Lista de obras - Oliver Rupp - Dominio Público Uruguay

A reference genome of the Chinese hamster based on a hybrid assembly strategy

article

A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies.

artículo científico publicado en 2017

ADAR1 Is Required for Dendritic Cell Subset Homeostasis and Alveolar Macrophage Function

artículo científico publicado en 2019

An Evolutionary Framework for Carpel Developmental Control Genes.

artículo científico publicado en 2016

Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome.

artículo científico publicado en 2017

Binning enables efficient host genome reconstruction in cnidarian holobionts

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology

artículo científico publicado en 2003

Chinese hamster genome sequenced from sorted chromosomes

artículo científico publicado en 2013

Complete Genome Sequence of the Fruiting Myxobacterium Melittangium boletus DSM 14713.

artículo científico publicado en 2017

Complete Genome Sequence of the Fruiting Myxobacterium Myxococcus macrosporus Strain DSM 14697, Generated by PacBio Sequencing

artículo científico publicado en 2017

Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora

artículo científico publicado en 2005

Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid

article by Daniel Wibberg et al published August 2011 in Journal of Biotechnology

Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines

artículo científico publicado en 2012

Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines

artículo científico publicado en 2014

De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite

artículo científico publicado en 2015

Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite

artículo científico publicado en 2011

Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R. solani AG1-IA, AG1-IB, AG3 and AG8 Isolates

artículo científico publicado en 2015

Draft Genome Sequence of the Fruiting Myxobacterium Nannocystis exedens DSM 71.

artículo científico publicado en 2017

Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3.

artículo científico publicado en 2017

Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670

article by Daniel Wibberg et al published March 2016 in Journal of Biotechnology

EMMA: a platform for consistent storage and efficient analysis of microarray data

artículo científico publicado en 2003

Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.

artículo científico publicado en 2012

Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells

artículo científico publicado en 2013

Evolution and development of fruits of Erycina pusilla and other orchid species

artículo científico publicado en 2023

First CpG island microarray for genome-wide analyses of DNA methylation in Chinese hamster ovary cells: new insights into the epigenetic answer to butyrate treatment.

artículo científico publicado en 2013

GenDB--an open source genome annotation system for prokaryote genomes

artículo científico publicado en 2003

Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes

artículo científico publicado en 2016

Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities

artículo científico publicado en 2012

Genome sequence of the endophytic strain Enterobacter sp. J49, a potential biofertilizer for peanut and maize

artículo científico publicado en 2018

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

artículo científico publicado en 2006

Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system

artículo científico publicado en 2015

Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence

artículo científico publicado en 2005

Integrative analysis of DNA methylation and gene expression in butyrate-treated CHO cells.

artículo científico publicado en 2016

Listeria monocytogenes Induces a Virulence-Dependent microRNA Signature That Regulates the Immune Response in Galleria mellonella

artículo científico publicado en 2017

Massive parallel insertion site sequencing of an arrayed Sinorhizobium meliloti signature-tagged mini-Tn 5 transposon mutant library

artículo científico publicado en 2017

Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA.

artículo científico publicado en 2019

Multidimension cultivation analysis by standard and omics methods for optimization of therapeutics production.

artículo científico publicado en 2013

Next Generation Sequencing Identifies Five Major Classes of Potentially Therapeutic Enzymes Secreted by Lucilia sericata Medical Maggots

artículo científico publicado en 2016

Next-generation sequencing of the CHO cell transcriptome

artículo científico publicado en 2011

Pathogen recognition in compatible plant-microbe interactions.

artículo científico publicado en 2017

Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana

artículo científico publicado en 2013

Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production

artículo científico publicado en 2013

Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.

artículo científico publicado en 2017

Seed Plant-Specific Gene Lineages Involved in Carpel Development

artículo científico publicado en 2017

The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells.

artículo científico publicado en 2015

The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies

artículo científico publicado en 2009

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins

artículo científico publicado en 2003

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

artículo científico publicado en 2013

The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra).

artículo científico publicado en 2013

The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms

artículo científico

Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.).

artículo científico publicado en 2014

Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs).

artículo científico publicado en 2014

Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense)

artículo científico publicado en 2021

Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing

artículo científico publicado en 2011

Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics

artículo científico publicado en 2012

What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches

artículo científico publicado en 2013

Whole-Genome Sequence of the Fruiting Myxobacterium Cystobacter fuscus DSM 52655.

artículo científico publicado en 2017

Lista de obras de Oliver Rupp

A reference genome of the Chinese hamster based on a hybrid assembly strategy

A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies.

ADAR1 Is Required for Dendritic Cell Subset Homeostasis and Alveolar Macrophage Function

An Evolutionary Framework for Carpel Developmental Control Genes.

Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome.

Binning enables efficient host genome reconstruction in cnidarian holobionts

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology

Chinese hamster genome sequenced from sorted chromosomes

Complete Genome Sequence of the Fruiting Myxobacterium Melittangium boletus DSM 14713.

Complete Genome Sequence of the Fruiting Myxobacterium Myxococcus macrosporus Strain DSM 14697, Generated by PacBio Sequencing

Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora

Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid

Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines

Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines

De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite

Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite

Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R. solani AG1-IA, AG1-IB, AG3 and AG8 Isolates

Draft Genome Sequence of the Fruiting Myxobacterium Nannocystis exedens DSM 71.

Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3.

Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670

EMMA: a platform for consistent storage and efficient analysis of microarray data

Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.

Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells

Evolution and development of fruits of Erycina pusilla and other orchid species

First CpG island microarray for genome-wide analyses of DNA methylation in Chinese hamster ovary cells: new insights into the epigenetic answer to butyrate treatment.

GenDB--an open source genome annotation system for prokaryote genomes

Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes

Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities

Genome sequence of the endophytic strain Enterobacter sp. J49, a potential biofertilizer for peanut and maize

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system

Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence

Integrative analysis of DNA methylation and gene expression in butyrate-treated CHO cells.

Listeria monocytogenes Induces a Virulence-Dependent microRNA Signature That Regulates the Immune Response in Galleria mellonella

Massive parallel insertion site sequencing of an arrayed Sinorhizobium meliloti signature-tagged mini-Tn 5 transposon mutant library

Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA.

Multidimension cultivation analysis by standard and omics methods for optimization of therapeutics production.

Next Generation Sequencing Identifies Five Major Classes of Potentially Therapeutic Enzymes Secreted by Lucilia sericata Medical Maggots

Next-generation sequencing of the CHO cell transcriptome

Pathogen recognition in compatible plant-microbe interactions.

Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana

Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production

Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.

Seed Plant-Specific Gene Lineages Involved in Carpel Development

The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells.

The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra).

The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms

Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.).

Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs).

Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense)

Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing

Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics

What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches

Whole-Genome Sequence of the Fruiting Myxobacterium Cystobacter fuscus DSM 52655.