Lista de obras - Andrei Tokmakoff - Dominio Público Uruguay

5-Carboxylcytosine and Cytosine Protonation Distinctly Alter the Stability and Dehybridization Dynamics of the DNA Duplex

scientific article published on 14 January 2020

A lattice model for the interpretation of oligonucleotide hybridization experiments

scientific article published on 01 May 2019

A molecular interpretation of 2D IR protein folding experiments with Markov state models

artículo científico publicado en 2014

A phenomenological approach to modeling chemical dynamics in nonlinear and two-dimensional spectroscopy ⬇️

artículo científico publicado el 7 de abril de 2012

Amide I Two-Dimensional Infrared Spectroscopy: Methods for Visualizing the Vibrational Structure of Large Proteins ⬇️

artículo científico publicado el 27 de diciembre de 2012

Amide I two-dimensional infrared spectroscopy of proteins

artículo científico publicado en 2008

Amide I two-dimensional infrared spectroscopy of β-hairpin peptides

artículo científico publicado en 2007

Amide I vibrational dynamics of N-methylacetamide in polar solvents: the role of electrostatic interactions

artículo científico publicado en 2005

Amide I'-II' 2D IR spectroscopy provides enhanced protein secondary structural sensitivity

artículo científico publicado en 2009

Anharmonic Vibrational Modes of Nucleic Acid Bases Revealed by 2D IR Spectroscopy

article

Anharmonic exciton dynamics and energy dissipation in liquid water from two-dimensional infrared spectroscopy

artículo científico publicado en 2016

Broadband 2D IR spectroscopy reveals dominant asymmetric H5O2+ proton hydration structures in acid solutions

scientific article published on 30 July 2018

Characterization of spectral diffusion from two-dimensional line shapes

artículo científico publicado en 2006

Chemistry. Shining light on the rapidly evolving structure of water

scientific article published on 01 July 2007

Coherent two-dimensional infrared spectroscopy: quantitative analysis of protein secondary structure in solution.

artículo científico publicado en 2012

Collective Hydrogen Bond Reorganization in Water Studied with Temperature-Dependent Ultrafast Infrared Spectroscopy ⬇️

artículo científico publicado el 18 de marzo de 2011

Collective vibrations of water-solvated hydroxide ions investigated with broadband 2DIR spectroscopy

scientific article published on 01 May 2014

Communication: Quantitative multi-site frequency maps for amide I vibrational spectroscopy.

artículo científico publicado en 2015

Computational Amide I 2D IR Spectroscopy as a Probe of Protein Structure and Dynamics.

artículo científico publicado en 2016

Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin.

artículo científico publicado en 2005

Cooperative cold denaturation: the case of the C-terminal domain of ribosomal protein L9.

artículo científico publicado en 2013

Correction to "Length-Dependent Melting Kinetics of Short DNA Oligonucleotides Using Temperature-Jump IR Spectroscopy"

scientific article published on 28 February 2019

Correction: Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy

artículo científico publicado en 2017

Correlated vibrational dynamics revealed by two-dimensional infrared spectroscopy

artículo científico publicado en 2002

Crossover from hydrogen to chemical bonding

artículo científico publicado en 2021

Crystallization of Enantiomerically Pure Proteins from Quasi-Racemic Mixtures: Structure Determination by X-Ray Diffraction of Isotope-Labeled Ester Insulin and Human Insulin

artículo científico publicado en 2016

DNA minor-groove binder Hoechst 33258 destabilizes base-pairing adjacent to its binding site

scientific article published on 22 September 2020

Decoding the 2D IR spectrum of the aqueous proton with high-level VSCF/VCI calculations

artículo científico publicado en 2020

Delocalization and stretch-bend mixing of the HOH bend in liquid water.

artículo científico publicado en 2017

Determining Sequence-Dependent DNA Oligonucleotide Hybridization and Dehybridization Mechanisms Using Coarse-Grained Molecular Simulation, Markov State Models, and Infrared Spectroscopy

artículo científico publicado en 2021

Differences in the Vibrational Dynamics of H(2)O and D(2)O: Observation of Symmetric and Antisymmetric Stretching Vibrations in Heavy Water.

artículo científico publicado en 2016

Direct Observation of Activated Kinetics and Downhill Dynamics in DNA Dehybridization.

artículo científico publicado en 2018

Direct Observation of Ion Pairing in Aqueous Nitric Acid Using 2D Infrared Spectroscopy

artículo científico publicado en 2018

Direct observation of ground-state lactam–lactim tautomerization using temperature-jump transient 2D IR spectroscopy ⬇️

artículo científico publicado el 20 de mayo de 2013

Direct observation of intermolecular interactions mediated by hydrogen bonding

artículo científico publicado en 2014

Direct observation of multiple tautomers of oxythiamine and their recognition by the thiamine pyrophosphate riboswitch

artículo científico publicado en 2013

Dispersion compensation with optical materials for compression of intense sub-100-fs mid-infrared pulses

scientific article published on 01 March 2002

Distinguishing gramicidin D conformers through two-dimensional infrared spectroscopy of vibrational excitons.

artículo científico publicado en 2015

Efficient Total Chemical Synthesis of (13) C=(18) O Isotopomers of Human Insulin for Isotope-Edited FTIR.

artículo científico publicado en 2015

Electric field fluctuations drive vibrational dephasing in water

artículo científico publicado en 2005

Electrostatic frequency shifts in amide I vibrational spectra: Direct parameterization against experiment ⬇️

artículo científico publicado el 7 de abril de 2013

Entropic barriers in the kinetics of aqueous proton transfer

scientific article published on 01 July 2019

Experimental Evidence of Fermi Resonances in Isotopically Dilute Water from Ultrafast Broadband IR Spectroscopy ⬇️

artículo científico publicado el 16 de mayo de 2013

Fluorescence-Encoded Infrared Spectroscopy: Ultrafast Vibrational Spectroscopy on Small Ensembles of Molecules in Solution

scientific article published on 09 April 2019

Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy.

artículo científico publicado en 2013

Fourier Transform Fluorescence-Encoded Infrared Spectroscopy.

artículo científico publicado en 2017

Heterodyne-detected dispersed vibrational echo spectroscopy

artículo científico publicado en 2009

High-Level VSCF/VCI Calculations Decode the Vibrational Spectrum of the Aqueous Proton

artículo científico publicado en 2019

Hydrogen bonds in liquid water are broken only fleetingly

artículo científico publicado en 2005

IR spectral assignments for the hydrated excess proton in liquid water.

artículo científico publicado en 2017

Identification of Lactam–Lactim Tautomers of Aromatic Heterocycles in Aqueous Solution Using 2D IR Spectroscopy ⬇️

artículo científico publicado el 24 de octubre de 2012

Identifying Residual Structure in Intrinsically Disordered Systems: A 2D IR Spectroscopic Study of the GVGXPGVG Peptide ⬇️

artículo científico publicado el 7 de marzo de 2012

Insulin Dissociates by Diverse Mechanisms of Coupled Unfolding and Unbinding

artículo científico publicado en 2020

Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy

artículo científico publicado en 2010

Interplay of Ion-Water and Water-Water Interactions within the Hydration Shells of Nitrate and Carbonate Directly Probed with 2D IR Spectroscopy

artículo científico publicado en 2016

Isotope-enriched protein standards for computational amide I spectroscopy

artículo científico publicado en 2015

Length-Dependent Melting Kinetics of Short DNA Oligonucleotides Using Temperature-Jump IR Spectroscopy

scientific article published on 22 January 2019

Local and collective reaction coordinates in the transport of the aqueous hydroxide ion

artículo científico publicado en 2014

Local hydrogen bonding dynamics and collective reorganization in water: ultrafast infrared spectroscopy of HOD/D(2)O

scientific article published on 01 February 2005

Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations.

artículo científico publicado en 2010

Molecular modeling and assignment of IR spectra of the hydrated excess proton in isotopically dilute water.

artículo científico publicado en 2016

Multidimensional infrared spectroscopy of water. I. Vibrational dynamics in two-dimensional IR line shapes

artículo científico publicado en 2006

Multidimensional infrared spectroscopy of water. II. Hydrogen bond switching dynamics

artículo científico publicado en 2006

Nanosecond time scale dynamics of pseudo-nematic domains in the isotropic phase of liquid crystals

Observation of a Zundel-like transition state during proton transfer in aqueous hydroxide solutions

artículo científico publicado en 2009

Obtaining absorptive line shapes in two-dimensional infrared vibrational correlation spectra

artículo científico publicado en 2003

Oxidized Derivatives of 5-Methylcytosine Alter the Stability and Dehybridization Dynamics of Duplex DNA

artículo científico publicado en 2020

Phonon-assisted exciton relaxation dynamics for a (6,5)-enriched DNA-wrapped single-walled carbon nanotube sample

article

Picosecond Proton Transfer Kinetics in Water Revealed with Ultrafast IR Spectroscopy.

artículo científico publicado en 2018

Picosecond infrared vibrational photon echoes in a liquid and glass using a free electron laser

artículo científico publicado en 1993

Polarizable molecules in the vibrational spectroscopy of water

artículo científico publicado en 2005

Preface: Special Topic on Biological Water

Probing Local Structural Events in β-Hairpin Unfolding with Transient Nonlinear Infrared Spectroscopy

artículo científico publicado en 2007

Probing the folding transition state of ubiquitin mutants by temperature-jump-induced downhill unfolding

artículo científico publicado en 2008

Proton transfer in concentrated aqueous hydroxide visualized using ultrafast infrared spectroscopy.

artículo científico publicado en 2011

Refinement of Peptide Conformational Ensembles by 2D IR Spectroscopy: Application to Ala‒Ala‒Ala

artículo científico publicado en 2018

Refining Disordered Peptide Ensembles with Computational Amide I Spectroscopy: Application to Elastin-Like Peptides

artículo científico publicado en 2016

Residual Native Structure in a Thermally Denatured β-Hairpin

scientific article published on 01 September 2005

Revealing the Dynamical Role of Co-Solvents in the Coupled Folding and Dimerization of Insulin

scientific article published on 13 May 2020

Robust excitons inhabit soft supramolecular nanotubes

artículo científico publicado en 2014

Role of Presolvation and Anharmonicity in Aqueous Phase Hydrated Proton Solvation and Transport

scientific article published on 01 December 2015

Role of water in electron-initiated processes and radical chemistry: issues and scientific advances

artículo científico publicado en 2005

Sequence-Dependent Mechanism of DNA Oligonucleotide Dehybridization Resolved through Infrared Spectroscopy

artículo científico publicado en 2016

Signatures of beta-sheet secondary structures in linear and two-dimensional infrared spectroscopy

artículo científico publicado en 2004

Single-shot two-dimensional infrared spectroscopy

artículo científico publicado en 2007

Single-shot two-dimensional spectrometer

artículo científico publicado en 2006

Single-stage MHz mid-IR OPA using LiGaSand a fiber laser pump source

artículo científico publicado en 2018

Solvent and conformation dependence of amide I vibrations in peptides and proteins containing proline

artículo científico publicado en 2011

Source for ultrafast continuum infrared and terahertz radiation

artículo científico publicado en 2010

Spectral signatures of heterogeneous protein ensembles revealed by MD Simulations of 2DIR spectra.

artículo científico publicado en 2006

Structural disorder of folded proteins: isotope-edited 2D IR spectroscopy and Markov state modeling

artículo científico publicado en 2015

Structural information from two-dimensional fifth-order Raman spectroscopy

Structural rearrangements in water viewed through two-dimensional infrared spectroscopy.

artículo científico publicado en 2009

Studying Protein-Protein Binding through T-Jump Induced Dissociation: Transient 2D IR Spectroscopy of Insulin Dimer.

artículo científico publicado en 2016

Tautomerism provides a molecular explanation for the mutagenic properties of the anti-HIV nucleoside 5-aza-5,6-dihydro-2'-deoxycytidine

artículo científico publicado en 2014

Temperature-Jump 2D IR Spectroscopy with Intensity-Modulated CW Optical Heating

artículo científico publicado en 2020

Temperature-dependent downhill unfolding of ubiquitin. I. Nanosecond-to-millisecond resolved nonlinear infrared spectroscopy

artículo científico publicado en 2008

Temperature-dependent downhill unfolding of ubiquitin. II. Modeling the free energy surface

artículo científico publicado en 2008

The Anharmonic Vibrational Potential and Relaxation Pathways of the Amide I and II Modes ofN-Methylacetamide†

article

The dynamics of peptide-water interactions in dialanine: An ultrafast amide I 2D IR and computational spectroscopy study.

artículo científico

Time-resolved measurements of an ion channel conformational change driven by a membrane phase transition.

artículo científico publicado en 2017

Transient 2D IR spectroscopy of ubiquitin unfolding dynamics

artículo científico publicado en 2007

Transient two-dimensional IR spectrometer for probing nanosecond temperature-jump kinetics

artículo científico publicado en 2007

Transient two-dimensional spectroscopy with linear absorption corrections applied to temperature-jump two-dimensional infrared

article

Two-Photon-Excited Fluorescence-Encoded Infrared Spectroscopy

artículo científico publicado en 2016

Two-dimensional Fourier transform spectroscopy in the pump-probe geometry

artículo científico publicado en 2007

Two-dimensional IR spectroscopy of the anti-HIV agent KP1212 reveals protonated and neutral tautomers that influence pH-dependent mutagenicity

artículo científico publicado en 2015

Two-dimensional infrared spectroscopy of antiparallel beta-sheet secondary structure

artículo científico publicado en 2004

Two-dimensional line-shape analysis of photon-echo signal

article

Ultrafast 2D IR anisotropy of water reveals reorientation during hydrogen-bond switching

artículo científico publicado en 2011

Ultrafast 2D IR microscopy

artículo científico publicado en 2014

Ultrafast 2D IR spectroscopy of the excess proton in liquid water

artículo científico publicado en 2015

Ultrafast Fluctuations of High Amplitude Electric Fields in Lipid Membranes.

artículo científico publicado en 2017

Ultrafast Hydrogen-Bond Dynamics in the Infrared Spectroscopy of Water ⬇️

artículo científico publicado el 19 de septiembre de 2003

Ultrafast N-H vibrational dynamics of cyclic doubly hydrogen-bonded homo- and heterodimers.

artículo científico publicado en 2008

Upconversion multichannel infrared spectrometer

scientific article published on 01 July 2005

Vibrational Probe of Aqueous Electrolytes - The Field is Not Enough

artículo científico publicado en 2020

Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction

artículo científico publicado en 2020

Vibrational anharmonicities revealed by coherent two-dimensional infrared spectroscopy

artículo científico publicado en 2001

Vibrational coherence transfer characterized with Fourier-transform 2D IR spectroscopy

artículo científico publicado en 2004

Vibrational dynamics of aqueous hydroxide solutions probed using broadband 2DIR spectroscopy

artículo científico publicado en 2015

Vibrational excitons in ionophores: experimental probes for quantum coherence-assisted ion transport and selectivity in ion channels

artículo científico publicado en 2011

Visualization and characterization of the infrared active amide I vibrations of proteins

scientific article published on 01 February 2006

Visualizing KcsA conformational changes upon ion binding by infrared spectroscopy and atomistic modeling

artículo científico publicado en 2015

Water penetration into protein secondary structure revealed by hydrogen-deuterium exchange two-dimensional infrared spectroscopy.

artículo científico publicado en 2006

Water vibrations have strongly mixed intra- and intermolecular character

artículo científico publicado en 2013

Weakened N3 Hydrogen Bonding by 5-Formylcytosine and 5-Carboxylcytosine Reduces Their Base-Pairing Stability

artículo científico publicado en 2015

Lista de obras de Andrei Tokmakoff

5-Carboxylcytosine and Cytosine Protonation Distinctly Alter the Stability and Dehybridization Dynamics of the DNA Duplex

A lattice model for the interpretation of oligonucleotide hybridization experiments

A molecular interpretation of 2D IR protein folding experiments with Markov state models

A phenomenological approach to modeling chemical dynamics in nonlinear and two-dimensional spectroscopy ⬇️

Amide I Two-Dimensional Infrared Spectroscopy: Methods for Visualizing the Vibrational Structure of Large Proteins ⬇️

Amide I two-dimensional infrared spectroscopy of proteins

Amide I two-dimensional infrared spectroscopy of β-hairpin peptides

Amide I vibrational dynamics of N-methylacetamide in polar solvents: the role of electrostatic interactions

Amide I'-II' 2D IR spectroscopy provides enhanced protein secondary structural sensitivity

Anharmonic Vibrational Modes of Nucleic Acid Bases Revealed by 2D IR Spectroscopy

Anharmonic exciton dynamics and energy dissipation in liquid water from two-dimensional infrared spectroscopy

Broadband 2D IR spectroscopy reveals dominant asymmetric H5O2+ proton hydration structures in acid solutions

Characterization of spectral diffusion from two-dimensional line shapes

Chemistry. Shining light on the rapidly evolving structure of water

Coherent two-dimensional infrared spectroscopy: quantitative analysis of protein secondary structure in solution.

Collective Hydrogen Bond Reorganization in Water Studied with Temperature-Dependent Ultrafast Infrared Spectroscopy ⬇️

Collective vibrations of water-solvated hydroxide ions investigated with broadband 2DIR spectroscopy

Communication: Quantitative multi-site frequency maps for amide I vibrational spectroscopy.

Computational Amide I 2D IR Spectroscopy as a Probe of Protein Structure and Dynamics.

Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin.

Cooperative cold denaturation: the case of the C-terminal domain of ribosomal protein L9.

Correction to "Length-Dependent Melting Kinetics of Short DNA Oligonucleotides Using Temperature-Jump IR Spectroscopy"

Correction: Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy

Correlated vibrational dynamics revealed by two-dimensional infrared spectroscopy

Crossover from hydrogen to chemical bonding

Crystallization of Enantiomerically Pure Proteins from Quasi-Racemic Mixtures: Structure Determination by X-Ray Diffraction of Isotope-Labeled Ester Insulin and Human Insulin

DNA minor-groove binder Hoechst 33258 destabilizes base-pairing adjacent to its binding site

Decoding the 2D IR spectrum of the aqueous proton with high-level VSCF/VCI calculations

Delocalization and stretch-bend mixing of the HOH bend in liquid water.

Determining Sequence-Dependent DNA Oligonucleotide Hybridization and Dehybridization Mechanisms Using Coarse-Grained Molecular Simulation, Markov State Models, and Infrared Spectroscopy

Differences in the Vibrational Dynamics of H(2)O and D(2)O: Observation of Symmetric and Antisymmetric Stretching Vibrations in Heavy Water.

Direct Observation of Activated Kinetics and Downhill Dynamics in DNA Dehybridization.

Direct Observation of Ion Pairing in Aqueous Nitric Acid Using 2D Infrared Spectroscopy

Direct observation of ground-state lactam–lactim tautomerization using temperature-jump transient 2D IR spectroscopy ⬇️

Direct observation of intermolecular interactions mediated by hydrogen bonding

Direct observation of multiple tautomers of oxythiamine and their recognition by the thiamine pyrophosphate riboswitch

Dispersion compensation with optical materials for compression of intense sub-100-fs mid-infrared pulses

Distinguishing gramicidin D conformers through two-dimensional infrared spectroscopy of vibrational excitons.

Efficient Total Chemical Synthesis of (13) C=(18) O Isotopomers of Human Insulin for Isotope-Edited FTIR.

Electric field fluctuations drive vibrational dephasing in water

Electrostatic frequency shifts in amide I vibrational spectra: Direct parameterization against experiment ⬇️

Entropic barriers in the kinetics of aqueous proton transfer

Experimental Evidence of Fermi Resonances in Isotopically Dilute Water from Ultrafast Broadband IR Spectroscopy ⬇️

Fluorescence-Encoded Infrared Spectroscopy: Ultrafast Vibrational Spectroscopy on Small Ensembles of Molecules in Solution

Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy.

Fourier Transform Fluorescence-Encoded Infrared Spectroscopy.

Heterodyne-detected dispersed vibrational echo spectroscopy

High-Level VSCF/VCI Calculations Decode the Vibrational Spectrum of the Aqueous Proton

Hydrogen bonds in liquid water are broken only fleetingly

IR spectral assignments for the hydrated excess proton in liquid water.

Identification of Lactam–Lactim Tautomers of Aromatic Heterocycles in Aqueous Solution Using 2D IR Spectroscopy ⬇️

Identifying Residual Structure in Intrinsically Disordered Systems: A 2D IR Spectroscopic Study of the GVGXPGVG Peptide ⬇️

Insulin Dissociates by Diverse Mechanisms of Coupled Unfolding and Unbinding

Insulin dimer dissociation and unfolding revealed by amide I two-dimensional infrared spectroscopy

Interplay of Ion-Water and Water-Water Interactions within the Hydration Shells of Nitrate and Carbonate Directly Probed with 2D IR Spectroscopy

Isotope-enriched protein standards for computational amide I spectroscopy

Length-Dependent Melting Kinetics of Short DNA Oligonucleotides Using Temperature-Jump IR Spectroscopy

Local and collective reaction coordinates in the transport of the aqueous hydroxide ion

Local hydrogen bonding dynamics and collective reorganization in water: ultrafast infrared spectroscopy of HOD/D(2)O

Melting of a beta-hairpin peptide using isotope-edited 2D IR spectroscopy and simulations.

Molecular modeling and assignment of IR spectra of the hydrated excess proton in isotopically dilute water.

Multidimensional infrared spectroscopy of water. I. Vibrational dynamics in two-dimensional IR line shapes

Multidimensional infrared spectroscopy of water. II. Hydrogen bond switching dynamics

Nanosecond time scale dynamics of pseudo-nematic domains in the isotropic phase of liquid crystals

Observation of a Zundel-like transition state during proton transfer in aqueous hydroxide solutions

Obtaining absorptive line shapes in two-dimensional infrared vibrational correlation spectra

Oxidized Derivatives of 5-Methylcytosine Alter the Stability and Dehybridization Dynamics of Duplex DNA

Phonon-assisted exciton relaxation dynamics for a (6,5)-enriched DNA-wrapped single-walled carbon nanotube sample

Picosecond Proton Transfer Kinetics in Water Revealed with Ultrafast IR Spectroscopy.

Picosecond infrared vibrational photon echoes in a liquid and glass using a free electron laser

Polarizable molecules in the vibrational spectroscopy of water

Preface: Special Topic on Biological Water

Probing Local Structural Events in β-Hairpin Unfolding with Transient Nonlinear Infrared Spectroscopy

Probing the folding transition state of ubiquitin mutants by temperature-jump-induced downhill unfolding

Proton transfer in concentrated aqueous hydroxide visualized using ultrafast infrared spectroscopy.

Refinement of Peptide Conformational Ensembles by 2D IR Spectroscopy: Application to Ala‒Ala‒Ala

Refining Disordered Peptide Ensembles with Computational Amide I Spectroscopy: Application to Elastin-Like Peptides

Residual Native Structure in a Thermally Denatured β-Hairpin

Revealing the Dynamical Role of Co-Solvents in the Coupled Folding and Dimerization of Insulin