Lista de obras - Laura A Katz - Dominio Público Uruguay

A Program Aimed toward Inclusive Excellence for Underrepresented Undergraduate Women in the Sciences

artículo científico publicado en 2017

A multigene analysis of Corallomyxa tenera sp. nov. suggests its membership in a clade that includes Gromia, Haplosporidia and Foraminifera

artículo científico publicado en 2007

A paradox: rapid evolution rates of germline-limited sequences are associated with conserved patterns of rearrangements in cryptic species of Chilodonella uncinata (Protista, Ciliophora)

artículo científico publicado en 2018

Alternative processing of scrambled genes generates protein diversity in the ciliate Chilodonella uncinata

artículo científico publicado en 2010

Amoebozoans Are Secretly but Ancestrally Sexual: Evidence for Sex Genes and Potential Novel Crossover Pathways in Diverse Groups of Amoebae.

artículo científico publicado en 2017

An epigenetic toolkit allows for diverse genome architectures in eukaryotes.

artículo científico publicado en 2015

Analyses of alternatively processed genes in ciliates provide insights into the origins of scrambled genomes and may provide a mechanism for speciation.

artículo científico publicado en 2015

Analyses of chromosome copy number and expression level of four genes in the ciliate Chilodonella uncinata reveal a complex pattern that suggests epigenetic regulation

artículo científico publicado en 2012

Are microbes fundamentally different than macroorganisms? Convergence and a possible case for neutral phenotypic evolution in testate amoeba (Amoebozoa: Arcellinida)

artículo científico publicado en 2015

Assessing Whether Alpha-Tubulin Sequences Are Suitable for Phylogenetic Reconstruction of Ciliophora with Insights into Its Evolution in Euplotids ⬇️

artículo científico publicado el 10 de julio de 2012

Assessing the effects of a sequestered germline on interdomain lateral gene transfer in Metazoa

artículo científico publicado en 2016

Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life

artículo científico publicado en 2010

Broadly sampled multigene trees of eukaryotes

artículo científico publicado en 2008

Building a phylogenomic pipeline for the eukaryotic tree of life - addressing deep phylogenies with genome-scale data

artículo científico publicado en 2014

Changing perspectives on the origin of eukaryotes

scientific article published on 01 December 1998

Characterization of the life cycle and heteromeric nature of the macronucleus of the ciliate Chilodonella uncinata using fluorescence microscopy

artículo científico publicado en 2014

Ciliate diversity and distribution across an environmental and depth gradient in Long Island Sound, USA.

artículo científico publicado en 2010

Combined genome and transcriptome analyses of the ciliate Schmidingerella arcuata (Spirotrichea) reveal patterns of DNA elimination, scrambling, and inversion

scientific article published on 01 September 2020

Comparative Studies on the Polymorphism and Copy Number Variation of mtSSU rDNA in Ciliates (Protista, Ciliophora): Implications for Phylogenetic, Environmental, and Ecological Research

scientific article published on 25 February 2020

Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil

scientific article published on 10 March 2020

Comprehensive phylogenetic reconstruction of amoebozoa based on concatenated analyses of SSU-rDNA and actin genes

artículo científico publicado en 2011

Congruence and indifference between two molecular markers for understanding oral evolution in the Marynidae sensu lato (Ciliophora, Colpodea)

artículo científico publicado en 2012

Cryptic diversity within morphospecies of testate amoebae (Amoebozoa: Arcellinida) in New England bogs and fens

artículo científico publicado en 2014

DAPI staining and DNA content estimation of nuclei in uncultivable microbial eukaryotes (Arcellinida and Ciliates)

artículo científico

De novo Sequencing, Assembly, and Annotation of the Transcriptome for the Free-Living Testate Amoeba Arcella intermedia

scientific article published on 23 January 2020

Disentangling sources of variation in SSU rDNA sequences from single cell analyses of ciliates: impact of copy number variation and experimental error

artículo científico publicado en 2017

Distribution of Abundant and Active Planktonic Ciliates in Coastal and Slope Waters Off New England.

artículo científico publicado en 2017

Diversity of diversity: conceptual and methodological differences in biodiversity estimates of eukaryotic microbes as compared to bacteria.

artículo científico publicado en 2014

Diversity of oligotrichia and choreotrichia ciliates in coastal marine sediments and in overlying plankton

artículo científico publicado en 2010

Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes

artículo científico publicado en 2003

Editorial

Estimating the timing of early eukaryotic diversification with multigene molecular clocks ⬇️

artículo científico publicado en 2011

Evaluating support for the current classification of eukaryotic diversity ⬇️

artículo científico publicado en 2006

Evolution of developmentally regulated genome rearrangements in eukaryotes

artículo científico publicado en 2005

Evolution of duplicated alpha-tubulin genes in ciliates

artículo científico publicado en 2002

Evolution of the actin gene family in testate lobose amoebae (Arcellinida) is characterized by two distinct clades of paralogs and recent independent expansions

artículo científico publicado en 2011

Evolution: Lost worlds

artículo científico publicado en 1998

Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker

artículo científico publicado en 2010

Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics).

artículo científico publicado en 2018

Failed species, innominate forms, and the vain search for species limits: cryptic diversity in dusky salamanders (Desmognathus) of eastern Tennessee

artículo científico publicado en 2013

Foraminifera as a model of eukaryotic genome dynamism

artículo científico publicado en 2024

Frontiers in genomics: insights into protist evolutionary biology, University of Iowa, May 19-21, 2004

artículo científico publicado en 2005

Further analyses of variation of ribosome DNA copy number and polymorphism in ciliates provide insights relevant to studies of both molecular ecology and phylogeny

scientific article published on 21 January 2019

Genetic identities of Cryptic species in the Strombidium stylifer/apolatum/oculatum cluster, including a description of Strombidium rassoulzadegani n. sp.

artículo científico publicado en 2010

Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors

scientific article published on 06 June 2019

Genome architecture drives protein evolution in ciliates

artículo científico publicado en 2006

Genome diversity in microbial eukaryotes

artículo científico publicado en 2004

Genome dynamics are influenced by food source in Allogromia laticollaris strain CSH (Foraminifera)

artículo científico publicado en 2010

Genome structure drives patterns of gene family evolution in ciliates, a case study using Chilodonella uncinata (Protista, Ciliophora, Phyllopharyngea)

artículo científico publicado en 2014

Genomes: epigenomics and the future of genome sciences

artículo científico publicado en 2006

Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata.

artículo científico publicado en 2011

High Diversity of Testate Amoebae (Amoebozoa, Arcellinida) Detected by HTS Analyses in a New England Fen using Newly Designed Taxon-specific Primers

scientific article published on 07 March 2020

How discordant morphological and molecular evolution among microorganisms can revise our notions of biodiversity on Earth

artículo científico publicado en 2014

Identification of new molecular markers for assembling the eukaryotic tree of life

artículo científico publicado en 2010

Incubation and grazing effects on spirotrich ciliate diversity inferred from molecular analyses of microcosm experiments

scientific article published on 06 May 2019

Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci

artículo científico publicado en 2002

Insights into the phylogenetic and taxonomy of philasterid ciliates (Protozoa, Ciliophora, Scuticociliatia) based on analyses of multiple molecular markers.

artículo científico publicado en 2012

Insights into transgenerational epigenetics from studies of ciliates

artículo científico publicado en 2017

John Tyler Bonner: Remembering a scientific pioneer

scientific article published on 19 November 2019

Lost branches on the tree of life

artículo científico publicado en 2013

Microbial Diversity in the Eukaryotic SAR Clade: Illuminating the Darkness Between Morphology and Molecular Data

artículo científico publicado en 2018

Micronuclear and macronuclear forms of beta-tubulin genes in the ciliate Chilodonella uncinata reveal insights into genome processing and protein evolution

artículo científico publicado en 2007

Molecular Data are Transforming Hypotheses on the Origin and Diversification of Eukaryotes

artículo científico publicado en 2009

Molecular Phylogeny of Phyllopharyngean Ciliates and their Group I Introns

artículo científico publicado en 2004

Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling

artículo científico publicado en 2007

Multigene evidence for the placement of a heterotrophic amoeboid lineage Leukarachnion sp. among photosynthetic stramenopiles

artículo científico publicado en 2009

Multigene phylogenetic reconstruction of the Tubulinea (Amoebozoa) corroborates four of the six major lineages, while additionally revealing that shell composition does not predict phylogeny in the Arcellinida

artículo científico publicado en 2013

Multigene-based analyses on evolutionary phylogeny of two controversial ciliate orders: Pleuronematida and Loxocephalida (Protista, Ciliophora, Oligohymenophorea).

artículo científico publicado en 2013

Nanochromosome copy number does not correlate with RNA levels though patterns are conserved between strains of the ciliate morphospecies Chilodonella uncinata.

artículo científico publicado en 2014

Nuclear Architecture and Patterns of Molecular Evolution Are Correlated in the Ciliate Chilodonella uncinata

artículo científico publicado en 2016

Nuclear Features of the Heterotrich Ciliate Blepharisma americanum: Genomic Amplification, Life Cycle, and Nuclear Inclusion

artículo científico publicado en 2017

Old genes in new places: A taxon-rich analysis of interdomain lateral gene transfer events

artículo científico publicado en 2022

On the nature of species: insights from Paramecium and other ciliates.

artículo científico publicado en 2011

Opinion: Genetic Conflict With Mobile Elements Drives Eukaryotic Genome Evolution, and Perhaps Also Eukaryogenesis

artículo científico publicado en 2021

Origin and Diversification of Eukaryotes ⬇️

artículo científico publicado el 9 de julio de 2012

Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf

artículo científico publicado en 2016

Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?

scientific article published on 05 February 2016

Patterns of protein evolution in Tetrahymena thermophila: implications for estimates of effective population size

artículo científico publicado en 2005

PhyloChromoMap, a tool for mapping phylogenomic history along chromosomes, reveals the dynamic nature of karyotype evolution in Plasmodium falciparum

artículo científico publicado en 2018

PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes

artículo científico publicado en 2019

Phylogenetic analyses of cyclidiids (Protista, Ciliophora, Scuticociliatia) based on multiple genes suggest their close relationship with thigmotrichids.

artículo científico publicado en 2014

Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within 'Amoebozoa' upon removal of varying rate classes of SSU-rDNA.

artículo científico publicado en 2007

Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931.

artículo científico publicado en 2009

Phylogenomic analyses support the bifurcation of ciliates into two major clades that differ in properties of nuclear division

artículo científico publicado en 2013

Phylogenomic study indicates widespread lateral gene transfer in Entamoeba and suggests a past intimate relationship with parabasalids.

artículo científico publicado en 2014

Phylogenomics of 'Discosea': A new molecular phylogenetic perspective on Amoebozoa with flat body forms

artículo científico publicado en 2016

Phylogenomics of the epigenetic toolkit reveals punctate retention of genes across eukaryotes ⬇️

artículo científico publicado en 2020

Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods

artículo científico publicado en 2014

Recent events dominate interdomain lateral gene transfers between prokaryotes and eukaryotes and, with the exception of endosymbiotic gene transfers, few ancient transfer events persist

artículo científico publicado en 2015

Reducing the impact of PCR-mediated recombination in molecular evolution and environmental studies using a new-generation high-fidelity DNA polymerase

artículo científico publicado en 2009

Sapocribrum chincoteaguense n. gen. n. sp.: A Small, Scale-bearing Amoebozoan with Flabellinid Affinities.

artículo científico publicado en 2014

Secretive ciliates and putative asexuality in microbial eukaryotes.

artículo científico publicado en 2010

Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates

artículo científico publicado en 2019

Stalking the wild Tetrahymena

artículo científico publicado en 2013

Structure of the micronuclear alpha-tubulin gene in the phyllopharyngean ciliate Chilodonella uncinata: implications for the evolution of chromosomal processing

artículo científico publicado en 2003

Subulatomonas tetraspora nov. gen. nov. sp. is a Member of a Previously Unrecognized Major Clade of Eukaryotes ⬇️

artículo científico publicado el 1 de julio de 2011

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

artículo científico publicado en 2015

Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites

artículo científico publicado en 2015

Tec3, a new developmentally eliminated DNA element in Euplotes crassus.

artículo científico publicado en 2003

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

artículo científico publicado en 2014

The chastity of amoebae: re-evaluating evidence for sex in amoeboid organisms

artículo científico publicado en 2011

The concept of the hologenome, an epigenetic phenomenon, challenges aspects of the modern evolutionary synthesis

scientific article published on 11 November 2019

The dynamic nature of eukaryotic genomes

artículo científico publicado en 2008

The dynamic nature of genomes across the tree of life.

artículo científico

Transkingdom transfer of the phosphoglucose isomerase gene

artículo científico publicado en 1996

Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.

artículo científico publicado en 2012

Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell 'Omics.

artículo científico publicado en 2018

Ubiquity or not ubiquity: That is the question

scientific article published on 01 November 2019

Unexpected biodiversity of ciliates in marine samples from below the photic zone.

artículo científico publicado en 2016

Unusual features of non-dividing somatic macronuclei in the ciliate class Karyorelictea

artículo científico publicado en 2017

Updated Virophage Taxonomy and Distinction from Polinton-like Viruses

artículo científico publicado en 2023

Variation in macronuclear genome content of three ciliates with extensive chromosomal fragmentation: a preliminary analysis

artículo científico publicado en 2007

What is a paradigm and when does it shift?

artículo científico publicado en 1991

Widespread distribution of extensive chromosomal fragmentation in ciliates

scientific article published on 01 July 2001

Lista de obras de Laura A Katz

A Program Aimed toward Inclusive Excellence for Underrepresented Undergraduate Women in the Sciences

A multigene analysis of Corallomyxa tenera sp. nov. suggests its membership in a clade that includes Gromia, Haplosporidia and Foraminifera

A paradox: rapid evolution rates of germline-limited sequences are associated with conserved patterns of rearrangements in cryptic species of Chilodonella uncinata (Protista, Ciliophora)

Alternative processing of scrambled genes generates protein diversity in the ciliate Chilodonella uncinata

Amoebozoans Are Secretly but Ancestrally Sexual: Evidence for Sex Genes and Potential Novel Crossover Pathways in Diverse Groups of Amoebae.

An epigenetic toolkit allows for diverse genome architectures in eukaryotes.

Analyses of alternatively processed genes in ciliates provide insights into the origins of scrambled genomes and may provide a mechanism for speciation.

Analyses of chromosome copy number and expression level of four genes in the ciliate Chilodonella uncinata reveal a complex pattern that suggests epigenetic regulation

Are microbes fundamentally different than macroorganisms? Convergence and a possible case for neutral phenotypic evolution in testate amoeba (Amoebozoa: Arcellinida)

Assessing Whether Alpha-Tubulin Sequences Are Suitable for Phylogenetic Reconstruction of Ciliophora with Insights into Its Evolution in Euplotids ⬇️

Assessing the effects of a sequestered germline on interdomain lateral gene transfer in Metazoa

Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life

Broadly sampled multigene trees of eukaryotes

Building a phylogenomic pipeline for the eukaryotic tree of life - addressing deep phylogenies with genome-scale data

Changing perspectives on the origin of eukaryotes

Characterization of the life cycle and heteromeric nature of the macronucleus of the ciliate Chilodonella uncinata using fluorescence microscopy

Ciliate diversity and distribution across an environmental and depth gradient in Long Island Sound, USA.

Combined genome and transcriptome analyses of the ciliate Schmidingerella arcuata (Spirotrichea) reveal patterns of DNA elimination, scrambling, and inversion

Comparative Studies on the Polymorphism and Copy Number Variation of mtSSU rDNA in Ciliates (Protista, Ciliophora): Implications for Phylogenetic, Environmental, and Ecological Research

Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil

Comprehensive phylogenetic reconstruction of amoebozoa based on concatenated analyses of SSU-rDNA and actin genes

Congruence and indifference between two molecular markers for understanding oral evolution in the Marynidae sensu lato (Ciliophora, Colpodea)

Cryptic diversity within morphospecies of testate amoebae (Amoebozoa: Arcellinida) in New England bogs and fens

DAPI staining and DNA content estimation of nuclei in uncultivable microbial eukaryotes (Arcellinida and Ciliates)

De novo Sequencing, Assembly, and Annotation of the Transcriptome for the Free-Living Testate Amoeba Arcella intermedia

Disentangling sources of variation in SSU rDNA sequences from single cell analyses of ciliates: impact of copy number variation and experimental error

Distribution of Abundant and Active Planktonic Ciliates in Coastal and Slope Waters Off New England.

Diversity of diversity: conceptual and methodological differences in biodiversity estimates of eukaryotic microbes as compared to bacteria.

Diversity of oligotrichia and choreotrichia ciliates in coastal marine sediments and in overlying plankton

Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes

Editorial

Estimating the timing of early eukaryotic diversification with multigene molecular clocks ⬇️

Evaluating support for the current classification of eukaryotic diversity ⬇️

Evolution of developmentally regulated genome rearrangements in eukaryotes

Evolution of duplicated alpha-tubulin genes in ciliates

Evolution of the actin gene family in testate lobose amoebae (Arcellinida) is characterized by two distinct clades of paralogs and recent independent expansions

Evolution: Lost worlds

Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker

Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics).

Failed species, innominate forms, and the vain search for species limits: cryptic diversity in dusky salamanders (Desmognathus) of eastern Tennessee

Foraminifera as a model of eukaryotic genome dynamism

Frontiers in genomics: insights into protist evolutionary biology, University of Iowa, May 19-21, 2004

Further analyses of variation of ribosome DNA copy number and polymorphism in ciliates provide insights relevant to studies of both molecular ecology and phylogeny

Genetic identities of Cryptic species in the Strombidium stylifer/apolatum/oculatum cluster, including a description of Strombidium rassoulzadegani n. sp.

Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors

Genome architecture drives protein evolution in ciliates

Genome diversity in microbial eukaryotes

Genome dynamics are influenced by food source in Allogromia laticollaris strain CSH (Foraminifera)

Genome structure drives patterns of gene family evolution in ciliates, a case study using Chilodonella uncinata (Protista, Ciliophora, Phyllopharyngea)

Genomes: epigenomics and the future of genome sciences

Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata.

High Diversity of Testate Amoebae (Amoebozoa, Arcellinida) Detected by HTS Analyses in a New England Fen using Newly Designed Taxon-specific Primers

How discordant morphological and molecular evolution among microorganisms can revise our notions of biodiversity on Earth

Identification of new molecular markers for assembling the eukaryotic tree of life

Incubation and grazing effects on spirotrich ciliate diversity inferred from molecular analyses of microcosm experiments

Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci

Insights into the phylogenetic and taxonomy of philasterid ciliates (Protozoa, Ciliophora, Scuticociliatia) based on analyses of multiple molecular markers.

Insights into transgenerational epigenetics from studies of ciliates

John Tyler Bonner: Remembering a scientific pioneer

Lost branches on the tree of life

Microbial Diversity in the Eukaryotic SAR Clade: Illuminating the Darkness Between Morphology and Molecular Data

Micronuclear and macronuclear forms of beta-tubulin genes in the ciliate Chilodonella uncinata reveal insights into genome processing and protein evolution

Molecular Data are Transforming Hypotheses on the Origin and Diversification of Eukaryotes

Molecular Phylogeny of Phyllopharyngean Ciliates and their Group I Introns

Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling

Multigene evidence for the placement of a heterotrophic amoeboid lineage Leukarachnion sp. among photosynthetic stramenopiles

Multigene phylogenetic reconstruction of the Tubulinea (Amoebozoa) corroborates four of the six major lineages, while additionally revealing that shell composition does not predict phylogeny in the Arcellinida

Multigene-based analyses on evolutionary phylogeny of two controversial ciliate orders: Pleuronematida and Loxocephalida (Protista, Ciliophora, Oligohymenophorea).

Nanochromosome copy number does not correlate with RNA levels though patterns are conserved between strains of the ciliate morphospecies Chilodonella uncinata.

Nuclear Architecture and Patterns of Molecular Evolution Are Correlated in the Ciliate Chilodonella uncinata

Nuclear Features of the Heterotrich Ciliate Blepharisma americanum: Genomic Amplification, Life Cycle, and Nuclear Inclusion

Old genes in new places: A taxon-rich analysis of interdomain lateral gene transfer events

On the nature of species: insights from Paramecium and other ciliates.

Opinion: Genetic Conflict With Mobile Elements Drives Eukaryotic Genome Evolution, and Perhaps Also Eukaryogenesis

Origin and Diversification of Eukaryotes ⬇️

Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf

Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?

Patterns of protein evolution in Tetrahymena thermophila: implications for estimates of effective population size

PhyloChromoMap, a tool for mapping phylogenomic history along chromosomes, reveals the dynamic nature of karyotype evolution in Plasmodium falciparum