Lista de obras - Tsutomu Katayama - Dominio Público Uruguay

A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin

artículo científico publicado en 2008

A replicase clamp-binding dynamin-like protein promotes colocalization of nascent DNA strands and equipartitioning of chromosomes in E. coli.

artículo científico publicado en 2013

A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli

artículo científico publicado en 1998

AAA+ proteins. Editorial

artículo científico publicado en 2012

Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli

scientific article published on 01 March 1997

An isolated Hda-clamp complex is functional in the regulatory inactivation of DnaA and DNA replication.

artículo científico publicado en 2006

Arrest of cell division and nucleoid partition by genetic alterations in the sliding clamp of the replicase and in DnaA

scientific article published on 01 October 2001

Assignment of 1H, 13C and 15N resonances of N-terminal domain of DnaA protein.

artículo científico publicado en 2007

Basic and aromatic residues in the C-terminal domain of PriC are involved in ssDNA and SSB binding

artículo científico publicado en 2015

Bioconjugation of Oligodeoxynucleotides Carrying 1,4-Dicarbonyl Groups via Reductive Amination with Lysine Residues.

artículo científico

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

artículo científico publicado en 2005

Chromosomal location of the DnaA-reactivating sequence DARS2 is important to regulate timely initiation of DNA replication in Escherichia coli

artículo científico publicado en 2016

Cooperative DnaA Binding to the Negatively Supercoiled datA Locus Stimulates DnaA-ATP Hydrolysis.

artículo científico publicado en 2016

Cooperative working of bacterial chromosome replication proteins generated by a reconstituted protein expression system ⬇️

artículo científico publicado el 3 de junio de 2013

CrfC Protein, a Nucleoid Partition Factor, Localizes to Nucleoid Poles via the Activities of Specific Nucleoid-Associated Proteins

artículo científico publicado en 2019

Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site.

artículo científico publicado en 2005

DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts

artículo científico publicado en 2014

DNA replication defects in a mutant deficient in the thioredoxin homolog YbbN ⬇️

artículo científico publicado el 31 de diciembre de 2010

Decrease in expression of the master operon of flagellin synthesis in a dnaA46 mutant of Escherichia coli.

artículo científico publicado en 1997

Determination of the secondary structure in solution of the Escherichia coli DnaA DNA-binding domain.

artículo científico publicado en 2002

DiaA dynamics are coupled with changes in initial origin complexes leading to helicase loading.

artículo científico publicado en 2009

DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication.

artículo científico publicado en 2004

Differentiation of the DnaA-oriC subcomplex for DNA unwinding in a replication initiation complex.

artículo científico publicado en 2012

DnaA Protein Lys-415 Is Close to the ATP-Binding Site: ATP-Pyridoxal Affinity Labeling ⬇️

artículo científico publicado el 16 de noviembre de 2001

DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation

artículo científico publicado en 2012

DnaA protein DNA-binding domain binds to Hda protein to promote inter-AAA+ domain interaction involved in regulatory inactivation of DnaA.

artículo científico

DnaA protein is sensitive to a soluble factor and is specifically inactivated for initiation of in vitro replication of the Escherichia coli minichromosome.

artículo científico publicado en 1995

DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity.

artículo científico publicado en 2010

DnaB helicase is recruited to the replication initiation complex via binding of DnaA domain I to the lateral surface of the DnaB N-terminal domain

artículo científico publicado en 2020

Domain separation and characterization of PriC, a replication restart primosome factor in Escherichia coli.

artículo científico publicado en 2013

Exponential propagation of large circular DNA by reconstitution of a chromosome-replication cycle.

artículo científico publicado en 2017

Expression of a Vibrio parahaemolyticus toxin in Escherichia coli results in chromosomal DNA degradation

artículo científico publicado en 2017

Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro ⬇️

artículo científico publicado el 1 de mayo de 2003

Feedback controls restrain the initiation of Escherichia coli chromosomal replication.

artículo científico publicado en 2001

Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family.

artículo científico publicado en 2005

Functional analysis of CedA based on its structure: residues important in binding of DNA and RNA polymerase and in the cell division regulation.

artículo científico publicado en 2015

Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis.

artículo científico publicado en 2008

Identification of the region in Escherichia coli DnaA protein required for specific recognition of the DnaA box.

artículo científico

Inhibition of cell growth and stable DNA replication by overexpression of the bla gene of plasmid pBR322 in Escherichia coli.

artículo científico publicado en 1990

Initiation of DNA Replication at the Chromosomal Origin of E. coli, oriC.

artículo científico publicado en 2017

Initiation of chromosomal DNA replication which is stimulated without oversupply of DnaA protein in Escherichia coli

scientific article published on 01 May 1991

Involvement of histidine in complex formation of PriB and single-stranded DNA.

artículo científico publicado en 2013

Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation.

artículo científico publicado en 2006

Isolation and characterization of inhibitory factors of DNA polymerase III holoenzyme from Escherichia coli

artículo científico publicado en 1995

Long inverted repeat transiently stalls DNA replication by forming hairpin structures on both leading and lagging strands

artículo científico publicado en 2016

Molecular design of inhibitors of in vitro oriC DNA replication based on the potential to block the ATP binding of DnaA protein

artículo científico publicado en 1996

Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex.

artículo científico publicado en 2004

Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights.

artículo científico publicado en 2016

Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: unique roles for Hda AAA Box VI and VII motifs

scientific article published on 01 February 2010

Rapid Purification and Characterization of Mutant Origin Recognition Complexes in Saccharomyces cerevisiae.

artículo científico publicado en 2016

Reactivation of DnaA by DNA sequence-specific nucleotide exchange in vitro.

artículo científico publicado en 2004

Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

artículo científico publicado en 2010

Regulatory dynamics in the ternary DnaA complex for initiation of chromosomal replication in Escherichia coli.

artículo científico publicado en 2017

Replication-Dependent Recruitment of the β-Subunit of DNA Polymerase III from Cytosolic Spaces to Replication Forks in Escherichia coli ⬇️

artículo científico publicado el 1 de febrero de 2002

Report from the Working Group of the Molecular Biology Society of Japan for the investigation of fraud in research papers.

artículo científico publicado en 2009

Roles for the AAA+ motifs of DnaA in the initiation of DNA replication.

artículo científico publicado en 2008

Short CCG repeat in huntingtin gene is an obstacle for replicative DNA polymerases, potentially hampering progression of replication fork.

artículo científico publicado en 2015

Site-Specific Turn-On Fluorescent Labeling of DNA-Interacting Protein Using Oligodeoxynucleotides That Modify Lysines To Produce 5,6-Dimethoxy 3-Methyleneisoindolin-1-one.

artículo científico publicado en 2016

Site-directed mutational analysis for the ATP binding of DnaA protein. Functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo.

artículo científico publicado en 1998

Specific basic patch-dependent multimerization of Saccharomyces cerevisiae ORC on single-stranded DNA promotes ATP hydrolysis

artículo científico publicado en 2019

Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues

artículo científico publicado en 2015

Stable nucleotide binding to DnaA requires a specific glutamic acid residue within the AAA+ box II motif

artículo científico publicado en 2012

Structural basis of replication origin recognition by the DnaA protein

artículo científico publicado en 2003

Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC.

artículo científico publicado en 2007

Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex

artículo científico publicado en 2014

Suppressors of DnaA(ATP) imposed overinitiation in Escherichia coli.

artículo científico publicado en 2010

The Arg Fingers of Key DnaA Protomers Are Oriented Inward within the Replication Origin oriC and Stimulate DnaA Subcomplexes in the Initiation Complex

artículo científico publicado en 2015

The DnaA AAA+ Domain His136 Residue Directs DnaB Replicative Helicase to the Unwound Region of the Replication Origin,

artículo científico publicado en 2018

The DnaA Cycle in Escherichia coli: Activation, Function and Inactivation of the Initiator Protein.

artículo científico publicado en 2017

The DnaA N-terminal domain interacts with Hda to facilitate replicase clamp-mediated inactivation of DnaA.

artículo científico publicado en 2013

The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner

artículo científico publicado en 2006

The Escherichia coli Cryptic Prophage Protein YfdR Binds to DnaA and Initiation of Chromosomal Replication Is Inhibited by Overexpression of the Gene Cluster yfdQ-yfdR-yfdS-yfdT

artículo científico publicado en 2016

The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.

artículo científico publicado en 1998

The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes

artículo científico publicado en 2007

The nucleoid protein H-NS facilitates chromosome DNA replication in Escherichia coli dnaA mutants.

artículo científico publicado en 1996

Timely binding of IHF and Fis to DARS2 regulates ATP-DnaA production and replication initiation.

artículo científico publicado en 2014

Transcriptional control for initiation of chromosomal replication in Escherichia coli: fluctuation of the level of origin transcription ensures timely initiation

artículo científico publicado en 2003

X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation

artículo científico publicado en 2017

Lista de obras de Tsutomu Katayama

A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin

A replicase clamp-binding dynamin-like protein promotes colocalization of nascent DNA strands and equipartitioning of chromosomes in E. coli.

A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli

AAA+ proteins. Editorial

Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli

An isolated Hda-clamp complex is functional in the regulatory inactivation of DnaA and DNA replication.

Arrest of cell division and nucleoid partition by genetic alterations in the sliding clamp of the replicase and in DnaA

Assignment of 1H, 13C and 15N resonances of N-terminal domain of DnaA protein.

Basic and aromatic residues in the C-terminal domain of PriC are involved in ssDNA and SSB binding

Bioconjugation of Oligodeoxynucleotides Carrying 1,4-Dicarbonyl Groups via Reductive Amination with Lysine Residues.

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

Chromosomal location of the DnaA-reactivating sequence DARS2 is important to regulate timely initiation of DNA replication in Escherichia coli

Cooperative DnaA Binding to the Negatively Supercoiled datA Locus Stimulates DnaA-ATP Hydrolysis.

Cooperative working of bacterial chromosome replication proteins generated by a reconstituted protein expression system ⬇️

CrfC Protein, a Nucleoid Partition Factor, Localizes to Nucleoid Poles via the Activities of Specific Nucleoid-Associated Proteins

Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site.

DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts

DNA replication defects in a mutant deficient in the thioredoxin homolog YbbN ⬇️

Decrease in expression of the master operon of flagellin synthesis in a dnaA46 mutant of Escherichia coli.

Determination of the secondary structure in solution of the Escherichia coli DnaA DNA-binding domain.

DiaA dynamics are coupled with changes in initial origin complexes leading to helicase loading.

DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication.

Differentiation of the DnaA-oriC subcomplex for DNA unwinding in a replication initiation complex.

DnaA Protein Lys-415 Is Close to the ATP-Binding Site: ATP-Pyridoxal Affinity Labeling ⬇️

DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation

DnaA protein DNA-binding domain binds to Hda protein to promote inter-AAA+ domain interaction involved in regulatory inactivation of DnaA.

DnaA protein is sensitive to a soluble factor and is specifically inactivated for initiation of in vitro replication of the Escherichia coli minichromosome.

DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity.

DnaB helicase is recruited to the replication initiation complex via binding of DnaA domain I to the lateral surface of the DnaB N-terminal domain

Domain separation and characterization of PriC, a replication restart primosome factor in Escherichia coli.

Exponential propagation of large circular DNA by reconstitution of a chromosome-replication cycle.

Expression of a Vibrio parahaemolyticus toxin in Escherichia coli results in chromosomal DNA degradation

Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro ⬇️

Feedback controls restrain the initiation of Escherichia coli chromosomal replication.

Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family.

Functional analysis of CedA based on its structure: residues important in binding of DNA and RNA polymerase and in the cell division regulation.

Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis.

Identification of the region in Escherichia coli DnaA protein required for specific recognition of the DnaA box.

Inhibition of cell growth and stable DNA replication by overexpression of the bla gene of plasmid pBR322 in Escherichia coli.

Initiation of DNA Replication at the Chromosomal Origin of E. coli, oriC.

Initiation of chromosomal DNA replication which is stimulated without oversupply of DnaA protein in Escherichia coli

Involvement of histidine in complex formation of PriB and single-stranded DNA.

Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation.

Isolation and characterization of inhibitory factors of DNA polymerase III holoenzyme from Escherichia coli

Long inverted repeat transiently stalls DNA replication by forming hairpin structures on both leading and lagging strands

Molecular design of inhibitors of in vitro oriC DNA replication based on the potential to block the ATP binding of DnaA protein

Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex.

Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights.

Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: unique roles for Hda AAA Box VI and VII motifs

Rapid Purification and Characterization of Mutant Origin Recognition Complexes in Saccharomyces cerevisiae.

Reactivation of DnaA by DNA sequence-specific nucleotide exchange in vitro.

Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

Regulatory dynamics in the ternary DnaA complex for initiation of chromosomal replication in Escherichia coli.

Replication-Dependent Recruitment of the β-Subunit of DNA Polymerase III from Cytosolic Spaces to Replication Forks in Escherichia coli ⬇️

Report from the Working Group of the Molecular Biology Society of Japan for the investigation of fraud in research papers.

Roles for the AAA+ motifs of DnaA in the initiation of DNA replication.

Short CCG repeat in huntingtin gene is an obstacle for replicative DNA polymerases, potentially hampering progression of replication fork.

Site-Specific Turn-On Fluorescent Labeling of DNA-Interacting Protein Using Oligodeoxynucleotides That Modify Lysines To Produce 5,6-Dimethoxy 3-Methyleneisoindolin-1-one.

Site-directed mutational analysis for the ATP binding of DnaA protein. Functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo.

Specific basic patch-dependent multimerization of Saccharomyces cerevisiae ORC on single-stranded DNA promotes ATP hydrolysis

Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues

Stable nucleotide binding to DnaA requires a specific glutamic acid residue within the AAA+ box II motif

Structural basis of replication origin recognition by the DnaA protein

Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC.

Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex

Suppressors of DnaA(ATP) imposed overinitiation in Escherichia coli.

The Arg Fingers of Key DnaA Protomers Are Oriented Inward within the Replication Origin oriC and Stimulate DnaA Subcomplexes in the Initiation Complex

The DnaA AAA+ Domain His136 Residue Directs DnaB Replicative Helicase to the Unwound Region of the Replication Origin,

The DnaA Cycle in Escherichia coli: Activation, Function and Inactivation of the Initiator Protein.

The DnaA N-terminal domain interacts with Hda to facilitate replicase clamp-mediated inactivation of DnaA.

The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner

The Escherichia coli Cryptic Prophage Protein YfdR Binds to DnaA and Initiation of Chromosomal Replication Is Inhibited by Overexpression of the Gene Cluster yfdQ-yfdR-yfdS-yfdT

The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.

The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes

The nucleoid protein H-NS facilitates chromosome DNA replication in Escherichia coli dnaA mutants.

Timely binding of IHF and Fis to DARS2 regulates ATP-DnaA production and replication initiation.

Transcriptional control for initiation of chromosomal replication in Escherichia coli: fluctuation of the level of origin transcription ensures timely initiation

X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation