Lista de obras - Javier Vargas - Dominio Público Uruguay

A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.

artículo científico publicado en 2017

A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function.

artículo científico publicado en 2015

A new algorithm for high-resolution reconstruction of single particles by electron microscopy

artículo científico publicado en 2018

A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs ⬇️

artículo científico publicado el 19 de agosto de 2013

A review of resolution measures and related aspects in 3D Electron Microscopy

artículo científico publicado en 2016

A robust approach to ab initio cryo-electron microscopy initial volume determination

artículo científico publicado en 2019

A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy.

artículo científico publicado en 2015

Alignment of direct detection device micrographs using a robust Optical Flow approach.

artículo científico publicado en 2015

Analysis of the principal component algorithm in phase-shifting interferometry.

artículo científico publicado en 2011

Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ

artículo científico publicado en 2016

Automatic local resolution-based sharpening of cryo-EM maps

scientific article published on 01 February 2020

Blind estimation of DED camera gain in Electron Microscopy

artículo científico publicado en 2018

CESPED: A benchmark for supervised particle pose estimation in cryo-EM

artículo científico publicado en 2024

CTF Challenge: Result summary.

artículo científico publicado en 2015

Calibration of a Shack-Hartmann wavefront sensor as an orthographic camera

artículo científico publicado en 2010

Circular common-path point diffraction interferometer

artículo científico publicado en 2012

Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited.

artículo científico publicado en 2015

Deep Learning for Validating and Estimating Resolution of Cryo-Electron Microscopy Density Maps

article

Deflectometric method for the measurement of user power for ophthalmic lenses

artículo científico publicado en 2010

Denoising of high-resolution single-particle electron-microscopy density maps by their approximation using three-dimensional Gaussian functions

artículo científico publicado en 2016

Direct demodulation of closed-fringe interferograms based on active contours

scientific article published on 01 November 2010

Efficient initial volume determination from electron microscopy images of single particles

artículo científico publicado en 2014

Fast and automatic identification of particle tilt pairs based on Delaunay triangulation.

artículo científico publicado en 2016

Fast two-dimensional simultaneous phase unwrapping and low-pass filtering.

artículo científico publicado en 2012

Foil-hole and data image quality assessment in 3DEM: Towards high-throughput image acquisition in the electron microscope

artículo científico publicado en 2016

Imaging polarimeters based on liquid crystal variable retarders: an emergent technology for space instrumentation

Local analysis of strains and rotations for macromolecular electron microscopy maps

artículo científico publicado en 2016

Local computational methods to improve the interpretability and analysis of cryo-EM maps

artículo científico publicado en 2020

Local fringe density determination by adaptive filtering

artículo científico publicado en 2011

MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps

artículo científico publicado en 2018

Multiplicative phase-shifting interferometry using optical flow.

artículo científico publicado en 2012

Multiresolution approach based on projection matrices

artículo científico publicado en 2009

On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy ⬇️

artículo científico publicado el 19 de abril de 2013

Optical inspection of liquid crystal variable retarder inhomogeneities

artículo científico publicado en 2010

Particle alignment reliability in single particle electron cryomicroscopy: a general approach

artículo científico publicado en 2016

Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques ⬇️

artículo científico publicado el 6 de agosto de 2013

Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap.

artículo científico

Phase-shifting interferometry based on induced vibrations

artículo científico publicado en 2011

Phase-shifting interferometry based on principal component analysis.

artículo científico publicado en 2011

Precise phase retrieval under harsh conditions by constructing new connected interferograms

artículo científico publicado en 2016

Principal component analysis-based quantitative differential interference contrast microscopy

scientific article published on 01 January 2019

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis.

artículo científico publicado en 2017

Regularized least squares phase sampling interferometry ⬇️

artículo científico publicado el 14 de marzo de 2011

Role of the filter phase in phase sampling interferometry.

artículo científico publicado en 2011

Scipion web tools: Easy to use cryo-EM image processing over the web.

artículo científico publicado en 2017

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

artículo científico publicado en 2016

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy.

artículo científico publicado en 2013

Separating Actin-Dependent Chemokine Receptor Nanoclustering from Dimerization Indicates a Role for Clustering in CXCR4 Signaling and Function

artículo científico publicado en 2018

Separating Actin-Dependent Chemokine Receptor Nanoclustering from Dimerization Indicates a Role for Clustering in CXCR4 Signaling and Function

scientific article published on 01 September 2018

Shack-Hartmann centroid detection using the spiral phase transform.

artículo científico publicado en 2012

Shack-Hartmann spot dislocation map determination using an optical flow method

artículo científico publicado en 2014

Single-particle electron microscopy structure of UDP-glucose:glycoprotein glucosyltransferase suggests a selectivity mechanism for misfolded proteins

artículo científico publicado en 2017

Space-qualified liquid-crystal variable retarders for wide-field-of-view coronagraphs

Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy

artículo científico publicado en 2019

The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications

scientific article published on 17 January 2020

Three-dimensional reconstruction methods in Single Particle Analysis from transmission electron microscopy data

artículo científico publicado en 2015

Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins

artículo científico publicado en 2019

Two-step demodulation based on the Gram-Schmidt orthonormalization method

artículo científico publicado en 2012

Two-step interferometry by a regularized optical flow algorithm.

artículo científico publicado en 2011

Two-step self-tuning phase-shifting interferometry

artículo científico publicado en 2011

Windowed phase unwrapping using a first-order dynamic system following iso-phase contours

artículo científico publicado en 2012

XTEND: Extending the depth of field in cryo soft X-ray tomography

artículo científico publicado en 2017

Xmipp 3.0: an improved software suite for image processing in electron microscopy

artículo científico publicado en 2013

Lista de obras de Javier Vargas

A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.

A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function.

A new algorithm for high-resolution reconstruction of single particles by electron microscopy

A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs ⬇️

A review of resolution measures and related aspects in 3D Electron Microscopy

A robust approach to ab initio cryo-electron microscopy initial volume determination

A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy.

Alignment of direct detection device micrographs using a robust Optical Flow approach.

Analysis of the principal component algorithm in phase-shifting interferometry.

Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ

Automatic local resolution-based sharpening of cryo-EM maps

Blind estimation of DED camera gain in Electron Microscopy

CESPED: A benchmark for supervised particle pose estimation in cryo-EM

CTF Challenge: Result summary.

Calibration of a Shack-Hartmann wavefront sensor as an orthographic camera

Circular common-path point diffraction interferometer

Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited.

Deep Learning for Validating and Estimating Resolution of Cryo-Electron Microscopy Density Maps

Deflectometric method for the measurement of user power for ophthalmic lenses

Denoising of high-resolution single-particle electron-microscopy density maps by their approximation using three-dimensional Gaussian functions

Direct demodulation of closed-fringe interferograms based on active contours

Efficient initial volume determination from electron microscopy images of single particles

Fast and automatic identification of particle tilt pairs based on Delaunay triangulation.

Fast two-dimensional simultaneous phase unwrapping and low-pass filtering.

Foil-hole and data image quality assessment in 3DEM: Towards high-throughput image acquisition in the electron microscope

Imaging polarimeters based on liquid crystal variable retarders: an emergent technology for space instrumentation

Local analysis of strains and rotations for macromolecular electron microscopy maps

Local computational methods to improve the interpretability and analysis of cryo-EM maps

Local fringe density determination by adaptive filtering

MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps

Multiplicative phase-shifting interferometry using optical flow.

Multiresolution approach based on projection matrices

On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy ⬇️

Optical inspection of liquid crystal variable retarder inhomogeneities

Particle alignment reliability in single particle electron cryomicroscopy: a general approach

Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques ⬇️

Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap.

Phase-shifting interferometry based on induced vibrations

Phase-shifting interferometry based on principal component analysis.

Precise phase retrieval under harsh conditions by constructing new connected interferograms

Principal component analysis-based quantitative differential interference contrast microscopy

Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis.

Regularized least squares phase sampling interferometry ⬇️

Role of the filter phase in phase sampling interferometry.

Scipion web tools: Easy to use cryo-EM image processing over the web.

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy.

Separating Actin-Dependent Chemokine Receptor Nanoclustering from Dimerization Indicates a Role for Clustering in CXCR4 Signaling and Function

Separating Actin-Dependent Chemokine Receptor Nanoclustering from Dimerization Indicates a Role for Clustering in CXCR4 Signaling and Function

Shack-Hartmann centroid detection using the spiral phase transform.

Shack-Hartmann spot dislocation map determination using an optical flow method

Single-particle electron microscopy structure of UDP-glucose:glycoprotein glucosyltransferase suggests a selectivity mechanism for misfolded proteins

Space-qualified liquid-crystal variable retarders for wide-field-of-view coronagraphs

Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy

The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications

Three-dimensional reconstruction methods in Single Particle Analysis from transmission electron microscopy data

Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins

Two-step demodulation based on the Gram-Schmidt orthonormalization method

Two-step interferometry by a regularized optical flow algorithm.

Two-step self-tuning phase-shifting interferometry

Windowed phase unwrapping using a first-order dynamic system following iso-phase contours

XTEND: Extending the depth of field in cryo soft X-ray tomography

Xmipp 3.0: an improved software suite for image processing in electron microscopy