Lista de obras - Alan Christoffels - Dominio Público Uruguay

A comparative analysis of trypanosomatid SNARE proteins.

artículo científico publicado en 2013

A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base.

artículo científico publicado en 1999

A glance at quality score: implication for de novo transcriptome reconstruction of Illumina reads.

artículo científico publicado en 2014

A pan-African pathogen genomics data sharing platform to support disease outbreaks

A population model for the 2017/18 listeriosis outbreak in South Africa

artículo científico publicado en 2020

Accelerating genomics-based surveillance for COVID-19 response in Africa

scientific article published on 18 August 2020

Accessing Biospecimens from the H3Africa Consortium.

artículo científico publicado en 2017

An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench).

artículo científico publicado en 2017

Assessment of the parallelization approach of d2_cluster for high-performance sequence clustering

artículo científico publicado en 2002

Baobab Laboratory Information Management System: Development of an Open-Source Laboratory Information Management System for Biobanking

artículo científico publicado en 2017

COMBAT-TB-NeoDB: fostering tuberculosis research through integrative analysis using graph database technologies

scientific article published on 01 February 2020

COMPARISON OF CORE PROMOTERS IN FUGU RUBRIPES AND HUMAN

Careful governance of African biobanks

scientific article published on 01 January 2020

Cellular and Molecular Targets of Waterbuck Repellent Blend Odors in Antennae of Glossina fuscipes fuscipes Newstead, 1910

scientific article published on 03 June 2020

Challenges of biobanking in South Africa to facilitate indigenous research in an environment burdened with human immunodeficiency virus, tuberculosis, and emerging noncommunicable diseases

artículo científico publicado en 2013

Chemosensory receptors in tsetse flies provide link between chemical and behavioural ecology

artículo científico publicado en 2014

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

artículo científico publicado en 2016

Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools

artículo científico publicado en 2004

Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome

artículo científico publicado en 2006

Computational characterization of Iron metabolism in the Tsetse disease vector, Glossina morsitans: IRE stem-loops

artículo científico publicado en 2016

Computational drug repurposing strategy predicted peptide-based drugs that can potentially inhibit the interaction of SARS-CoV-2 spike protein with its target (humanACE2)

artículo científico publicado en 2021

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

artículo científico publicado en 2016

Correction: Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species

artículo científico publicado en 2018

Correction: Genome-Wide Comparative Analysis of Chemosensory Gene Families in Five Tsetse Fly Species

artículo científico publicado en 2016

Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species

artículo científico publicado en 2018

DAMPD: a manually curated antimicrobial peptide database

artículo científico publicado en 2011

DDEC: Dragon database of genes implicated in esophageal cancer

artículo científico publicado en 2009

DDESC: Dragon database for exploration of sodium channels in human

artículo científico publicado en 2008

DDPC: Dragon Database of Genes associated with Prostate Cancer

artículo científico publicado en 2010

DESTAF: a database of text-mined associations for reproductive toxins potentially affecting human fertility

artículo científico publicado en 2011

Database for exploration of functional context of genes implicated in ovarian cancer

artículo científico publicado en 2008

Dealing with Duplicated Genomes of Teleosts

Designing novel possible kinase inhibitor derivatives as therapeutics against Mycobacterium tuberculosis: An in silico study

artículo científico publicado en 2019

Dragon exploratory system on hepatitis C virus (DESHCV).

artículo científico publicado en 2010

Evaluation of Protein Purification Techniques and Effects of Storage Duration on LC-MS/MS Analysis of Archived FFPE Human CRC Tissues

artículo científico publicado en 2021

Evidence for a common biological pathway linking three Parkinson's disease-causing genes: parkin, PINK1 and DJ-1

artículo científico publicado en 2015

Evolution and Structural Analyses of Glossina morsitans (Diptera; Glossinidae) Tetraspanins.

artículo científico publicado en 2014

Evolutionary genomics of Glossina morsitans immune-related CLIP domain serine proteases and serine protease inhibitors

artículo científico publicado en 2010

Exome sequencing combined with semantic discovery identifies strong disease-associated candidates in a single case of relapsing remitting multiple sclerosis

Expansion mechanisms and functional annotations of hypothetical genes in the rice genome

artículo científico publicado en 2009

Exploration of Scaffolds from Natural Products with Antiplasmodial Activities, Currently Registered Antimalarial Drugs and Public Malarial Screen Data.

artículo científico publicado en 2016

Exploring the Influence of Organizational, Environmental, and Technological Factors on Information Security Policies and Compliance at South African Higher Education Institutions, with a Focus on Implications for Biomedical Research

artículo científico publicado en 2020

Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes

artículo científico publicado en 2004

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

artículo científico publicado en 2004

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

artículo científico publicado en 2022

Genome-Wide Comparative Analysis of Chemosensory Gene Families in Five Tsetse Fly Species

artículo científico publicado en 2016

Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map

artículo científico publicado en 2010

Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment

artículo científico publicado en 2022

Gonad differentiation in zebrafish is regulated by the canonical Wnt signaling pathway.

artículo científico publicado en 2014

HCVpro: hepatitis C virus protein interaction database

artículo científico

Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis

artículo científico publicado en 2003

Human African trypanosomiasis research gets a boost: unraveling the tsetse genome.

artículo científico publicado en 2014

Human Leukocyte Antigen-A, B, C, DRB1, and DQB1 Allele and Haplotype Frequencies in a Subset of 237 Donors in the South African Bone Marrow Registry.

artículo científico publicado en 2018

Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing

artículo científico publicado en 2016

Identification of novel prognostic markers of survival time in high-risk neuroblastoma using gene expression profiles

artículo científico publicado en 2020

In silico repurposing of a Novobiocin derivative for activity against latency associated Mycobacterium tuberculosis drug target nicotinate-nucleotide adenylyl transferase (Rv2421c)

artículo científico publicado en 2021

Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms

artículo científico publicado en 2015

Information security at South African universities—implications for biomedical research

artículo científico publicado en 2020

Inhibiting CDK6 Activity by Quercetin Is an Attractive Strategy for Cancer Therapy

artículo científico publicado en 2020

International glossina genome initiative 2004-2014: a driver for post-genomic era research on the African continent

artículo científico publicado en 2014

MOLECULAR PHYLOGENETIC ANALYSIS: UNDERSTANDING GENOME EVOLUTION

scholarly article published June 2005

Mice and men: their promoter properties

artículo científico publicado en 2006

Molecular modelling and simulation studies of the Mycobacterium tuberculosis multidrug efflux pump protein Rv1258c

artículo científico publicado en 2018

Odorant and gustatory receptors in the tsetse fly Glossina morsitans morsitans

artículo científico publicado en 2014

Prediction of human-Bacillus anthracis protein–protein interactions using multi-layer neural network

artículo científico publicado en 2018

Prioritization of anti-malarial hits from nature: chemo-informatic profiling of natural products with in vitro antiplasmodial activities and currently registered anti-malarial drugs

artículo científico publicado en 2016

Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools

artículo científico publicado en 2021

Research capacity. Enabling the genomic revolution in Africa

artículo científico publicado en 2014

Resistance related metabolic pathways for drug target identification in Mycobacterium tuberculosis

artículo científico publicado en 2016

Selecting a Laboratory Information Management System for Biorepositories in Low- and Middle-Income Countries: The H3Africa Experience and Lessons Learned.

artículo científico publicado en 2017

South African EMBnet Node: AGM2011 report

Structural and functional effects of nucleotide variation on the human TB drug metabolizing enzyme arylamine N-acetyltransferase 1.

artículo científico publicado en 2017

Structure based identification of novel inhibitors against ATP synthase of Mycobacterium tuberculosis: A combined in silico and in vitro study

artículo científico publicado en 2019

TSS seq based core promoter architecture in blood feeding Tsetse fly (Glossina morsitans morsitans) vector of Trypanosomiasis

artículo científico publicado en 2015

Taste and odorant receptors of the coelacanth--a gene repertoire in transition

artículo científico publicado en 2013

Tetraodon genome analysis provides further evidence for whole-genome duplication in the ray-finned fish lineage

article

The African coelacanth genome provides insights into tetrapod evolution

artículo científico publicado en 2013

The COMBAT-TB Workbench: Making Powerful Mycobacterium tuberculosis Bioinformatics Accessible

artículo científico publicado en 2022

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

artículo científico publicado en 2016

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

research article preprint

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

artículo científico publicado en 2022

The genome of woodland strawberry (Fragaria vesca)

artículo científico publicado en 2011

Towards inferring the global movement of beak and feather disease virus

artículo científico publicado en 2013

Transcriptomic Profile of <i>Mycobacterium smegmatis</i> in Response to an Imidazo[1,2-<i>b</i>][1,2,4,5]tetrazine Reveals Its Possible Impact on Iron Metabolism

artículo científico publicado en 2021

Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain

artículo científico publicado en 2008

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

artículo científico publicado en 2002

Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans.

artículo científico publicado en 2017

eVOC: a controlled vocabulary for unifying gene expression data

artículo científico publicado en 2003

Lista de obras de Alan Christoffels

A comparative analysis of trypanosomatid SNARE proteins.

A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base.

A glance at quality score: implication for de novo transcriptome reconstruction of Illumina reads.

A pan-African pathogen genomics data sharing platform to support disease outbreaks

A population model for the 2017/18 listeriosis outbreak in South Africa

Accelerating genomics-based surveillance for COVID-19 response in Africa

Accessing Biospecimens from the H3Africa Consortium.

An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench).

Assessment of the parallelization approach of d2_cluster for high-performance sequence clustering

Baobab Laboratory Information Management System: Development of an Open-Source Laboratory Information Management System for Biobanking

COMBAT-TB-NeoDB: fostering tuberculosis research through integrative analysis using graph database technologies

COMPARISON OF CORE PROMOTERS IN FUGU RUBRIPES AND HUMAN

Careful governance of African biobanks

Cellular and Molecular Targets of Waterbuck Repellent Blend Odors in Antennae of Glossina fuscipes fuscipes Newstead, 1910

Challenges of biobanking in South Africa to facilitate indigenous research in an environment burdened with human immunodeficiency virus, tuberculosis, and emerging noncommunicable diseases

Chemosensory receptors in tsetse flies provide link between chemical and behavioural ecology

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools

Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome

Computational characterization of Iron metabolism in the Tsetse disease vector, Glossina morsitans: IRE stem-loops

Computational drug repurposing strategy predicted peptide-based drugs that can potentially inhibit the interaction of SARS-CoV-2 spike protein with its target (humanACE2)

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Correction: Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species

Correction: Genome-Wide Comparative Analysis of Chemosensory Gene Families in Five Tsetse Fly Species

Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species

DAMPD: a manually curated antimicrobial peptide database

DDEC: Dragon database of genes implicated in esophageal cancer

DDESC: Dragon database for exploration of sodium channels in human

DDPC: Dragon Database of Genes associated with Prostate Cancer

DESTAF: a database of text-mined associations for reproductive toxins potentially affecting human fertility

Database for exploration of functional context of genes implicated in ovarian cancer

Dealing with Duplicated Genomes of Teleosts

Designing novel possible kinase inhibitor derivatives as therapeutics against Mycobacterium tuberculosis: An in silico study

Dragon exploratory system on hepatitis C virus (DESHCV).

Evaluation of Protein Purification Techniques and Effects of Storage Duration on LC-MS/MS Analysis of Archived FFPE Human CRC Tissues

Evidence for a common biological pathway linking three Parkinson's disease-causing genes: parkin, PINK1 and DJ-1

Evolution and Structural Analyses of Glossina morsitans (Diptera; Glossinidae) Tetraspanins.

Evolutionary genomics of Glossina morsitans immune-related CLIP domain serine proteases and serine protease inhibitors

Exome sequencing combined with semantic discovery identifies strong disease-associated candidates in a single case of relapsing remitting multiple sclerosis

Expansion mechanisms and functional annotations of hypothetical genes in the rice genome

Exploration of Scaffolds from Natural Products with Antiplasmodial Activities, Currently Registered Antimalarial Drugs and Public Malarial Screen Data.

Exploring the Influence of Organizational, Environmental, and Technological Factors on Information Security Policies and Compliance at South African Higher Education Institutions, with a Focus on Implications for Biomedical Research

Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

Genome-Wide Comparative Analysis of Chemosensory Gene Families in Five Tsetse Fly Species

Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map

Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment

Gonad differentiation in zebrafish is regulated by the canonical Wnt signaling pathway.

HCVpro: hepatitis C virus protein interaction database

Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis

Human African trypanosomiasis research gets a boost: unraveling the tsetse genome.

Human Leukocyte Antigen-A, B, C, DRB1, and DQB1 Allele and Haplotype Frequencies in a Subset of 237 Donors in the South African Bone Marrow Registry.

Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing

Identification of novel prognostic markers of survival time in high-risk neuroblastoma using gene expression profiles

In silico repurposing of a Novobiocin derivative for activity against latency associated Mycobacterium tuberculosis drug target nicotinate-nucleotide adenylyl transferase (Rv2421c)

Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms

Information security at South African universities—implications for biomedical research

Inhibiting CDK6 Activity by Quercetin Is an Attractive Strategy for Cancer Therapy

International glossina genome initiative 2004-2014: a driver for post-genomic era research on the African continent

MOLECULAR PHYLOGENETIC ANALYSIS: UNDERSTANDING GENOME EVOLUTION

Mice and men: their promoter properties

Molecular modelling and simulation studies of the Mycobacterium tuberculosis multidrug efflux pump protein Rv1258c

Odorant and gustatory receptors in the tsetse fly Glossina morsitans morsitans

Prediction of human-Bacillus anthracis protein–protein interactions using multi-layer neural network

Prioritization of anti-malarial hits from nature: chemo-informatic profiling of natural products with in vitro antiplasmodial activities and currently registered anti-malarial drugs

Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools

Research capacity. Enabling the genomic revolution in Africa

Resistance related metabolic pathways for drug target identification in Mycobacterium tuberculosis

Selecting a Laboratory Information Management System for Biorepositories in Low- and Middle-Income Countries: The H3Africa Experience and Lessons Learned.

South African EMBnet Node: AGM2011 report

Structural and functional effects of nucleotide variation on the human TB drug metabolizing enzyme arylamine N-acetyltransferase 1.

Structure based identification of novel inhibitors against ATP synthase of Mycobacterium tuberculosis: A combined in silico and in vitro study

TSS seq based core promoter architecture in blood feeding Tsetse fly (Glossina morsitans morsitans) vector of Trypanosomiasis

Taste and odorant receptors of the coelacanth--a gene repertoire in transition

Tetraodon genome analysis provides further evidence for whole-genome duplication in the ray-finned fish lineage

The African coelacanth genome provides insights into tetrapod evolution

The COMBAT-TB Workbench: Making Powerful Mycobacterium tuberculosis Bioinformatics Accessible

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt