Lista de obras - Florentino Fdez-Riverola

@Note: a workbench for biomedical text mining

artículo científico

A distributed multiagent system architecture for body area networks applied to healthcare monitoring.

artículo científico publicado en 2015

A mesofluidic platform integrating on-chip probe ultrasonication for multiple sample pretreatment involving denaturation, reduction, and digestion in protein identification assays by mass spectrometry

artículo científico publicado en 2014

A methodological approach based on gold-nanoparticles followed by matrix assisted laser desorption ionization time of flight mass spectrometry for the analysis of urine profiling of knee osteoarthritis

artículo científico publicado en 2015

A mobile Virtual Butler to bridge the gap between users and ambient assisted living: a Smart Home case study

artículo científico publicado en 2014

A new approach to bacterial colony morphotyping by matrix-assisted laser desorption ionization time of flight-based mass spectrometry

artículo científico publicado en 2013

A novel (18)O inverse labeling-based workflow for accurate bottom-up mass spectrometry quantification of proteins separated by gel electrophoresis

artículo científico publicado en 2010

A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets.

artículo científico publicado en 2012

A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis

artículo científico publicado en 2016

A ubiquitous and low-cost solution for movement monitoring and accident detection based on sensor fusion.

artículo científico publicado en 2014

ADOPS--Automatic Detection Of Positively Selected Sites

artículo científico publicado en 2012

AIBench: a rapid application development framework for translational research in biomedicine

artículo científico publicado en 2010

ALTER: program-oriented conversion of DNA and protein alignments

artículo científico publicado en 2010

ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms

artículo científico publicado en 2019

Active and Assisted Living Ecosystem for the Elderly.

artículo científico publicado en 2018

Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework.

artículo científico publicado en 2015

Alnus Airborne Pollen Trends during the Last 26 Years for Improving Machine Learning-Based Forecasting Methods

artículo científico publicado en 2023

Analysis of student's context in e-Learning

artículo científico publicado en 2014

Análisis del comportamiento en entornos de e-learning

artículo científico publicado en 2015

Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli

artículo científico publicado en 2019

Approach for Unveiling the Glycoside Hydrolase Activities in Through a Systematic and Integrative Large-Scale Analysis

scientific article published on 04 April 2019

BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus

scientific article published on 02 February 2019

BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines

artículo científico

BioAnnote: a software platform for annotating biomedical documents with application in medical learning environments.

artículo científico publicado en 2013

BioDR: Semantic indexing networks for biomedical document retrieval

BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

scientific article published in PLoS ONE

Boosting Learning: Non-intrusive Monitoring of Student’s Efficiency

artículo científico publicado en 2015

Classifying patients in peritoneal dialysis by mass spectrometry-based profiling

artículo científico publicado en 2016

Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow.

scientific article published on 26 December 2016

DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research

artículo científico publicado en 2019

DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data

artículo científico publicado en 2009

Decision peptide-driven: a free software tool for accurate protein quantification using gel electrophoresis and matrix assisted laser desorption ionization time of flight mass spectrometry.

artículo científico publicado en 2010

Direct matrix assisted laser desorption ionization mass spectrometry-based analysis of wine as a powerful tool for classification purposes

artículo científico publicado en 2012

Enabling systematic, harmonised and large-scale biofilms data computation: the Biofilms Experiment Workbench.

artículo científico publicado en 2015

Evaluating the effect of unbalanced data in biomedical document classification.

artículo científico publicado en 2011

EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases

scientific article published on 01 February 2019

Fast human serum profiling through chemical depletion coupled to gold-nanoparticle-assisted protein separation

artículo científico publicado en 2012

From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides.

artículo científico publicado en 2016

GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components

artículo científico publicado en 2018

Gold Standard Evaluation of an Automatic HAIs Surveillance System

artículo científico publicado en 2019

High performance computing for three-dimensional agent-based molecular models

artículo científico publicado en 2016

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

artículo científico publicado en 2016

In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria

artículo científico publicado en 2017

In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota

scientific article published on 30 January 2019

Indirect ultrasonication for protein quantification and peptide mass mapping through mass spectrometry-based techniques

Keystrokes and Clicks: Measuring Stress on E-learning Students

artículo científico publicado en 2013

LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data

artículo científico publicado en 2016

MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota

scientific article published on 10 January 2017

Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects

artículo científico publicado en 2014

Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery.

artículo científico publicado en 2015

Multiple independent L-gulonolactone oxidase (GULO) gene losses and vitamin C synthesis reacquisition events in non-Deuterostomian animal species.

artículo científico publicado en 2019

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm

scientific article published on 24 June 2019

P4P: a peptidome-based strain-level genome comparison web tool

artículo científico publicado en 2017

PathJam: a new service for integrating biological pathway information

scientific article published on 28 October 2010

Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model

artículo científico publicado en 2013

PileLine: a toolbox to handle genome position information in next-generation sequencing studies ⬇️

artículo científico publicado el 24 de enero de 2011

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies ⬇️

artículo científico publicado el 6 de junio de 2011

Predicting Specificities Under the Non-self Gametophytic Self-Incompatibility Recognition Model

artículo científico publicado en 2019

RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data

artículo científico publicado en 2016

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data

Rapid development of Proteomic applications with the AIBench framework

artículo científico publicado el 15 de septiembre de 2011

Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a Glycoside Hydrolase Perspective

artículo científico publicado en 2020

S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data.

artículo científico publicado en 2017

Sequential depletion coupled to C18 sequential extraction as a rapid tool for human serum multiple profiling.

artículo científico publicado en 2014

Speeding up the screening of steroids in urine: development of a user-friendly library.

artículo científico publicado en 2013

The Drosophila melanogaster methuselah gene: a novel gene with ancient functions

artículo científico publicado en 2013

The Evolving Role of Information Technology in Haemovigilance Systems.

artículo científico publicado en 2018

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge

artículo científico publicado en 2016

Unobstructive Body Area Networks (BAN) for efficient movement monitoring.

artículo científico publicado en 2012

Using Twitter to Understand the Human Bowel Disease Community: Exploratory Analysis of Key Topics

scientific article published on 15 August 2019

Using variable precision rough set for selection and classification of biological knowledge integrated in DNA gene expression.

artículo científico publicado en 2012

WARCProcessor: An Integrative Tool for Building and Management of Web Spam Corpora.

artículo científico publicado en 2017

Web scraping technologies in an API world ⬇️

artículo científico publicado el 30 de abril de 2013

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis

artículo científico publicado en 2009

geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research.

artículo científico publicado en 2009

geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification

artículo científico publicado en 2014

Lista de obras de Florentino Fdez-Riverola

@Note: a workbench for biomedical text mining

A distributed multiagent system architecture for body area networks applied to healthcare monitoring.

A mesofluidic platform integrating on-chip probe ultrasonication for multiple sample pretreatment involving denaturation, reduction, and digestion in protein identification assays by mass spectrometry

A methodological approach based on gold-nanoparticles followed by matrix assisted laser desorption ionization time of flight mass spectrometry for the analysis of urine profiling of knee osteoarthritis

A mobile Virtual Butler to bridge the gap between users and ambient assisted living: a Smart Home case study

A new approach to bacterial colony morphotyping by matrix-assisted laser desorption ionization time of flight-based mass spectrometry

A novel (18)O inverse labeling-based workflow for accurate bottom-up mass spectrometry quantification of proteins separated by gel electrophoresis

A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets.

A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis

A ubiquitous and low-cost solution for movement monitoring and accident detection based on sensor fusion.

ADOPS--Automatic Detection Of Positively Selected Sites

AIBench: a rapid application development framework for translational research in biomedicine

ALTER: program-oriented conversion of DNA and protein alignments

ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms

Active and Assisted Living Ecosystem for the Elderly.

Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework.

Alnus Airborne Pollen Trends during the Last 26 Years for Improving Machine Learning-Based Forecasting Methods

Analysis of student's context in e-Learning

Análisis del comportamiento en entornos de e-learning

Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli

Approach for Unveiling the Glycoside Hydrolase Activities in Through a Systematic and Integrative Large-Scale Analysis

BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus

BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines

BioAnnote: a software platform for annotating biomedical documents with application in medical learning environments.

BioDR: Semantic indexing networks for biomedical document retrieval

BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

Boosting Learning: Non-intrusive Monitoring of Student’s Efficiency

Classifying patients in peritoneal dialysis by mass spectrometry-based profiling

Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow.

DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research

DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data

Decision peptide-driven: a free software tool for accurate protein quantification using gel electrophoresis and matrix assisted laser desorption ionization time of flight mass spectrometry.

Direct matrix assisted laser desorption ionization mass spectrometry-based analysis of wine as a powerful tool for classification purposes

Enabling systematic, harmonised and large-scale biofilms data computation: the Biofilms Experiment Workbench.

Evaluating the effect of unbalanced data in biomedical document classification.

EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases

Fast human serum profiling through chemical depletion coupled to gold-nanoparticle-assisted protein separation

From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides.

GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components

Gold Standard Evaluation of an Automatic HAIs Surveillance System

High performance computing for three-dimensional agent-based molecular models

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria

In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota

Indirect ultrasonication for protein quantification and peptide mass mapping through mass spectrometry-based techniques

Keystrokes and Clicks: Measuring Stress on E-learning Students

LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data

MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota

Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects

Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery.

Multiple independent L-gulonolactone oxidase (GULO) gene losses and vitamin C synthesis reacquisition events in non-Deuterostomian animal species.

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm

P4P: a peptidome-based strain-level genome comparison web tool

PathJam: a new service for integrating biological pathway information

Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model

PileLine: a toolbox to handle genome position information in next-generation sequencing studies ⬇️

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies ⬇️

Predicting Specificities Under the Non-self Gametophytic Self-Incompatibility Recognition Model

RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data

Rapid development of Proteomic applications with the AIBench framework

Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a Glycoside Hydrolase Perspective

S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data.

Sequential depletion coupled to C18 sequential extraction as a rapid tool for human serum multiple profiling.

Speeding up the screening of steroids in urine: development of a user-friendly library.

The Drosophila melanogaster methuselah gene: a novel gene with ancient functions

The Evolving Role of Information Technology in Haemovigilance Systems.

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge

Unobstructive Body Area Networks (BAN) for efficient movement monitoring.

Using Twitter to Understand the Human Bowel Disease Community: Exploratory Analysis of Key Topics

Using variable precision rough set for selection and classification of biological knowledge integrated in DNA gene expression.

WARCProcessor: An Integrative Tool for Building and Management of Web Spam Corpora.

Web scraping technologies in an API world ⬇️

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis

geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research.

geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification