricks for the assembly of a Corynebacterium pseudotuberculosis genome using a semiconductor sequencer

artículo científico publicado en 2012

Value of a newly sequenced bacterial genome

artículo científico publicado en 2014

Whole Genome Annotation: In Silico Analysis

Whole-Genome Sequence of Corynebacterium pseudotuberculosis 262 Biovar equi Isolated from Cow Milk.

artículo científico publicado en 2016

Whole-Genome Sequence of Corynebacterium pseudotuberculosis PA04, Isolated from the Lymph Node of a Sheep in the Amazon, Brazil

artículo científico publicado en 2017

Whole-Genome Sequence of Corynebacterium pseudotuberculosis Strain 226, Isolated from the Abscess of a Goat in California

artículo científico

Whole-genome sequence of Corynebacterium pseudotuberculosis PAT10 strain isolated from sheep in Patagonia, Argentina

artículo científico publicado en 2011

Whole-genome sequence of Corynebacterium pseudotuberculosis strain Cp162, isolated from camel.

artículo científico publicado en 2012

Lista de obras de R Ramos

A novel cell line derived from pleomorphic adenoma expresses MMP2, MMP9, TIMP1, TIMP2, and shows numeric chromosomal anomalies

Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics

AutoAssemblyD: a graphical user interface system for several genome assemblers

Campylobacter fetus subspecies: comparative genomics and prediction of potential virulence targets.

Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis

Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo

Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain 12C.

Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain E19, Isolated from a Horse in Chile

Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil

Complete genome sequence of Corynebacterium pseudotuberculosis Cp31, isolated from an Egyptian buffalo

Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology

Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a horse in North America.

Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya

Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks.

Complete genome sequence of type strain Campylobacter fetus subsp. venerealis NCTC 10354T.

Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

Conserved host-pathogen PPIs. Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by P

Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses.

DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis

Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses

Draft Genome Sequence of Corynebacterium pseudotuberculosis Strain PA07 Biovar ovis, Isolated from a Sheep Udder in Amazonia.

Draft Genome Sequence of Corynebacterium striatum 1961 BR-RJ/09, a Multidrug-Susceptible Strain Isolated from the Urine of a Hospitalized 37-Year-Old Female Patient.

Draft Genome Sequence of Corynebacterium ulcerans FRC58, Isolated from the Bronchitic Aspiration of a Patient in France.

Draft Genome Sequence of Corynebacterium ulcerans Strain 04-3911, Isolated from Humans

Draft Genome Sequence of Mycobacterium abscessus subsp. bolletii INCQS 00594.

Draft Genome Sequence of Serratia fonticola LMG 7882T Isolated from Freshwater

Draft Genome Sequence of Serratia fonticola UTAD54, a Carbapenem-Resistant Strain Isolated from Drinking Water

Draft Genome Sequence of Toxigenic Corynebacterium ulcerans Strain 03-8664 Isolated from a Human Throat

Draft Genome Sequence of Toxigenic Corynebacterium ulcerans Strain 04-7514, Isolated from a Dog in France

Draft Genome Sequence of the Brazilian Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa Strain SPC777.

Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows

Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests

Erratum for Alves et al., Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil.

Evaluation of the Common Molecular Basis in Alzheimer's and Parkinson's Diseases

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains

Exoproteome and secretome derived broad spectrum novel drug and vaccine candidates in Vibrio cholerae targeted by Piper betel derived compounds

FunSys: Software for functional analysis of prokaryotic transcriptome and proteome

GIPSy: Genomic island prediction software.

GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data

GapBlaster-A Graphical Gap Filler for Prokaryote Genomes

Genome Sequence of Corynebacterium pseudotuberculosis MB20 bv. equi Isolated from a Pectoral Abscess of an Oldenburg Horse in California.

Genome Sequence of Corynebacterium pseudotuberculosis Strain PA02 Isolated from an Ovine Host in the Amazon.

Genome Sequence of Corynebacterium ulcerans Strain FRC11.

Genome Sequence of Lactococcus lactis subsp. lactis NCDO 2118, a GABA-Producing Strain

Genome informatics and vaccine targets in Corynebacterium urealyticum using two whole genomes, comparative genomics, and reverse vaccinology

Genome of Leptospira borgpetersenii strain 4E, a highly virulent isolate obtained from Mus musculus in southern Brazil

Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production

Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse

Genomic Architecture of the Two Cold-Adapted Genera Exiguobacterium and Psychrobacter: Evidence of Functional Reduction in the Exiguobacterium antarcticum B7 genome

Genomic analysis of four strains of Corynebacterium pseudotuberculosis bv. Equi isolated from horses showing distinct signs of infection

Graphical contig analyzer for all sequencing platforms (G4ALL): a new stand-alone tool for finishing and draft generation of bacterial genomes.

Heat shock stress: Profile of differential expression in Corynebacterium pseudotuberculosis biovar Equi

High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.

High-throughput sequencing of black pepper root transcriptome

Improving Metagenomic Assemblies Through Data Partitioning: A GC Content Approach

In silico prediction of conserved vaccine targets in Streptococcus agalactiae strains isolated from fish, cattle, and human samples.

Ion Torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method.

MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes

Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation.

Optimization of dengue virus genome assembling using GSFLX 454 pyrosequencing data: evaluation of assembling strategies

PIPS: pathogenicity island prediction software.

Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of potential core therapeutic targets.

Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes.

PanWeb: A web interface for pan-genomic analysis

PhageWeb - Web Interface for Rapid Identification and Characterization of Prophages in Bacterial Genomes

Prediction of new vaccine targets in the core genome of Corynebacterium pseudotuberculosis through omics approaches and reverse vaccinology

Progression of 'OMICS' methodologies for understanding the pathogenicity of Corynebacterium pseudotuberculosis: the Brazilian experience

Quality of prokaryote genome assembly: Indispensable issues of factors affecting prokaryote genome assembly quality

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study

Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes

Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data

Reference genes for RT-qPCR studies in Corynebacterium pseudotuberculosis identified through analysis of RNA-seq data

Resistome in Lake Bolonha, Brazilian Amazon: Identification of Genes Related to Resistance to Broad-Spectrum Antibiotics

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology

Simplifier: a web tool to eliminate redundant NGS contigs

Text mining for identification of biological entities related to antibiotic resistant organisms

The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome

The assembly and annotation of the complete Rufous-bellied thrush mitochondrial genome