Lista de obras - Esmaeil Ebrahimie - Dominio Público Uruguay

A comparative system-level analysis of the neurodegenerative diseases

artículo científico publicado en 2018

A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease.

artículo científico publicado en 2014

A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery.

artículo científico publicado en 2017

A large-scale study of indicators of sub-clinical mastitis in dairy cattle by attribute weighting analysis of milk composition features: highlighting the predictive power of lactose and electrical conductivity

artículo científico publicado en 2018

A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data

artículo científico publicado en 2017

A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: application to Arabidopsis.

artículo científico publicado en 2014

A transcription factor contributes to pathogenesis and virulence in Streptococcus pneumoniae

artículo científico publicado en 2013

Alzheimer's disease-related peptide PS2V plays ancient, conserved roles in suppression of the unfolded protein response under hypoxia and stimulation of γ-secretase activity.

artículo científico publicado en 2015

Amino Acid Features of P1B-ATPase Heavy Metal Transporters Enabling Small Numbers of Organisms to Cope with Heavy Metal Pollution

artículo científico publicado en 2011

Analysis of nicastrin gene phylogeny and expression in zebrafish.

artículo científico publicado en 2015

Application of functional genomic information to develop efficient EST-SSRs for the chicken (Gallus gallus)

artículo científico publicado en 2012

Characterization of Pneumococcal Genes Involved in Bloodstream Invasion in a Mouse Model ⬇️

artículo científico publicado en 2015

Combined direct regeneration protocols in tissue culture of different cumin genotypes based on pre-existing meristems

artículo científico publicado en 2007

Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis.

artículo científico publicado en 2013

Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria

artículo científico publicado en 2013

Comparison of hematopoietic cancer stem cells with normal stem cells leads to discovery of novel differentially expressed SSRs.

artículo científico publicado en 2014

Comprehensive analysis of machine learning models for prediction of sub-clinical mastitis: Deep Learning and Gradient-Boosted Trees outperform other models

scientific article published on 18 September 2019

Computational Systems Biology Approach Predicts Regulators and Targets of microRNAs and Their Genomic Hotspots in Apoptosis Process

artículo científico publicado en 2016

Computational systems biology analysis of biomarkers in lung cancer; unravelling genomic regions which frequently encode biomarkers, enriched pathways, and new candidates

artículo científico publicado en 2018

Correction to: Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis.

artículo científico publicado en 2017

Correction: Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria

artículo científico publicado en 2015

Cross-Species Meta-Analysis of Transcriptomic Data in Combination With Supervised Machine Learning Models Identifies the Common Gene Signature of Lactation Process

artículo científico publicado en 2018

De novo transcriptome assembly and comparative analysis of differentially expressed genes in Prunus dulcis Mill. in response to freezing stress

artículo científico publicado en 2014

Determining the most important physiological and agronomic traits contributing to maize grain yield through machine learning algorithms: a new avenue in intelligent agriculture.

artículo científico publicado en 2014

Development of an improved Streptococcus uberis experimental mastitis challenge model using different doses and strains in lactating dairy cows

artículo científico publicado en 2015

Differential expression of TLP, ERF1, and R2R3MYB in annual Medicago species under salinity conditions

artículo científico publicado en 2015

Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus

artículo científico

Differentiation of P19 embryonal carcinoma stem cells into insulin-producing cells promoted by pancreas-conditioned medium

artículo científico publicado en 2014

Discovery of EST-SSRs in lung cancer: tagged ESTs with SSRs lead to differential amino acid and protein expression patterns in cancerous tissues

artículo científico publicado en 2011

DrugMiner: comparative analysis of machine learning algorithms for prediction of potential druggable proteins.

artículo científico publicado en 2016

Enhancement of anticancer activity by silibinin and paclitaxel combination on the ovarian cancer

artículo científico publicado en 2017

Epitope Mapping of Avian Influenza M2e Protein: Different Species Recognise Various Epitopes

artículo científico publicado en 2016

Expression analyses of salinity stress- associated ESTs in Aeluropus littoralis.

artículo científico publicado en 2017

Field effectiveness of highly pathogenic avian influenza H5N1 vaccination in commercial layers in Indonesia

artículo científico publicado en 2018

Finding the undiscovered roles of genes: an approach using mutual ranking of coexpressed genes and promoter architecture-case study: dual roles of thaumatin like proteins in biotic and abiotic stresses.

artículo científico publicado en 2012

Functional Analysis of a Pomegranate (Punica granatum L.) MYB Transcription Factor Involved in the Regulation of Anthocyanin Biosynthesis

artículo científico publicado en 2015

Gene Ontology-Based Analysis of Zebrafish Omics Data Using the Web Tool Comparative Gene Ontology.

artículo científico publicado en 2017

Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil

artículo científico publicado en 2018

Genome-wide analysis of alternative splicing events in Hordeum vulgare: Highlighting retention of intron-based splicing and its possible function through network analysis.

artículo científico

Genome-wide survey of Alternative Splicing in Sorghum Bicolor.

artículo científico publicado en 2014

Genomic analysis reveals variant association with high altitude adaptation in native chickens

scientific article published on 25 June 2019

Gibberellin causes wide transcriptional modifications in the early stage of grape cluster development

artículo científico publicado en 2019

How the nucleus and mitochondria communicate in energy production during stress: nuclear MtATP6, an early-stress responsive gene, regulates the mitochondrial F₁F₀-ATP synthase complex.

artículo científico publicado en 2013

Identification of the key regulating genes of diminished ovarian reserve (DOR) by network and gene ontology analysis

artículo científico

Identifying mutation positions in all segments of influenza genome enables better differentiation between pandemic and seasonal strains

scientific article published on 12 February 2019

In vitro comparison of the dermal penetration of three different topical formulations containing lasalocid.

artículo científico publicado en 2017

Induction of pancreatic β cell gene expression in mesenchymal stem cells.

artículo científico publicado en 2015

Integration of machine learning and meta-analysis identifies the transcriptomic bio-signature of mastitis disease in cattle.

artículo científico publicado en 2018

Integrative meta-analysis of transcriptomic responses to abiotic stress in cotton

article

Interaction between Bovine leukemia virus (BLV) infection and age on telomerase misregulation

artículo científico publicado en 2015

Isolation and in silico functional analysis of MtATP6, a 6-kDa subunit of mitochondrial F₁F0-ATP synthase, in response to abiotic stress.

artículo científico publicado en 2012

Knowledge discovery and sequence-based prediction of pandemic influenza using an integrated classification and association rule mining (CBA) algorithm.

artículo científico publicado en 2015

Machine Learning Based Classification of Microsatellite Variation: An Effective Approach for Phylogeographic Characterization of Olive Populations

artículo científico publicado en 2015

MicroRNA-194 Promotes Prostate Cancer Metastasis by Inhibiting SOCS2.

artículo científico publicado en 2016

Minimizing the cost of translocation failure with decision-tree models that predict species' behavioral response in translocation sites

artículo científico publicado en 2015

Mining expressed sequence tags of rapeseed (Brassica napus L.) to predict the drought responsive regulatory network.

artículo científico publicado en 2015

Molecular characterization of Brassica napus stress related transcription factors, BnMYB44 and BnVIP1, selected based on comparative analysis of Arabidopsis thaliana and Eutrema salsugineum transcriptomes

artículo científico publicado en 2018

Multimeric recombinant M2e protein-based ELISA: a significant improvement in differentiating avian influenza infected chickens from vaccinated ones.

artículo científico publicado en 2014

Network analysis of inflammatory responses to sepsis by neutrophils and peripheral blood mononuclear cells

artículo científico publicado en 2018

Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology.

artículo científico publicado en 2014

New Opportunities for Targeting the Androgen Receptor in Prostate Cancer.

artículo científico publicado en 2018

New insights into the expression profile of MicroRNA-34c and P53 in infertile men spermatozoa and testicular tissue.

artículo científico publicado en 2017

New layers in understanding and predicting α-linolenic acid content in plants using amino acid characteristics of omega-3 fatty acid desaturase.

artículo científico publicado en 2014

Non-coding and coding genomic variants distinguish prostate cancer, castration-resistant prostate cancer, familial prostate cancer, and metastatic castration-resistant prostate cancer from each other

artículo científico publicado en 2019

Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments

artículo científico publicado en 2016

Oxalate-degrading bacteria, including Oxalobacter formigenes, colonise the gastrointestinal tract of healthy koalas (Phascolarctos cinereus) and those with oxalate nephrosis

scientific article published on 01 May 2019

Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.

artículo científico

Prediction of key regulators and downstream targets of E. coli induced mastitis

scientific article published on 11 June 2019

Prediction of potential cancer-risk regions based on transcriptome data: towards a comprehensive view

artículo científico publicado en 2014

Prediction of thermostability from amino acid attributes by combination of clustering with attribute weighting: a new vista in engineering enzymes.

artículo científico publicado en 2011

Protein attributes contribute to halo-stability, bioinformatics approach.

artículo científico publicado en 2011

Protein interaction network of Arabidopsis thaliana female gametophyte development identifies novel proteins and relations

artículo científico publicado en 2012

Recombinant M2e protein-based ELISA: a novel and inexpensive approach for differentiating avian influenza infected chickens from vaccinated ones

artículo científico publicado en 2013

Root and shoot parts of strawberry: factories for production of functional human pro-insulin

scientific article published on 18 November 2014

SpliceDetector: a software for detection of alternative splicing events in human and model organisms directly from transcript IDs.

artículo científico publicado en 2018

The Inhibitory Effect of Ginger Extract on Ovarian Cancer Cell Line; Application of Systems Biology

artículo científico publicado en 2017

The Magnitude of Androgen Receptor Positivity in Breast Cancer Is Critical for Reliable Prediction of Disease Outcome.

artículo científico publicado en 2018

The Zebrafish Equivalent of Alzheimer's Disease-Associated PRESENILIN Isoform PS2V Regulates Inflammatory and Other Responses to Hypoxic Stress.

artículo científico publicado en 2016

The combined effects of three-dimensional cell culture and natural tissue extract on neural differentiation of P19 embryonal carcinoma stem cells

scientific article published on 13 August 2018

Tissue-specific transcriptional biomarkers in medicinal plants: Application of large-scale meta-analysis and computational systems biology

artículo científico publicado en 2019

Transcriptome Analysis of Breast Muscle Reveals Pathways Related to Protein Deposition in High Feed Efficiency of Native Turkeys

artículo científico publicado en 2022

Understanding the undelaying mechanism of HA-subtyping in the level of physic-chemical characteristics of protein

artículo científico publicado en 2014

Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of by Integration of Machine Learning, Promoter Analysis, and Direct Merging Meta-Analysis

artículo científico publicado en 2018

Unique ability of pandemic influenza to downregulate the genes involved in neuronal disorders.

artículo científico publicado en 2015

Unraveling the transcriptional complexity of compactness in sistan grape cluster.

artículo científico publicado en 2018

Unravelling evolution of Nanog, the key transcription factor involved in self-renewal of undifferentiated embryonic stem cells, by pattern recognition in nucleotide and tandem repeats characteristics

artículo científico publicado en 2015

Using the zebrafish model for Alzheimer's disease research

artículo científico publicado en 2014

Lista de obras de Esmaeil Ebrahimie

A comparative system-level analysis of the neurodegenerative diseases

A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease.

A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery.

A large-scale study of indicators of sub-clinical mastitis in dairy cattle by attribute weighting analysis of milk composition features: highlighting the predictive power of lactose and electrical conductivity

A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data

A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: application to Arabidopsis.

A transcription factor contributes to pathogenesis and virulence in Streptococcus pneumoniae

Alzheimer's disease-related peptide PS2V plays ancient, conserved roles in suppression of the unfolded protein response under hypoxia and stimulation of γ-secretase activity.

Amino Acid Features of P1B-ATPase Heavy Metal Transporters Enabling Small Numbers of Organisms to Cope with Heavy Metal Pollution

Analysis of nicastrin gene phylogeny and expression in zebrafish.

Application of functional genomic information to develop efficient EST-SSRs for the chicken (Gallus gallus)

Characterization of Pneumococcal Genes Involved in Bloodstream Invasion in a Mouse Model ⬇️

Combined direct regeneration protocols in tissue culture of different cumin genotypes based on pre-existing meristems

Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis.

Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria

Comparison of hematopoietic cancer stem cells with normal stem cells leads to discovery of novel differentially expressed SSRs.

Comprehensive analysis of machine learning models for prediction of sub-clinical mastitis: Deep Learning and Gradient-Boosted Trees outperform other models

Computational Systems Biology Approach Predicts Regulators and Targets of microRNAs and Their Genomic Hotspots in Apoptosis Process

Computational systems biology analysis of biomarkers in lung cancer; unravelling genomic regions which frequently encode biomarkers, enriched pathways, and new candidates

Correction to: Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis.

Correction: Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria

Cross-Species Meta-Analysis of Transcriptomic Data in Combination With Supervised Machine Learning Models Identifies the Common Gene Signature of Lactation Process

De novo transcriptome assembly and comparative analysis of differentially expressed genes in Prunus dulcis Mill. in response to freezing stress

Determining the most important physiological and agronomic traits contributing to maize grain yield through machine learning algorithms: a new avenue in intelligent agriculture.

Development of an improved Streptococcus uberis experimental mastitis challenge model using different doses and strains in lactating dairy cows

Differential expression of TLP, ERF1, and R2R3MYB in annual Medicago species under salinity conditions

Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus

Differentiation of P19 embryonal carcinoma stem cells into insulin-producing cells promoted by pancreas-conditioned medium

Discovery of EST-SSRs in lung cancer: tagged ESTs with SSRs lead to differential amino acid and protein expression patterns in cancerous tissues

DrugMiner: comparative analysis of machine learning algorithms for prediction of potential druggable proteins.

Enhancement of anticancer activity by silibinin and paclitaxel combination on the ovarian cancer

Epitope Mapping of Avian Influenza M2e Protein: Different Species Recognise Various Epitopes

Expression analyses of salinity stress- associated ESTs in Aeluropus littoralis.

Field effectiveness of highly pathogenic avian influenza H5N1 vaccination in commercial layers in Indonesia

Finding the undiscovered roles of genes: an approach using mutual ranking of coexpressed genes and promoter architecture-case study: dual roles of thaumatin like proteins in biotic and abiotic stresses.

Functional Analysis of a Pomegranate (Punica granatum L.) MYB Transcription Factor Involved in the Regulation of Anthocyanin Biosynthesis

Gene Ontology-Based Analysis of Zebrafish Omics Data Using the Web Tool Comparative Gene Ontology.

Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil

Genome-wide analysis of alternative splicing events in Hordeum vulgare: Highlighting retention of intron-based splicing and its possible function through network analysis.

Genome-wide survey of Alternative Splicing in Sorghum Bicolor.

Genomic analysis reveals variant association with high altitude adaptation in native chickens

Gibberellin causes wide transcriptional modifications in the early stage of grape cluster development

How the nucleus and mitochondria communicate in energy production during stress: nuclear MtATP6, an early-stress responsive gene, regulates the mitochondrial F₁F₀-ATP synthase complex.

Identification of the key regulating genes of diminished ovarian reserve (DOR) by network and gene ontology analysis

Identifying mutation positions in all segments of influenza genome enables better differentiation between pandemic and seasonal strains

In vitro comparison of the dermal penetration of three different topical formulations containing lasalocid.

Induction of pancreatic β cell gene expression in mesenchymal stem cells.

Integration of machine learning and meta-analysis identifies the transcriptomic bio-signature of mastitis disease in cattle.

Integrative meta-analysis of transcriptomic responses to abiotic stress in cotton

Interaction between Bovine leukemia virus (BLV) infection and age on telomerase misregulation

Isolation and in silico functional analysis of MtATP6, a 6-kDa subunit of mitochondrial F₁F0-ATP synthase, in response to abiotic stress.

Knowledge discovery and sequence-based prediction of pandemic influenza using an integrated classification and association rule mining (CBA) algorithm.

Machine Learning Based Classification of Microsatellite Variation: An Effective Approach for Phylogeographic Characterization of Olive Populations

MicroRNA-194 Promotes Prostate Cancer Metastasis by Inhibiting SOCS2.

Minimizing the cost of translocation failure with decision-tree models that predict species' behavioral response in translocation sites

Mining expressed sequence tags of rapeseed (Brassica napus L.) to predict the drought responsive regulatory network.

Molecular characterization of Brassica napus stress related transcription factors, BnMYB44 and BnVIP1, selected based on comparative analysis of Arabidopsis thaliana and Eutrema salsugineum transcriptomes

Multimeric recombinant M2e protein-based ELISA: a significant improvement in differentiating avian influenza infected chickens from vaccinated ones.

Network analysis of inflammatory responses to sepsis by neutrophils and peripheral blood mononuclear cells

Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology.

New Opportunities for Targeting the Androgen Receptor in Prostate Cancer.

New insights into the expression profile of MicroRNA-34c and P53 in infertile men spermatozoa and testicular tissue.

New layers in understanding and predicting α-linolenic acid content in plants using amino acid characteristics of omega-3 fatty acid desaturase.

Non-coding and coding genomic variants distinguish prostate cancer, castration-resistant prostate cancer, familial prostate cancer, and metastatic castration-resistant prostate cancer from each other

Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments

Oxalate-degrading bacteria, including Oxalobacter formigenes, colonise the gastrointestinal tract of healthy koalas (Phascolarctos cinereus) and those with oxalate nephrosis

Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.

Prediction of key regulators and downstream targets of E. coli induced mastitis

Prediction of potential cancer-risk regions based on transcriptome data: towards a comprehensive view

Prediction of thermostability from amino acid attributes by combination of clustering with attribute weighting: a new vista in engineering enzymes.

Protein attributes contribute to halo-stability, bioinformatics approach.

Protein interaction network of Arabidopsis thaliana female gametophyte development identifies novel proteins and relations

Recombinant M2e protein-based ELISA: a novel and inexpensive approach for differentiating avian influenza infected chickens from vaccinated ones

Root and shoot parts of strawberry: factories for production of functional human pro-insulin

SpliceDetector: a software for detection of alternative splicing events in human and model organisms directly from transcript IDs.

The Inhibitory Effect of Ginger Extract on Ovarian Cancer Cell Line; Application of Systems Biology

The Magnitude of Androgen Receptor Positivity in Breast Cancer Is Critical for Reliable Prediction of Disease Outcome.

The Zebrafish Equivalent of Alzheimer's Disease-Associated PRESENILIN Isoform PS2V Regulates Inflammatory and Other Responses to Hypoxic Stress.

The combined effects of three-dimensional cell culture and natural tissue extract on neural differentiation of P19 embryonal carcinoma stem cells