Lista de obras - Gary Xie - Dominio Público Uruguay

A 360-kb interchromosomal duplication of the human HYDIN locus

artículo científico publicado en 2006

Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes

artículo científico publicado en 2011

An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics

artículo científico publicado en 2011

Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids

artículo científico publicado en 2007

Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076

artículo científico publicado en 2011

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

artículo científico publicado en 2012

Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways.

artículo científico publicado en 2009

Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide

artículo científico publicado en 2012

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.

artículo científico publicado en 2010

Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

artículo científico publicado en 2016

Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1.

artículo científico publicado en 2011

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations

artículo científico publicado en 2009

Complete genome sequence of Arthrobacter sp. strain FB24.

artículo científico publicado en 2013

Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00

artículo científico publicado en 2009

Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd.

artículo científico publicado en 2006

Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1.

artículo científico publicado en 2009

Deficiency of BrpB causes major defects in cell division, stress responses and biofilm formation by Streptococcus mutans.

artículo científico publicado en 2013

Dynamics of Streptococcus mutans transcriptome in response to starch and sucrose during biofilm development

artículo científico publicado en 2010

From genus to phylum: large-subunit and internal transcribed spacer rRNA operon regions show similar classification accuracies influenced by database composition

artículo científico publicado en 2013

Genetic diversity within the botulinum neurotoxin-producing bacteria and their neurotoxins.

artículo científico publicado en 2015

Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii

artículo científico publicado en 2007

Genome sequence of Kingella kingae septic arthritis isolate PYKK081.

artículo científico publicado en 2012

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

artículo científico publicado en 2008

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

artículo científico publicado en 2009

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2

artículo científico publicado en 2012

Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes

artículo científico publicado en 2014

Genomics for key players in the N cycle from guinea pigs to the next frontier

scientific article published on January 2011

Hidden Markov Model: a shortest unique representative approach to detect the protein toxins, virulence factors and antibiotic resistance genes

publication published on 30 March 2021

Large direct repeats flank genomic rearrangements between a new clinical isolate of Francisella tularensis subsp. tularensis A1 and Schu S4.

artículo científico publicado en 2010

Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages

artículo científico publicado en 2013

Molecular characterization of a novel botulinum neurotoxin type H gene

artículo científico publicado en 2013

Multidrug-resistant (MDR) Klebsiella pneumoniae clinical isolates: a zone of high heterogeneity (HHZ) as a tool for epidemiological studies

artículo científico publicado en 2012

Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis ⬇️

artículo científico publicado en 2009

Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

artículo científico publicado en 2011

Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis

artículo científico publicado en 2006

Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains

artículo científico publicado en 2009

Recruiting human microbiome shotgun data to site-specific reference genomes

artículo científico publicado en 2014

Saliva microbiomes distinguish caries-active from healthy human populations ⬇️

artículo científico publicado el 30 de junio de 2011

The DNA sequence and comparative analysis of human chromosome 5

artículo científico publicado en 2004

The alternative translational profile that underlies the immune-evasive state of persistence in Chlamydiaceae exploits differential tryptophan contents of the protein repertoire

artículo científico publicado en 2012

The complete genome sequence of Bacillus thuringiensis Al Hakam

artículo científico publicado en 2007

The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).

artículo científico publicado en 2008

The redox-sensing regulator Rex modulates central carbon metabolism, stress tolerance response and biofilm formation by Streptococcus mutans

artículo científico publicado en 2012

The sequence and analysis of duplication-rich human chromosome 16

artículo científico publicado en 2004

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

artículo científico publicado en 2009

Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones

artículo científico publicado en 2016

Lista de obras de Gary Xie

A 360-kb interchromosomal duplication of the human HYDIN locus

Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes

An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics

Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids

Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways.

Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.

Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1.

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations

Complete genome sequence of Arthrobacter sp. strain FB24.

Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00

Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd.

Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1.

Deficiency of BrpB causes major defects in cell division, stress responses and biofilm formation by Streptococcus mutans.

Dynamics of Streptococcus mutans transcriptome in response to starch and sucrose during biofilm development

From genus to phylum: large-subunit and internal transcribed spacer rRNA operon regions show similar classification accuracies influenced by database composition

Genetic diversity within the botulinum neurotoxin-producing bacteria and their neurotoxins.

Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii

Genome sequence of Kingella kingae septic arthritis isolate PYKK081.

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2

Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes

Genomics for key players in the N cycle from guinea pigs to the next frontier

Hidden Markov Model: a shortest unique representative approach to detect the protein toxins, virulence factors and antibiotic resistance genes

Large direct repeats flank genomic rearrangements between a new clinical isolate of Francisella tularensis subsp. tularensis A1 and Schu S4.

Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages

Molecular characterization of a novel botulinum neurotoxin type H gene

Multidrug-resistant (MDR) Klebsiella pneumoniae clinical isolates: a zone of high heterogeneity (HHZ) as a tool for epidemiological studies

Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis ⬇️

Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

Pathogenomic Sequence Analysis of Bacillus cereus and Bacillus thuringiensis Isolates Closely Related to Bacillus anthracis

Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains

Recruiting human microbiome shotgun data to site-specific reference genomes

Saliva microbiomes distinguish caries-active from healthy human populations ⬇️

The DNA sequence and comparative analysis of human chromosome 5

The alternative translational profile that underlies the immune-evasive state of persistence in Chlamydiaceae exploits differential tryptophan contents of the protein repertoire

The complete genome sequence of Bacillus thuringiensis Al Hakam

The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).

The redox-sensing regulator Rex modulates central carbon metabolism, stress tolerance response and biofilm formation by Streptococcus mutans

The sequence and analysis of duplication-rich human chromosome 16

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones