Lista de obras - Burak Erman - Dominio Público Uruguay

A comparative molecular dynamics study of methylation state specificity of JMJD2A.

artículo científico publicado en 2011

A computational model for controlling conformational cooperativity and function in proteins

scientific article published on 25 August 2018

A fast approximate method of identifying paths of allosteric communication in proteins ⬇️

artículo científico publicado el 20 de abril de 2013

Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding

artículo científico publicado en 2009

Anharmonicity, mode-coupling and entropy in a fluctuating native protein

artículo científico publicado en 2010

Binding Stability of Peptides on Major Histocompatibility Complex Class I Proteins: Role of Entropy and Dynamics

artículo científico publicado en 2017

Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions

artículo científico publicado en 2017

Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function.

artículo científico publicado en 1999

Computational and experimental investigation of DNA repair protein photolyase interactions with low molecular weight drugs.

artículo científico publicado en 2013

Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins.

artículo científico publicado en 2007

Conformational energies and entropies of peptides, and the peptide-protein binding problem.

artículo científico publicado en 2009

Conformational transitions in the Ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model

artículo científico publicado en 2014

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.

artículo científico publicado en 2010

Determination of pair-wise inter-residue interaction forces from folding pathways and their implementation in coarse-grained folding prediction.

artículo científico publicado en 2009

Effects of ligand binding upon flexibility of proteins.

artículo científico publicado en 2015

Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations.

artículo científico publicado en 1997

Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin

artículo científico publicado en 2017

Eugene Guth

biographical article published in 1991

Folding dynamics of proteins from denatured to native state: principal component analysis.

artículo científico publicado en 2004

Identification of ligand binding sites of proteins using the Gaussian Network Model

artículo científico publicado en 2011

MATHEMATICAL MODELING OF BEHÇET'S DISEASE: A DYNAMICAL SYSTEMS APPROACH

Minimum energy configurations of the 2-dimensional HP-model of proteins by self-organizing networks

artículo científico publicado en 2002

Mode coupling points to functionally important residues in myosin II

artículo científico publicado en 2014

Molecular dynamics simulations provide molecular insights into the role of HLA-B51 in Behçet's disease pathogenesis

artículo científico publicado en 2020

Molecular recognition of H3/H4 histone tails by the tudor domains of JMJD2A: a comparative molecular dynamics simulations study

artículo científico publicado en 2011

Optimum folding pathways of proteins: their determination and properties.

artículo científico publicado en 2006

Predicting important residues and interaction pathways in proteins using Gaussian Network Model: binding and stability of HLA proteins

artículo científico publicado en 2010

Predicting most probable conformations of a given peptide sequence in the random coil state.

artículo científico publicado en 2012

Prediction of binding sites in receptor-ligand complexes with the Gaussian Network Model

artículo científico publicado en 2008

Prediction of optimal folding routes of proteins that satisfy the principle of lowest entropy loss: dynamic contact maps and optimal control

artículo científico publicado en 2010

Quasi-harmonic analysis of mode coupling in fluctuating native proteins

scientific article published on 26 October 2010

Quasi-harmonic fluctuations of two bound peptides

artículo científico publicado en 2012

Relating the Structure of HIV-1 Reverse Transcriptase to Its Processing Step.

artículo científico publicado en 2000

Relationships between amino acid sequence and backbone torsion angle preferences.

artículo científico publicado en 2004

Relationships between ligand binding sites, protein architecture and correlated paths of energy and conformational fluctuations ⬇️

artículo científico publicado el 10 de agosto de 2011

Simulation of temporal stochastic phenomena in electronic and biological systems: A comparative review, examples and synergies

article

Statistical thermodynamics of residue fluctuations in native proteins.

artículo científico publicado en 2009

The elastic net algorithm and protein structure prediction.

artículo científico publicado en 2002

The gaussian network model: precise prediction of residue fluctuations and application to binding problems

artículo científico publicado en 2006

The introduction of hydrogen bond and hydrophobicity effects into the rotational isomeric states model for conformational analysis of unfolded peptides.

artículo científico publicado en 2009

Turkey must end violent response to protests

artículo científico publicado en 2013

Understanding the recognition of protein structural classes by amino acid composition ⬇️

artículo científico publicado el 1 de octubre de 1997

VitAL: Viterbi algorithm for de novo peptide design

artículo científico publicado en 2010

Lista de obras de Burak Erman

A comparative molecular dynamics study of methylation state specificity of JMJD2A.

A computational model for controlling conformational cooperativity and function in proteins

A fast approximate method of identifying paths of allosteric communication in proteins ⬇️

Analysis of correlations between energy and residue fluctuations in native proteins and determination of specific sites for binding

Anharmonicity, mode-coupling and entropy in a fluctuating native protein

Binding Stability of Peptides on Major Histocompatibility Complex Class I Proteins: Role of Entropy and Dynamics

Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions

Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function.

Computational and experimental investigation of DNA repair protein photolyase interactions with low molecular weight drugs.

Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins.

Conformational energies and entropies of peptides, and the peptide-protein binding problem.

Conformational transitions in the Ramachandran space of amino acids using the dynamic rotational isomeric state (DRIS) model

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.

Determination of pair-wise inter-residue interaction forces from folding pathways and their implementation in coarse-grained folding prediction.

Effects of ligand binding upon flexibility of proteins.

Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations.

Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin

Eugene Guth

Folding dynamics of proteins from denatured to native state: principal component analysis.

Identification of ligand binding sites of proteins using the Gaussian Network Model

MATHEMATICAL MODELING OF BEHÇET'S DISEASE: A DYNAMICAL SYSTEMS APPROACH

Minimum energy configurations of the 2-dimensional HP-model of proteins by self-organizing networks

Mode coupling points to functionally important residues in myosin II

Molecular dynamics simulations provide molecular insights into the role of HLA-B51 in Behçet's disease pathogenesis

Molecular recognition of H3/H4 histone tails by the tudor domains of JMJD2A: a comparative molecular dynamics simulations study

Optimum folding pathways of proteins: their determination and properties.

Predicting important residues and interaction pathways in proteins using Gaussian Network Model: binding and stability of HLA proteins

Predicting most probable conformations of a given peptide sequence in the random coil state.

Prediction of binding sites in receptor-ligand complexes with the Gaussian Network Model

Prediction of optimal folding routes of proteins that satisfy the principle of lowest entropy loss: dynamic contact maps and optimal control

Quasi-harmonic analysis of mode coupling in fluctuating native proteins

Quasi-harmonic fluctuations of two bound peptides

Relating the Structure of HIV-1 Reverse Transcriptase to Its Processing Step.

Relationships between amino acid sequence and backbone torsion angle preferences.

Relationships between ligand binding sites, protein architecture and correlated paths of energy and conformational fluctuations ⬇️

Simulation of temporal stochastic phenomena in electronic and biological systems: A comparative review, examples and synergies

Statistical thermodynamics of residue fluctuations in native proteins.

The elastic net algorithm and protein structure prediction.

The gaussian network model: precise prediction of residue fluctuations and application to binding problems

The introduction of hydrogen bond and hydrophobicity effects into the rotational isomeric states model for conformational analysis of unfolded peptides.

Turkey must end violent response to protests

Understanding the recognition of protein structural classes by amino acid composition ⬇️

VitAL: Viterbi algorithm for de novo peptide design