Lista de obras - Andrey Alexeyenko - Dominio Público Uruguay

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells

scientific article published on 16 September 2020

A fine-needle aspiration-based protein signature discriminates benign from malignant breast lesions

scholarly article by Bo Franzén et al published September 2018 in Molecular Oncology

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

artículo científico publicado en 2014

Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk

artículo científico publicado en 2010

Automatic clustering of orthologs and inparalogs shared by multiple proteomes

artículo científico publicado en 2006

Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD

artículo científico publicado en 2007

Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis

article

Comparative interactomics with Funcoup 2.0.

artículo científico publicado en 2011

Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines

artículo científico publicado en 2012

Confrontation of fibroblasts with cancer cells in vitro: gene network analysis of transcriptome changes and differential capacity to inhibit tumor growth

artículo científico

Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis

artículo científico publicado en 2014

Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity

artículo científico publicado en 2010

Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

artículo científico publicado en 2014

EviNet: a web platform for network enrichment analysis with flexible definition of gene sets.

artículo científico publicado en 2018

Genetic association of sequence variants near AGER/NOTCH4 and dementia

artículo científico publicado en 2011

Genome-wide pathway analysis implicates intracellular transmembrane protein transport in Alzheimer disease.

artículo científico publicado en 2010

Global networks of functional coupling in eukaryotes from comprehensive data integration

artículo científico publicado en 2009

High-throughput in vivo analysis of gene expression in Caenorhabditis elegans

artículo científico publicado en 2007

Identifying and Assessing Interesting Subgroups in a Heterogeneous Population.

artículo científico publicado en 2015

Individualized discovery of rare cancer drivers in global network context

artículo científico publicado en 2022

Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent

artículo científico publicado en 2014

MGclus: network clustering employing shared neighbors

artículo científico publicado en 2013

NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis

artículo científico publicado en 2017

Network analysis of functional genomics data: application to avian sex-biased gene expression.

artículo científico publicado en 2012

Network enrichment analysis: extension of gene-set enrichment analysis to gene networks

artículo científico publicado en 2012

Novel genes and pathways modulated by syndecan-1: implications for the proliferation and cell-cycle regulation of malignant mesothelioma cells

artículo científico publicado en 2012

Overview and comparison of ortholog databases

artículo científico

Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data

scientific article published on 20 February 2019

Protein Expression in Tonsillar and Base of Tongue Cancer and in Relation to Human Papillomavirus (HPV) and Clinical Outcome.

artículo científico publicado en 2018

Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis

scientific article published on 16 December 2019

Protein profiling of fine-needle aspirates reveals subtype-associated immune signatures and involvement of chemokines in breast cancer

artículo científico publicado en 2019

Robust and clinically relevant prediction of response to anti-cancer drugs via network integration of molecular profiles

Robust derivation of transplantable dopamine neurons from human pluripotent stem cells by timed retinoic acid delivery

artículo científico publicado en 2022

Spatially resolved transcriptome profiling in model plant species

artículo científico publicado en 2017

Statistical assessment of crosstalk enrichment between gene groups in biological networks ⬇️

artículo científico publicado en 2013

The Norway spruce genome sequence and conifer genome evolution

artículo científico publicado en 2013

Lista de obras de Andrey Alexeyenko

A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells

A fine-needle aspiration-based protein signature discriminates benign from malignant breast lesions

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk

Automatic clustering of orthologs and inparalogs shared by multiple proteomes

Calcyon mRNA expression in the frontal-striatal circuitry and its relationship to vesicular processes and ADHD

Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis

Comparative interactomics with Funcoup 2.0.

Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines

Confrontation of fibroblasts with cancer cells in vitro: gene network analysis of transcriptome changes and differential capacity to inhibit tumor growth

Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis

Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity

Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

EviNet: a web platform for network enrichment analysis with flexible definition of gene sets.

Genetic association of sequence variants near AGER/NOTCH4 and dementia

Genome-wide pathway analysis implicates intracellular transmembrane protein transport in Alzheimer disease.

Global networks of functional coupling in eukaryotes from comprehensive data integration

High-throughput in vivo analysis of gene expression in Caenorhabditis elegans

Identifying and Assessing Interesting Subgroups in a Heterogeneous Population.

Individualized discovery of rare cancer drivers in global network context

Inhibition of tumor cell proliferation and motility by fibroblasts is both contact and soluble factor dependent

MGclus: network clustering employing shared neighbors

NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis

Network analysis of functional genomics data: application to avian sex-biased gene expression.

Network enrichment analysis: extension of gene-set enrichment analysis to gene networks

Novel genes and pathways modulated by syndecan-1: implications for the proliferation and cell-cycle regulation of malignant mesothelioma cells

Overview and comparison of ortholog databases

Prediction of response to anti-cancer drugs becomes robust via network integration of molecular data

Protein Expression in Tonsillar and Base of Tongue Cancer and in Relation to Human Papillomavirus (HPV) and Clinical Outcome.

Protein profiling and network enrichment analysis in individuals before and after the onset of rheumatoid arthritis

Protein profiling of fine-needle aspirates reveals subtype-associated immune signatures and involvement of chemokines in breast cancer

Robust and clinically relevant prediction of response to anti-cancer drugs via network integration of molecular profiles

Robust derivation of transplantable dopamine neurons from human pluripotent stem cells by timed retinoic acid delivery

Spatially resolved transcriptome profiling in model plant species

Statistical assessment of crosstalk enrichment between gene groups in biological networks ⬇️

The Norway spruce genome sequence and conifer genome evolution