Lista de obras - Federico Zambelli - Dominio Público Uruguay

A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors

artículo científico publicado en 2016

A perspective of promoter architecture from the CCAAT box.

artículo científico publicado en 2009

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing

artículo científico publicado en 2011

An acetylation-mono-ubiquitination switch on lysine 120 of H2B.

artículo científico publicado en 2011

Assessment of orthologous splicing isoforms in human and mouse orthologous genes

artículo científico publicado en 2010

CoVaCS: a consensus variant calling system

artículo científico publicado en 2018

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data

scientific article published on 03 December 2019

Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets

artículo científico publicado en 2012

De novo secondary structure motif discovery using RNAProfile.

artículo científico publicado en 2015

Epigenetic signatures of stress adaptation and flowering regulation in response to extended drought and recovery in Zea mays

scientific article published on 12 November 2019

Exalign: a new method for comparative analysis of exon-intron gene structures

artículo científico

Gain-of-function p53 mutants have widespread genomic locations partially overlapping with p63.

artículo científico publicado en 2012

Genome wide features, distribution and correlations of NF-Y binding sites

artículo científico publicado en 2016

Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis.

artículo científico publicado en 2013

Integrating Peak Colocalization and Motif Enrichment Analysis for the Discovery of Genome-Wide Regulatory Modules and Transcription Factor Recruitment Rules

scientific article published on 21 February 2020

Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

scientific article published on 08 November 2021

Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance ⬇️

scientific article published on 01 March 2019

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes

artículo científico publicado en 2006

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

artículo científico publicado en 2012

PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data

scientific article published on 26 November 2019

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

artículo científico publicado en 2009

PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

artículo científico publicado en 2013

RIP-Seq data analysis to determine RNA-protein associations.

artículo científico publicado en 2015

Resetting cancer stem cell regulatory nodes upon MYC inhibition.

artículo científico publicado en 2016

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

artículo científico publicado en 2012

The bio.tools registry of software tools and data resources for the life sciences

article

Tools and data services registry: a community effort to document bioinformatics resources

artículo científico publicado en 2016

Transcriptional network of p63 in human keratinocytes.

artículo científico publicado en 2009

Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences.

artículo científico publicado en 2014

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

artículo científico publicado en 2007

YAP contributes to DNA methylation remodeling upon mouse embryonic stem cell differentiation

scientific article published on 02 December 2020

miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth ⬇️

artículo científico publicado en 2015

Lista de obras de Federico Zambelli

A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors

A perspective of promoter architecture from the CCAAT box.

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing

An acetylation-mono-ubiquitination switch on lysine 120 of H2B.

Assessment of orthologous splicing isoforms in human and mouse orthologous genes

CoVaCS: a consensus variant calling system

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data

Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets

De novo secondary structure motif discovery using RNAProfile.

Epigenetic signatures of stress adaptation and flowering regulation in response to extended drought and recovery in Zea mays

Exalign: a new method for comparative analysis of exon-intron gene structures

Gain-of-function p53 mutants have widespread genomic locations partially overlapping with p63.

Genome wide features, distribution and correlations of NF-Y binding sites

Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis.

Integrating Peak Colocalization and Motif Enrichment Analysis for the Discovery of Genome-Wide Regulatory Modules and Transcription Factor Recruitment Rules

Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance ⬇️

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

RIP-Seq data analysis to determine RNA-protein associations.

Resetting cancer stem cell regulatory nodes upon MYC inhibition.

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

The bio.tools registry of software tools and data resources for the life sciences

Tools and data services registry: a community effort to document bioinformatics resources

Transcriptional network of p63 in human keratinocytes.

Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences.

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

YAP contributes to DNA methylation remodeling upon mouse embryonic stem cell differentiation

miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth ⬇️