Lista de obras - Nicholas J Croucher - Dominio Público Uruguay

A high-resolution view of genome-wide pneumococcal transformation

artículo científico publicado en 2012

A simple method for directional transcriptome sequencing using Illumina technology

artículo científico publicado en 2009

A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

artículo científico publicado en 2009

Alterations in chromosomal genes nfsA, nfsB, and ribE are associated with nitrofurantoin resistance in Escherichia coli from the United Kingdom

artículo científico publicado en 2021

Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates

artículo científico publicado en 2022

Antibiotic treatment of clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts

artículo científico publicado en 2009

Bacterial genomes in epidemiology--present and future.

artículo científico publicado en 2013

Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes

artículo científico publicado en 2014

Correction: Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.

artículo científico publicado en 2011

Dense genomic sampling identifies highways of pneumococcal recombination

artículo científico publicado en 2014

Designing ecologically optimized pneumococcal vaccines using population genomics

artículo científico publicado en 2020

Detection of recombination events in bacterial genomes from large population samples

artículo científico publicado en 2011

Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening

artículo científico publicado en 2017

Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection

artículo científico publicado en 2019

Diversification of bacterial genome content through distinct mechanisms over different timescales.

artículo científico publicado en 2014

Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection

artículo científico publicado en 2013

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

artículo científico publicado en 2018

Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.

artículo científico publicado en 2017

Evidence for several waves of global transmission in the seventh cholera pandemic

artículo científico publicado en 2011

Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape

artículo científico publicado en 2014

Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition

article

Fast and flexible bacterial genomic epidemiology with PopPUNK

artículo científico publicado en 2019

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

artículo científico publicado en 2020

Frequency-dependent selection in vaccine-associated pneumococcal population dynamics.

artículo científico publicado en 2017

Genetic characterisation of Malawian pneumococci prior to the roll-out of the PCV13 vaccine using a high-throughput whole genome sequencing approach

artículo científico publicado en 2012

Genome-wide association, prediction and heritability in bacteria with application to <i>Streptococcus pneumoniae</i>

artículo científico publicado en 2022

Genome-wide identification of lineage and locus specific variation associated with pneumococcal carriage duration

artículo científico publicado en 2017

Genomic epidemiology of penicillin-non-susceptible Streptococcus pneumoniae

artículo científico publicado en 2019

Heterogeneity in the frequency and characteristics of homologous recombination in pneumococcal evolution

artículo científico publicado en 2014

Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict.

artículo científico publicado en 2016

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

artículo científico publicado en 2020

Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity.

artículo científico publicado en 2015

Identification, variation and transcription of pneumococcal repeat sequences

artículo científico publicado en 2011

Impact of 13-Valent Pneumococcal Conjugate Vaccination on Streptococcus pneumoniae Carriage in Young Children in Massachusetts.

artículo científico publicado en 2013

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

artículo científico publicado en 2017

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact

artículo científico publicado en 2019

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

scholarly article

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

artículo científico publicado en 2019

Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis

artículo científico publicado en 2017

Large scale genomic analysis shows no evidence for repeated pathogen adaptation during the invasive phase of bacterial meningitis in humans

Lineage-specific virulence determinants of Haemophilus influenzae biogroup aegyptius

artículo científico publicado en 2012

Panproteome-wide analysis of antibody responses to whole cell pneumococcal vaccination

article

Phandango: an interactive viewer for bacterial population genomics.

artículo científico publicado en 2017

Phase-variable methylation and epigenetic regulation by type I restriction-modification systems

artículo científico publicado en 2017

Pneumococcal Vaccines: Host Interactions, Population Dynamics, and Design Principles

scientific article published on 01 September 2018

Pneumococcal capsular switching: a historical perspective

artículo científico publicado en 2012

Pneumococcal capsule synthesis locus cps as evolutionary hotspot with potential to generate novel serotypes by recombination.

artículo científico publicado en 2017

Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae

artículo científico publicado en 2015

Population genomics of post-vaccine changes in pneumococcal epidemiology.

artículo científico publicado en 2013

Prediction of post-vaccine population structure of Streptococcus pneumoniae using accessory gene frequencies

article

Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores

artículo científico publicado en 2009

RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006.

artículo científico publicado en 2013

Rapid Pneumococcal Evolution in Response to Clinical Interventions ⬇️

artículo científico publicado el 28 de enero de 2011

Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis

artículo científico publicado en 2009

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

artículo científico publicado en 2014

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak

artículo científico publicado en 2012

Recombination of the Phase-Variable spnIII Locus Is Independent of All Known Pneumococcal Site-Specific Recombinases

artículo científico publicado en 2019

Recombination produces coherent bacterial species clusters in both core and accessory genomes.

artículo científico publicado en 2015

Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81

artículo científico publicado en 2008

Selective and genetic constraints on pneumococcal serotype switching

artículo científico publicado en 2015

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

artículo científico publicado en 2016

Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis

artículo científico publicado en 2011

SuperDCA for genome-wide epistasis analysis

artículo científico publicado en 2018

Synergistic Activity of Mobile Genetic Element Defences in Streptococcus pneumoniae

scientific article published on 13 September 2019

The application of genomics to tracing bacterial pathogen transmission.

artículo científico publicado en 2014

The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success

artículo científico publicado en 2012

The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci

artículo científico publicado en 2021

Transformation asymmetry and the evolution of the bacterial accessory genome.

artículo científico publicado en 2017

Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone

artículo científico publicado en 2014

Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates

scientific article published on 30 April 2020

Lista de obras de Nicholas J Croucher

A high-resolution view of genome-wide pneumococcal transformation

A simple method for directional transcriptome sequencing using Illumina technology

A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

Alterations in chromosomal genes nfsA, nfsB, and ribE are associated with nitrofurantoin resistance in Escherichia coli from the United Kingdom

Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates

Antibiotic treatment of clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts

Bacterial genomes in epidemiology--present and future.

Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes

Correction: Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.

Dense genomic sampling identifies highways of pneumococcal recombination

Designing ecologically optimized pneumococcal vaccines using population genomics

Detection of recombination events in bacterial genomes from large population samples

Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening

Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection

Diversification of bacterial genome content through distinct mechanisms over different timescales.

Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.

Evidence for several waves of global transmission in the seventh cholera pandemic

Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape

Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition

Fast and flexible bacterial genomic epidemiology with PopPUNK

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

Frequency-dependent selection in vaccine-associated pneumococcal population dynamics.

Genetic characterisation of Malawian pneumococci prior to the roll-out of the PCV13 vaccine using a high-throughput whole genome sequencing approach

Genome-wide association, prediction and heritability in bacteria with application to <i>Streptococcus pneumoniae</i>

Genome-wide identification of lineage and locus specific variation associated with pneumococcal carriage duration

Genomic epidemiology of penicillin-non-susceptible Streptococcus pneumoniae

Heterogeneity in the frequency and characteristics of homologous recombination in pneumococcal evolution

Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict.

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity.

Identification, variation and transcription of pneumococcal repeat sequences

Impact of 13-Valent Pneumococcal Conjugate Vaccination on Streptococcus pneumoniae Carriage in Young Children in Massachusetts.

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis

Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis

Large scale genomic analysis shows no evidence for repeated pathogen adaptation during the invasive phase of bacterial meningitis in humans

Lineage-specific virulence determinants of Haemophilus influenzae biogroup aegyptius

Panproteome-wide analysis of antibody responses to whole cell pneumococcal vaccination

Phandango: an interactive viewer for bacterial population genomics.

Phase-variable methylation and epigenetic regulation by type I restriction-modification systems

Pneumococcal Vaccines: Host Interactions, Population Dynamics, and Design Principles

Pneumococcal capsular switching: a historical perspective

Pneumococcal capsule synthesis locus cps as evolutionary hotspot with potential to generate novel serotypes by recombination.

Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae

Population genomics of post-vaccine changes in pneumococcal epidemiology.

Prediction of post-vaccine population structure of Streptococcus pneumoniae using accessory gene frequencies

Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores

RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006.

Rapid Pneumococcal Evolution in Response to Clinical Interventions ⬇️

Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak

Recombination of the Phase-Variable spnIII Locus Is Independent of All Known Pneumococcal Site-Specific Recombinases

Recombination produces coherent bacterial species clusters in both core and accessory genomes.

Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81

Selective and genetic constraints on pneumococcal serotype switching

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis

SuperDCA for genome-wide epistasis analysis

Synergistic Activity of Mobile Genetic Element Defences in Streptococcus pneumoniae

The application of genomics to tracing bacterial pathogen transmission.

The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success

The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci

Transformation asymmetry and the evolution of the bacterial accessory genome.

Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone

Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates