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Lista de obras de Jean Armengaud

"You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions

artículo científico publicado en 2015

4-Demethylwyosine synthase from Pyrococcus abyssi is a radical-S-adenosyl-L-methionine enzyme with an additional [4Fe-4S](+2) cluster that interacts with the pyruvate co-substrate

artículo científico publicado en 2012

A comparative proteomic approach to better define Deinococcus nucleoid specificities.

artículo científico publicado en 2012

A novel -2Fe-2S- ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase

artículo científico publicado en 1998

A perfect genome annotation is within reach with the proteomics and genomics alliance.

artículo científico publicado en 2009

A role for GPN-loop GTPase yGPN1 in sister chromatid cohesion ⬇️

artículo científico publicado el 1 de junio de 2011

A second [2Fe-2S] ferredoxin from Sphingomonas sp. Strain RW1 can function as an electron donor for the dioxin dioxygenase.

artículo científico publicado en 2000

Addition of a class IIS enzyme site in the mutagenic primer to improve two-step PCR-based targeted mutagenesis.

artículo científico publicado en 1993

Advanced Proteomics as a Powerful Tool for Studying Toxins of Human Bacterial Pathogens

scientific article published on 04 October 2019

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti

artículo científico publicado en 2009

Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics.

artículo científico publicado en 2011

Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395

artículo científico publicado en 2014

Assessing the ratio of Bacillus spores and vegetative cells by shotgun proteomics

article

Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum: A physiological and ecotoxicological study

artículo científico publicado en 2017

Assessment of solvent residues accessibility using three Sulfo-NHS-biotin reagents in parallel: application to footprint changes of a methyltransferase upon binding its substrate.

artículo científico publicado en 2008

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

artículo científico publicado en 2020

BMP-1 disrupts cell adhesion and enhances TGF-β activation through cleavage of the matricellular protein thrombospondin-1

scientific article published on 07 July 2020

Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature

artículo científico publicado en 2020

Bioactive Potential of Extracts of Labrenzia aggregata Strain USBA 371, a Halophilic Bacterium Isolated from a Terrestrial Source

artículo científico publicado en 2020

C-terminal proteolysis of the collagen VI α3 chain by BMP-1 and proprotein convertase(s) releases endotrophin in fragments of different sizes

scientific article published on 25 July 2019

Characterization of a 2[4Fe-4S] ferredoxin obtained by chemical insertion of the Fe-S clusters into the apoferredoxin II from Rhodobacter capsulatus.

artículo científico publicado en 1995

Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: evidence for their involvement in catechol dioxygenase reactivation.

artículo científico publicado en 2000

Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71

artículo científico publicado en 2001

Clinical implications of recent advances in proteogenomics.

artículo científico publicado en 2015

Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum.

artículo científico publicado en 2019

Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host

artículo científico publicado en 2020

Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation

scientific article published on 21 April 2019

Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria

artículo científico publicado en 2011

Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium

artículo científico publicado en 2019

Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage.

artículo científico

Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria

artículo científico publicado en 2017

Contributors

Coupling caging and proteomics on the European flounder (Platichthys flesus) to assess the estuarine water quality at micro scale

scientific article published on 05 August 2019

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

artículo científico publicado en 2021

Data for comparative proteomics of ovaries from five non-model, crustacean amphipods.

artículo científico publicado en 2015

De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups

artículo científico publicado en 2019

Deciphering Black Extrinsic Tooth Stain Composition in Children Using Metaproteomics

artículo científico publicado en 2022

Deciphering structure and topology of conserved COG2042 orphan proteins

artículo científico publicado en 2005

Deciphering the interactions between the Bacillus cereus linear plasmid, pBClin15, and its host by high-throughput comparative proteomics

artículo científico publicado en 2016

Defining Diagnostic Biomarkers Using Shotgun Proteomics and MALDI-TOF Mass Spectrometry.

artículo científico publicado en 2017

Determination of estrogen presence in water by SPR using estrogen receptor dimerization.

artículo científico publicado en 2007

Dichloromethane Degradation Pathway from Unsequenced <i>Hyphomicrobium</i> sp. MC8b Rapidly Explored by Pan-Proteomics

artículo científico publicado en 2020

Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core

artículo científico publicado en 2020

Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil

artículo científico publicado en 2017

Draft genome sequence of Citreicella aestuarii strain 357, a member of the Roseobacter clade isolated without xenobiotic pressure from a petroleum-polluted beach.

artículo científico publicado en 2012

Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods

artículo científico publicado en 2017

Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment

scientific article published on 06 December 2018

Emerin self-assembly mechanism: role of the LEM domain.

artículo científico publicado en 2016

Estimating relative biomasses of organisms in microbiota using "phylopeptidomics"

scientific article published on 06 March 2020

Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN.

artículo científico publicado en 2013

Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry

artículo científico publicado en 2019

Exoproteomics of Pathogens: Analysis of Toxins and Other Virulence Factors by Proteomics.

artículo científico publicado en 2017

Exoproteomics: exploring the world around biological systems ⬇️

artículo científico publicado el 1 de octubre de 2012

Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.

artículo científico publicado en 2010

Experimental separation steps influence the protein content of corona around mesoporous silica nanoparticles.

artículo científico publicado en 2017

Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product

artículo científico publicado en 2005

First Isolation and Characterization of Bacteria from the Core’s Cooling Pool of an Operating Nuclear Reactor

artículo científico publicado en 2023

From shotgun to targeted proteomics: rapid Scout-MRM assay development for monitoring potential immunomarkers in Dreissena polymorpha

artículo científico publicado en 2020

Functional distinctness in the exoproteomes of marine Synechococcus

artículo científico publicado en 2015

Gammarids as Reference Species for Freshwater Monitoring

artículo científico publicado en 2015

Genetic Analysis of Dioxin Dioxygenase of Sphingomonas sp. Strain RW1: Catabolic Genes Dispersed on the Genome ⬇️

artículo científico publicado el 1 de agosto de 1998

Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.

artículo científico publicado en 2016

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.

artículo científico publicado en 2012

High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum

artículo científico publicado en 2016

High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: grasping complex toxicity with a great depth of field

artículo científico publicado en 2015

Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae.

artículo científico publicado en 2017

Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi.

artículo científico publicado en 2003

Identity elements required for enzymatic formation of N2,N2-dimethylguanosine from N2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA.

artículo científico publicado en 2006

Implementation of meiosis prophase I programme requires a conserved retinoid-independent stabilizer of meiotic transcripts

scientific journal article

Improving the quality of genome, protein sequence, and taxonomy databases: a prerequisite for microbiome meta-omics 2.0.

artículo científico publicado en 2015

In Vino Veritas: An Invitation for Ambitious, Collaborative Proteogenomics Campaigns on Plant and Animal Models

artículo científico publicado en 2017

In vitro assessment of cobalt oxide particle toxicity: identifying and circumventing interference.

artículo científico publicado en 2013

In vivo acetylation of HMG1 protein enhances its binding affinity to distorted DNA structures.

artículo científico

In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.

artículo científico publicado en 2010

Low doses of gamma-irradiation induce an early bystander effect in zebrafish cells which is sufficient to radioprotect cells

artículo científico publicado en 2014

Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation

artículo científico publicado en 2017

Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.

artículo científico publicado en 2013

Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation

artículo científico publicado en 2013

Mass spectrometry for the detection of bioterrorism agents: from environmental to clinical applications

artículo científico publicado en 2016

Methionine Residues in Exoproteins and Their Recycling by Methionine Sulfoxide Reductase AB Serve as an Antioxidant Strategy in Bacillus cereus

artículo científico publicado en 2017

Microbiology and proteomics, getting the best of both worlds! ⬇️

artículo científico publicado el 19 de junio de 2012

Microbiomes - embracing complexity

artículo científico publicado en 2015

Molecular Characterization of Fdx1, a Putidaredoxin‐Type [2Fe‐2S] Ferredoxin Able to Transfer Electrons to the Dioxin Dioxygenase of Sphingomonas sp. RW1 ⬇️

artículo científico publicado el 1 de agosto de 1997

Multiple phosphorylable sites in the Zaire Ebolavirus nucleoprotein evidenced by high resolution tandem mass spectrometry

artículo científico publicado en 2012

Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry.

artículo científico publicado en 2017

N- and O-acetylation of threonine residues in the context of proteomics

N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography

artículo científico publicado en 2014

N-terminomics and proteogenomics, getting off to a good start

artículo científico

Next-generation proteomics faces new challenges in environmental biotechnology.

artículo científico publicado en 2016

Next-generation proteomics: toward customized biomarkers for environmental biomonitoring

artículo científico publicado en 2014

Non-model organisms, a species endangered by proteogenomics.

artículo científico publicado en 2014

Nutrient recycling facilitates long-term stability of marine microbial phototroph-heterotroph interactions

artículo científico publicado en 2017

Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value

artículo científico publicado en 2010

OhrRA functions as a redox-responsive system controlling toxinogenesis in Bacillus cereus.

artículo científico publicado en 2013

Omics of the early molecular dialogue between Frankia alni and Alnus glutinosa and the cellulase synton

scientific article published on 27 March 2019

Organ-oriented proteogenomics functional atlas of three aquatic invertebrate sentinel species

artículo científico publicado en 2023

Ovary and embryo proteogenomic dataset revealing diversity of vitellogenins in the crustacean Gammarus fossarum

scientific article published on 28 July 2016

Overexpression in Escherichia coli of the fdxA gene encoding Rhodobacter capsulatus ferredoxin II

artículo científico publicado en 1995

Oxidative DNA Damage and Repair in the Radioresistant Archaeon Thermococcus gammatolerans.

artículo científico publicado en 2016

Periplasmic Bacterial Biomineralization of Copper Sulfide Nanoparticles

artículo científico publicado en 2022

Post-translational methylations of the archaeal Mre11:Rad50 complex throughout the DNA damage response.

artículo científico publicado en 2016

Power of positive thinking in quantitative proteomics

artículo científico publicado en 2015

PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus radiodurans Bacteria

artículo científico publicado en 2016

Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans

artículo científico publicado en 2015

Proteases as Secreted Exoproteins in Mycoplasmas from Ruminant Lungs and Their Impact on Surface-Exposed Proteins

artículo científico publicado en 2019

Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter

artículo científico publicado en 2020

Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1.

artículo científico publicado en 2017

Proteogenomic biomarkers for identification of Francisella species and subspecies by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry

artículo científico publicado en 2014

Proteogenomic definition of biomarkers for the large Roseobacter clade and application for a quick screening of new environmental isolates.

artículo científico publicado en 2013

Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring.

artículo científico publicado en 2013

Proteogenomic insights into the core-proteome of female reproductive tissues from crustacean amphipods.

artículo científico publicado en 2015

Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants.

artículo científico publicado en 2017

Proteogenomics for environmental microbiology.

artículo científico

Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods

artículo científico publicado en 2014

Proteome data to explore the impact of pBClin15 on Bacillus cereus ATCC 14579.

artículo científico publicado en 2016

Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579.

artículo científico publicado en 2014

Proteomic insights into the lifestyle of an environmentally relevant marine bacterium

artículo científico publicado en 2011

Proteomic investigation of male Gammarus fossarum, a freshwater crustacean, in response to endocrine disruptors

artículo científico publicado en 2014

Proteomics data for characterizing , an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant

article

Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors

artículo científico publicado en 2015

Proteomics meets blue biotechnology: a wealth of novelties and opportunities

artículo científico publicado en 2014

Proteomics of the Roseobacter clade, a window to the marine microbiology landscape.

artículo científico

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons

artículo científico publicado en 2009

Quick microbial molecular phenotyping by differential shotgun proteomics

artículo científico publicado en 2020

RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti

artículo científico publicado en 2014

RNA-binding proteins are a major target of silica nanoparticles in cell extracts

artículo científico publicado en 2016

Reannotation of Genomes by Means of Proteomics Data.

artículo científico publicado en 2016

Recombinant expression of the fdxD gene of Rhodobacter capsulatus and characterization of its product, a [2Fe-2S] ferredoxin.

artículo científico publicado en 1994

ResDE-dependent regulation of enterotoxin gene expression in Bacillus cereus: evidence for multiple modes of binding for ResD and interaction with Fnr.

artículo científico publicado en 2009

Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy.

artículo científico publicado en 2010

Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory

artículo científico publicado en 2013

Rio Tinto as a niche for acidophilus enzymes of industrial relevance

artículo científico publicado en 2023

Roadmap for naming uncultivated Archaea and Bacteria

artículo científico publicado en 2020

Salt Stress Induced Changes in the Exoproteome of the Halotolerant Bacterium Tistlia consotensis Deciphered by Proteogenomics.

artículo científico publicado en 2015

Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data

artículo científico publicado en 2020

Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus

artículo científico publicado en 2012

Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild

scientific article published on 12 October 2019

Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation by Sphingomonas wittichii RW1.

artículo científico publicado en 2013

Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes

artículo científico publicado en 2015

Striking against bioterrorism with advanced proteomics and reference methods.

artículo científico publicado en 2016

Structural insights into a new homodimeric self-activated GTPase family

artículo científico publicado en 2007

Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction.

artículo científico publicado en 2006

Subcellular localization and interaction network of the mRNA decay activator Pat1 upon UV stress

artículo científico publicado en 2013

THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain

artículo científico publicado en 2006

Taking the Shortcut for High-Throughput Shotgun Proteomic Analysis of Bacteria

artículo científico publicado en 2014

The Brucella suis IbpA heat-shock chaperone is not required for virulence or for expression of the VirB type IV secretion system VirB8 protein.

artículo científico publicado en 2014

The Deinococcus radiodurans DR1245 Protein, a DdrB Partner Homologous to YbjN Proteins and Reminiscent of Type III Secretion System Chaperones

artículo científico publicado en 2013

The Importance Of Naturally Attenuated Sars-Cov-2 In The Fight Against Covid-19

scientific article published on 28 April 2020

The abundant and essential HU proteins in Deinococcus deserti and Deinococcus radiodurans are translated from leaderless mRNA.

artículo científico publicado en 2015

The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments

artículo científico publicado en 2019

The plasma membrane-associated cation-binding protein PCaP1 of Arabidopsis thaliana is a uranyl-binding protein

artículo científico publicado en 2023

The proteomics contribution to the counter-bioterrorism toolbox in the post-COVID-19 era

scientific article published on 09 September 2020

The reductase RedA2 of the multi‐component dioxin dioxygenase system of Sphingomonas sp. RW1 is related to class‐I cytochrome P450‐type reductases ⬇️

artículo científico publicado el 15 de abril de 1998

The species origin of the serum in the culture medium influences the in vitro toxicity of silica nanoparticles to HepG2 cells.

artículo científico publicado en 2017

The timeline of corona formation around silica nanocarriers highlights the role of the protein interactome

artículo científico publicado en 2016

Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation.

artículo científico publicado en 2015

Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline

artículo científico publicado en 2016

Titanium Dioxide Nanoparticles Alter the Cellular Phosphoproteome in A549 Cells

artículo científico publicado en 2020

Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach

artículo científico publicado en 2016

Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot

scientific article published on 01 October 2019

methionine sulfoxide reductase P reduces ‑ and ‑diastereomers of methionine sulfoxide from a broad‑spectrum of protein substrates

artículo científico publicado en 2018

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