Lista de obras - Ferhat Ay - Dominio Público Uruguay

17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells

artículo científico publicado en 2016

A fast and accurate algorithm for comparative analysis of metabolic pathways.

artículo científico publicado en 2009

A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions

artículo científico publicado en 2016

A predictive modeling approach for cell line-specific long-range regulatory interactions

artículo científico publicado en 2015

A predictive modeling approach for cell line-specific long-range regulatory interactions.

artículo científico publicado en 2015

A statistical approach for inferring the 3D structure of the genome

artículo científico publicado en 2014

Accurate identification of centromere locations in yeast genomes using Hi-C.

artículo científico publicado en 2015

Analysis methods for studying the 3D architecture of the genome

artículo científico publicado en 2015

Bipartite structure of the inactive mouse X chromosome

artículo científico publicado en 2015

COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types

scientific article published on 02 December 2020

Combined RNA-seq and RAT-seq mapping of long noncoding RNAs in pluripotent reprogramming

artículo científico publicado en 2018

Comparative 3D genome organization in apicomplexan parasites

scientific article published on 05 February 2019

Comprehensive identification and analysis of human accelerated regulatory DNA

artículo científico publicado en 2015

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

artículo científico publicado en 2014

Form and function of topologically associating genomic domains in budding yeast

artículo científico publicado en 2017

Genomic interaction profiles in breast cancer reveal altered chromatin architecture

artículo científico publicado en 2013

Human Eosinophils Express a Distinct Gene Expression Program in Response to IL-3 Compared with Common β-Chain Cytokines IL-5 and GM-CSF

artículo científico publicado en 2019

Identification of copy number variations and translocations in cancer cells from Hi-C data

artículo científico publicado en 2017

Identification of significant chromatin contacts from HiChIP data by FitHiChIP

artículo científico publicado en 2019

Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C

artículo científico publicado en 2015

Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2

scientific article published on 24 January 2020

Implications of COMT long-range interactions on the phenotypic variability of 22q11.2 deletion syndrome.

artículo científico publicado en 2013

Integrative detection and analysis of structural variation in cancer genomes

artículo científico publicado en 2018

Intratumoral follicular regulatory T cells curtail anti-PD-1 treatment efficacy

artículo científico publicado en 2021

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

artículo científico publicado en 2015

Metabolic network alignment in large scale by network compression

artículo científico publicado en 2012

Multi-cell type gene coexpression network analysis reveals coordinated interferon response and cross-cell type correlations in systemic lupus erythematosus

artículo científico publicado en 2021

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum

artículo científico publicado en 2014

Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation

scientific article published on 30 September 2020

NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains

artículo científico publicado en 2019

Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome

artículo científico publicado en 2016

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

artículo científico publicado en 2012

Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants

artículo científico publicado en 2020

Scalable steady state analysis of Boolean biological regulatory networks

artículo científico publicado en 2009

Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer

scientific article published on 21 June 2019

Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

artículo científico publicado en 2014

TET enzymes augment activation-induced deaminase (AID) expression via 5-hydroxymethylcytosine modifications at the Aicda superenhancer

artículo científico publicado en 2019

The role of 3D genome organization in disease: From compartments to single nucleotides

scientific article published on 17 July 2018

The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING-IFN-β pathway

artículo científico publicado en 2021

Third-generation sequencing revises the molecular karyotype for <i>Toxoplasma gondii</i> and identifies emerging copy number variants in sexual recombinants

artículo científico publicado en 2021

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

artículo científico publicado en 2014

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

artículo científico publicado en 2015

Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution

artículo científico publicado en 2018

Lista de obras de Ferhat Ay

17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells

A fast and accurate algorithm for comparative analysis of metabolic pathways.

A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions

A predictive modeling approach for cell line-specific long-range regulatory interactions

A predictive modeling approach for cell line-specific long-range regulatory interactions.

A statistical approach for inferring the 3D structure of the genome

Accurate identification of centromere locations in yeast genomes using Hi-C.

Analysis methods for studying the 3D architecture of the genome

Bipartite structure of the inactive mouse X chromosome

COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types

Combined RNA-seq and RAT-seq mapping of long noncoding RNAs in pluripotent reprogramming

Comparative 3D genome organization in apicomplexan parasites

Comprehensive identification and analysis of human accelerated regulatory DNA

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

Form and function of topologically associating genomic domains in budding yeast

Genomic interaction profiles in breast cancer reveal altered chromatin architecture

Human Eosinophils Express a Distinct Gene Expression Program in Response to IL-3 Compared with Common β-Chain Cytokines IL-5 and GM-CSF

Identification of copy number variations and translocations in cancer cells from Hi-C data

Identification of significant chromatin contacts from HiChIP data by FitHiChIP

Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C

Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2

Implications of COMT long-range interactions on the phenotypic variability of 22q11.2 deletion syndrome.

Integrative detection and analysis of structural variation in cancer genomes

Intratumoral follicular regulatory T cells curtail anti-PD-1 treatment efficacy

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

Metabolic network alignment in large scale by network compression

Multi-cell type gene coexpression network analysis reveals coordinated interferon response and cross-cell type correlations in systemic lupus erythematosus

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum

Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation

NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains

Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants

Scalable steady state analysis of Boolean biological regulatory networks

Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer

Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

TET enzymes augment activation-induced deaminase (AID) expression via 5-hydroxymethylcytosine modifications at the Aicda superenhancer

The role of 3D genome organization in disease: From compartments to single nucleotides

The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING-IFN-β pathway

Third-generation sequencing revises the molecular karyotype for <i>Toxoplasma gondii</i> and identifies emerging copy number variants in sexual recombinants

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution