Lista de obras - M Yamamoto - Dominio Público Uruguay

A large pocket structure surrounding the catalytic center in the BCG protein from Mycobacterium tuberculosis

A large-area CMOS imager as an X-ray detector for synchrotron radiation experiments.

artículo científico publicado en 2004

A nearly on-axis spectroscopic system for simultaneously measuring UV-visible absorption and X-ray diffraction in the SPring-8 structural genomics beamline

artículo científico publicado en 2016

A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions

artículo científico publicado en 2015

A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method

scientific article published on 14 June 2019

An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography

artículo científico publicado en 2015

An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser

scientific article published on 17 October 2019

An unprecedented dioxygen species revealed by serial femtosecond rotation crystallography in copper nitrite reductase.

artículo científico publicado en 2018

An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures

Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.

artículo científico publicado en 2018

Beamline Scheduling Software: administration software for automatic operation of the RIKEN structural genomics beamlines at SPring-8.

artículo científico publicado en 2005

Blue Light-excited Light-Oxygen-Voltage-sensing Domain 2 (LOV2) Triggers a Rearrangement of the Kinase Domain to Induce Phosphorylation Activity in Arabidopsis Phototropin1

artículo científico publicado en 2016

Blue-light excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis

artículo científico publicado en 2017

Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.

artículo científico publicado en 2017

Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography

scientific article published on 23 June 2019

Cell-free methods to produce structurally intact mammalian membrane proteins.

artículo científico publicado en 2016

Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96 ⬇️

artículo científico publicado el 30 de julio de 2010

Coherent X-Ray Diffraction Imaging of Chloroplasts from Cyanidioschyzon merolae by Using X-Ray Free Electron Laser

artículo científico publicado en 2015

Coherent diffraction imaging analysis of shape-controlled nanoparticles with focused hard X-ray free-electron laser pulses.

artículo científico publicado en 2013

Common structural features of toxic intermediates from α-synuclein and GroES fibrillogenesis detected using cryogenic coherent X-ray diffraction imaging.

artículo científico publicado en 2016

Computer-controlled liquid-nitrogen drizzling device for removing frost from cryopreserved crystals

scientific article published on 25 November 2020

Critical Roles of Interactions among Switch I-preceding Residues and between Switch II and Its Neighboring α-Helix in Conformational Dynamics of the GTP-bound Ras Family Small GTPases ⬇️

artículo científico publicado el 9 de marzo de 2011

Cryocrystallography of 3-Isopropylmalate dehydrogenase from Thermus thermophilus and its chimeric enzyme

scientific article published on 01 July 1996

Crystal Structure of OXA-58 with the Substrate-Binding Cleft in a Closed State: Insights into the Mobility and Stability of the OXA-58 Structure

artículo científico publicado en 2015

Crystal Structures of Human Orexin 2 Receptor Bound to the Subtype-Selective Antagonist EMPA.

artículo científico publicado en 2017

Crystal structure of H2-proteinase from the venom of Trimeresurus flavoviridis

artículo científico publicado en 1996

Crystal structure of M-Ras reveals a GTP-bound "off" state conformation of Ras family small GTPases.

artículo científico publicado en 2005

Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases

artículo científico publicado en 2000

Crystal structure of a bacterial homologue of SWEET transporters.

artículo científico publicado en 2014

Crystal structure of a family 80 chitosanase from Mitsuaria chitosanitabida.

artículo científico publicado en 2017

Crystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8

artículo científico publicado en 2000

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

artículo científico publicado en 2010

Crystal structure of rhodopsin: A G protein-coupled receptor

artículo científico publicado en 2000

Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida

artículo científico publicado en 2000

Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor

artículo científico publicado en 2003

Crystal structures of the human adiponectin receptors

artículo científico publicado en 2015

Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants

artículo científico publicado en 2012

Crystallization and preliminary X-ray analyses of quaternary, ternary and binary protein-DNA complexes with involvement of AML1/Runx-1/CBFalpha Runt domain, CBFbeta and the C/EBPbeta bZip region

scientific article published on 25 May 2001

Crystallization and preliminary X-ray analysis of the stress-response PPM phosphatase RsbX from Bacillus subtilis

artículo científico publicado en 2009

Crystallization and preliminary X-ray crystallographic analysis of Thermus thermophilus transcription elongation complex bound to Gfh1.

artículo científico publicado en 2009

Crystallization and preliminary X-ray diffraction analysis [correction of anaylsis] of the LOV1 domains of phototropin 1 and 2 from Arabidopsis thaliana.

artículo científico publicado en 2008

Crystals of ternary protein-DNA complexes composed of DNA-binding domains of c-Myb or v-Myb, C/EBPalpha or C/EBPbeta and tom-1A promoter fragment

artículo científico publicado en 2001

Curved EFC/F-BAR-domain dimers are joined end to end into a filament for membrane invagination in endocytosis

artículo científico publicado en 2007

DeepCentering: fully automated crystal centering using deep learning for macromolecular crystallography

scientific article published on 03 June 2019

Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL

artículo científico publicado en 2014

Development of SPACE-II for rapid sample exchange at SPring-8 macromolecular crystallography beamlines

artículo científico publicado en 2020

Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography

artículo científico publicado en 2017

Development of an online UV-visible microspectrophotometer for a macromolecular crystallography beamline

artículo científico publicado en 2013

Diffraction apparatus and procedure in tomography X-ray diffraction imaging for biological cells at cryogenic temperature using synchrotron X-ray radiation

artículo científico publicado en 2018

Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo-electron microscopy

scientific article published on 28 August 2019

Dose dependence of radiation damage for protein crystals studied at various X-ray energies.

artículo científico publicado en 2006

Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method

artículo científico publicado en 2021

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

artículo científico publicado en 2017

Fast microtomography using bright monochromatic x-rays

artículo científico publicado en 2012

IDATEN and G-SITENNO: GUI-assisted software for coherent X-ray diffraction imaging experiments and data analyses at SACLA.

artículo científico publicado en 2014

In silico discovery of small-molecule Ras inhibitors that display antitumor activity by blocking the Ras-effector interaction

artículo científico publicado en 2013

Interaction and stoichiometry of the peripheral stalk subunits NtpE and NtpF and the N-terminal hydrophilic domain of NtpI of Enterococcus hirae V-ATPase.

artículo científico publicado en 2008

Interleukin-6 deficient mice are protected from bone loss caused by estrogen depletion

artículo científico publicado en 1994

KAMO: towards automated data processing for microcrystals.

artículo científico publicado en 2018

KOTOBUKI-1 apparatus for cryogenic coherent X-ray diffraction imaging

artículo científico publicado en 2013

Light-induced conformational changes of LOV1 (light oxygen voltage-sensing domain 1) and LOV2 relative to the kinase domain and regulation of kinase activity in Chlamydomonas phototropin.

artículo científico publicado en 2013

Long-wavelength native-SAD phasing: opportunities and challenges

artículo científico publicado en 2019

Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays

artículo científico publicado en 2019

Mail-in data collection at SPring-8 protein crystallography beamlines

artículo científico publicado en 2008

Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II

artículo científico publicado en 2010

Mechanism of c-Myb-C/EBP beta cooperation from separated sites on a promoter

artículo científico publicado en 2002

Mechanism of metal activation of human hematopoietic prostaglandin D synthase

artículo científico publicado en 2003

Micro-crystallography comes of age.

artículo científico publicado en 2012

Molecular basis of ligand recognition and transport by glucose transporters

artículo científico publicado en 2015

Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses

artículo científico publicado en 2015

Post-Transcriptional Regulator Hfq Binds Catalase HPII: Crystal Structure of the Complex

artículo científico publicado en 2013

Preliminary X-ray crystallographic study of glucose dehydrogenase from Thermus thermophilus HB8

artículo científico publicado en 2007

Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions

artículo científico publicado en 2009

Protein microcrystallography using synchrotron radiation

artículo científico publicado en 2017

Purification, crystallization and preliminary X-ray diffraction analysis of the Kelch-like motif region of mouse Keap1

artículo científico publicado en 2004

SPring-8 BL41XU, a high-flux macromolecular crystallography beamline.

artículo científico publicado en 2013

Sagittal focusing of synchrotron radiation X-rays using a winged crystal

artículo científico publicado en 2013

Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses

artículo científico publicado en 2014

Small-angle X-ray scattering analysis reveals the ATP-bound monomeric state of the ATPase domain from the homodimeric MutL endonuclease, a GHKL phosphotransferase superfamily protein

artículo científico publicado en 2015

Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA

artículo científico publicado en 2016

Standard Transport Channels of X-ray Beamlines at SPring-8

article

Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta

artículo científico publicado en 2001

Structural basis for disruption of claudin assembly in tight junctions by an enterotoxin.

artículo científico publicado en 2016

Structural basis for ligand capture and release by the endocytic receptor ApoER2.

artículo científico publicado en 2017

Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop.

artículo científico publicado en 2004

Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer

artículo científico publicado en 2004

Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms

artículo científico publicado en 2001

Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis

artículo científico publicado en 2015

Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling

artículo científico publicado en 2001

TAKASAGO-6 apparatus for cryogenic coherent X-ray diffraction imaging of biological non-crystalline particles using X-ray free electron laser at SACLA.

artículo científico publicado en 2016

Taste substance binding elicits conformational change of taste receptor T1r heterodimer extracellular domains

artículo científico publicado en 2016

The 1.48 A resolution crystal structure of the homotetrameric cytidine deaminase from mouse.

artículo científico publicado en 2006

The 1.55 A resolution structure of Nicotiana alata S(F11)-RNase associated with gametophytic self-incompatibility

artículo científico publicado en 2001

The Catalytic Architecture of Leukotriene C4 Synthase with Two Arginine Residues ⬇️

artículo científico publicado el 16 de marzo de 2011

The adoption of a twisted structure of importin-beta is essential for the protein-protein interaction required for nuclear transport

artículo científico publicado en 2000

The flexible C-terminal region of Aspergillus terreus blasticidin S deaminase: identification of its functional roles with deletion enzymes.

artículo científico publicado en 2002

The start of a new generation: the present status of the SPring-8 synchrotron and its use in structural biology

Trichromatic Concept Optimizes MAD Experiments in Synchrotron X-Ray Crystallography

artículo científico publicado en 2002

Trichromatic Concept at SPring-8 RIKEN Beamline I

scientific article published on 01 May 1998

X-ray Crystallographic Structure of Thermophilic Rhodopsin: IMPLICATIONS FOR HIGH THERMAL STABILITY AND OPTOGENETIC FUNCTION

artículo científico publicado en 2016

X-ray structure of beta-carbonic anhydrase from the red alga, Porphyridium purpureum, reveals a novel catalytic site for CO(2) hydration

artículo científico publicado en 2000

ZOO: an automatic data-collection system for high-throughput structure analysis in protein microcrystallography

artículo científico publicado en 2019

Lista de obras de M Yamamoto

A large pocket structure surrounding the catalytic center in the BCG protein from Mycobacterium tuberculosis

A large-area CMOS imager as an X-ray detector for synchrotron radiation experiments.

A nearly on-axis spectroscopic system for simultaneously measuring UV-visible absorption and X-ray diffraction in the SPring-8 structural genomics beamline

A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions

A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method

An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography

An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser

An unprecedented dioxygen species revealed by serial femtosecond rotation crystallography in copper nitrite reductase.

An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures

Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.

Beamline Scheduling Software: administration software for automatic operation of the RIKEN structural genomics beamlines at SPring-8.

Blue Light-excited Light-Oxygen-Voltage-sensing Domain 2 (LOV2) Triggers a Rearrangement of the Kinase Domain to Induce Phosphorylation Activity in Arabidopsis Phototropin1

Blue-light excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis

Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.

Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography

Cell-free methods to produce structurally intact mammalian membrane proteins.

Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96 ⬇️

Coherent X-Ray Diffraction Imaging of Chloroplasts from Cyanidioschyzon merolae by Using X-Ray Free Electron Laser

Coherent diffraction imaging analysis of shape-controlled nanoparticles with focused hard X-ray free-electron laser pulses.

Common structural features of toxic intermediates from α-synuclein and GroES fibrillogenesis detected using cryogenic coherent X-ray diffraction imaging.

Computer-controlled liquid-nitrogen drizzling device for removing frost from cryopreserved crystals

Critical Roles of Interactions among Switch I-preceding Residues and between Switch II and Its Neighboring α-Helix in Conformational Dynamics of the GTP-bound Ras Family Small GTPases ⬇️

Cryocrystallography of 3-Isopropylmalate dehydrogenase from Thermus thermophilus and its chimeric enzyme

Crystal Structure of OXA-58 with the Substrate-Binding Cleft in a Closed State: Insights into the Mobility and Stability of the OXA-58 Structure

Crystal Structures of Human Orexin 2 Receptor Bound to the Subtype-Selective Antagonist EMPA.

Crystal structure of H2-proteinase from the venom of Trimeresurus flavoviridis

Crystal structure of M-Ras reveals a GTP-bound "off" state conformation of Ras family small GTPases.

Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases

Crystal structure of a bacterial homologue of SWEET transporters.

Crystal structure of a family 80 chitosanase from Mitsuaria chitosanitabida.

Crystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

Crystal structure of rhodopsin: A G protein-coupled receptor

Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida

Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor

Crystal structures of the human adiponectin receptors

Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants

Crystallization and preliminary X-ray analyses of quaternary, ternary and binary protein-DNA complexes with involvement of AML1/Runx-1/CBFalpha Runt domain, CBFbeta and the C/EBPbeta bZip region

Crystallization and preliminary X-ray analysis of the stress-response PPM phosphatase RsbX from Bacillus subtilis

Crystallization and preliminary X-ray crystallographic analysis of Thermus thermophilus transcription elongation complex bound to Gfh1.

Crystallization and preliminary X-ray diffraction analysis [correction of anaylsis] of the LOV1 domains of phototropin 1 and 2 from Arabidopsis thaliana.

Crystals of ternary protein-DNA complexes composed of DNA-binding domains of c-Myb or v-Myb, C/EBPalpha or C/EBPbeta and tom-1A promoter fragment

Curved EFC/F-BAR-domain dimers are joined end to end into a filament for membrane invagination in endocytosis

DeepCentering: fully automated crystal centering using deep learning for macromolecular crystallography

Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL

Development of SPACE-II for rapid sample exchange at SPring-8 macromolecular crystallography beamlines

Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography

Development of an online UV-visible microspectrophotometer for a macromolecular crystallography beamline

Diffraction apparatus and procedure in tomography X-ray diffraction imaging for biological cells at cryogenic temperature using synchrotron X-ray radiation

Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo-electron microscopy

Dose dependence of radiation damage for protein crystals studied at various X-ray energies.

Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

Fast microtomography using bright monochromatic x-rays

IDATEN and G-SITENNO: GUI-assisted software for coherent X-ray diffraction imaging experiments and data analyses at SACLA.

In silico discovery of small-molecule Ras inhibitors that display antitumor activity by blocking the Ras-effector interaction

Interaction and stoichiometry of the peripheral stalk subunits NtpE and NtpF and the N-terminal hydrophilic domain of NtpI of Enterococcus hirae V-ATPase.

Interleukin-6 deficient mice are protected from bone loss caused by estrogen depletion

KAMO: towards automated data processing for microcrystals.

KOTOBUKI-1 apparatus for cryogenic coherent X-ray diffraction imaging

Light-induced conformational changes of LOV1 (light oxygen voltage-sensing domain 1) and LOV2 relative to the kinase domain and regulation of kinase activity in Chlamydomonas phototropin.

Long-wavelength native-SAD phasing: opportunities and challenges

Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays

Mail-in data collection at SPring-8 protein crystallography beamlines

Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II

Mechanism of c-Myb-C/EBP beta cooperation from separated sites on a promoter

Mechanism of metal activation of human hematopoietic prostaglandin D synthase

Micro-crystallography comes of age.

Molecular basis of ligand recognition and transport by glucose transporters

Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses

Post-Transcriptional Regulator Hfq Binds Catalase HPII: Crystal Structure of the Complex

Preliminary X-ray crystallographic study of glucose dehydrogenase from Thermus thermophilus HB8

Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions

Protein microcrystallography using synchrotron radiation

Purification, crystallization and preliminary X-ray diffraction analysis of the Kelch-like motif region of mouse Keap1

SPring-8 BL41XU, a high-flux macromolecular crystallography beamline.

Sagittal focusing of synchrotron radiation X-rays using a winged crystal

Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses

Small-angle X-ray scattering analysis reveals the ATP-bound monomeric state of the ATPase domain from the homodimeric MutL endonuclease, a GHKL phosphotransferase superfamily protein