Lista de obras - Piero Fariselli - Dominio Público Uruguay

A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions

A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues

artículo científico publicado en 2004

A computational approach for detecting peptidases and their specific inhibitors at the genome level

artículo científico publicado en 2007

A graph theoretic approach to protein structure selection.

artículo científico publicado en 2008

A high diffusion coefficient for coenzyme Q10 might be related to a folded structure

artículo científico publicado en 1998

A mathematical model relating diffusion of hydrophobic ions to their adsorption on biological membranes as detected with a microdialyzer

scholarly article by Piero Fariselli published in September 1993

A neural network approach to evaluate fold recognition results.

artículo científico publicado en 2003

A neural-network-based method for predicting protein stability changes upon single point mutations.

artículo científico publicado en 2004

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

artículo científico publicado en 2005

A three-state prediction of single point mutations on protein stability changes.

artículo científico publicado en 2008

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing

artículo científico publicado en 2011

AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints

artículo científico publicado en 2015

An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins

artículo científico publicado en 2003

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences

artículo científico publicado en 2011

BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes

artículo científico publicado en 2013

BaCelLo: a balanced subcellular localization predictor

artículo científico publicado en 2006

Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure

artículo científico publicado en 2011

CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.

artículo científico publicado en 2009

Can functional regions of proteins be predicted from their coding sequences? The case study of G-protein coupled receptors.

artículo científico publicado en 1998

Characterization of 9-aminoacridine interaction with chromatophore membranes and modelling of the probe response to artificially induced transmembrane ΔpH values

artículo científico publicado en 1995

Computer-based prediction of mitochondria-targeting peptides

artículo científico publicado en 2015

ConSeq: the identification of functionally and structurally important residues in protein sequences

artículo científico publicado en 2004

Correlating disease-related mutations to their effect on protein stability: a large-scale analysis of the human proteome

artículo científico publicado en 2011

Development of a REDCap-based workflow for high-volume relational data analysis on real-time data in a medical department using open source software

artículo científico publicado en 2022

Divide and Conquer Strategies for Protein Structure Prediction

Erratum to: `Functional genetic tests of DNA mismatch repair protein activity in Saccharomyces cerevisiae' [Gene 213 (1998) 159–167]

article

Evolution of detoxifying systems: the role of environment and population history in shaping genetic diversity at human CYP2D6 locus.

artículo científico publicado en 2010

Extended and Robust Protein Sequence Annotation over Conservative Nonhierarchical Clusters

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps

artículo científico publicado en 2008

Fast overlapping of protein contact maps by alignment of eigenvectors

artículo científico publicado en 2010

Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria

artículo científico publicado en 2003

Functional annotations improve the predictive score of human disease-related mutations in proteins

artículo científico publicado en 2009

Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications

artículo científico publicado en 2009

High Throughput Comparison of Prokaryotic Genomes

How to inherit statistically validated annotation within BAR+ protein clusters

artículo científico

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure

artículo científico publicado en 2005

Improving Coiled-Coil Prediction with Evolutionary Information

Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines ⬇️

artículo científico publicado el 3 de octubre de 2011

Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization.

artículo científico publicado en 2011

Is there an optimal substitution matrix for contact prediction with correlated mutations?

artículo científico publicado en 2011

LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins

artículo científico publicado en 1995

Machine learning and the prediction of protein structure: the state of the art

scholarly article published 2006

Machine-Learning Methods to Predict Protein Interaction Sites in Folded Proteins

scholarly article by Castrense Savojardo et al published 2012 in Lecture Notes in Computer Science

MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments

artículo científico publicado en 2003

MemPype: a pipeline for the annotation of eukaryotic membrane proteins

artículo científico publicado en 2011

On the Reconstruction of Three-dimensional Protein Structures from Contact Maps

On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices

On the Upper Bounds of the Real-Valued Predictions

scientific article published on 23 August 2019

On the biases in predictions of protein stability changes upon variations: the INPS test case

article

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins

artículo científico publicado en 2006

Predicting protein stability changes from sequences using support vector machines

artículo científico publicado en 2005

Predicting protein thermostability changes from sequence upon multiple mutations

artículo científico publicado en 2008

Predicting secondary structures of membrane proteins with neural networks.

artículo científico publicado en 1993

Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations. ⬇️

artículo científico publicado en 2013

Prediction of disulfide-bonded cysteines in proteomes with a hidden neural network

artículo científico publicado en 2004

Prediction of protein--protein interaction sites in heterocomplexes with neural networks

artículo científico publicado en 2002

Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods

scholarly article by Castrense Savojardo et al published 2011 in Lecture Notes in Computer Science

Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy

artículo científico publicado en 2002

Predictions of protein segments with the same aminoacid sequence and different secondary structure: a benchmark for predictive methods.

artículo científico publicado en 2000

Progress and challenges in predicting protein-protein interaction sites

artículo científico publicado en 2009

Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations.

artículo científico publicado en 2001

Reconstruction of 3D structures from protein contact maps

artículo científico publicado en 2008

Robust determinants of thermostability highlighted by a codon frequency index capable of discriminating thermophilic from mesophilic genomes

artículo científico publicado en 2007

Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins

scholarly article by Piero Fariselli published in August 1999

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation

artículo científico

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.

artículo científico publicado en 2014

TRAMPLE: the transmembrane protein labelling environment

artículo científico publicado en 2005

The Effect of Membranes on the Conformation of Neuromedin C ⬇️

artículo científico publicado el 14 de septiembre de 1995

The WWWH of remote homolog detection: the state of the art.

artículo científico publicado en 2006

The bologna annotation resource: a non hierarchical method for the functional and structural annotation of protein sequences relying on a comparative large-scale genome analysis

article

The effect of backbone on the small-world properties of protein contact maps

artículo científico publicado en 2007

The implications of alternative splicing in the ENCODE protein complement

artículo científico publicado en 2007

The prediction of membrane protein structure and genome structural annotation

artículo científico publicado en 2003

The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.

artículo científico publicado en 2013

The prediction of protein-protein interacting sites in genome-wide protein interaction networks: the test case of the human cell cycle.

artículo científico publicado en 2010

The s2D method: simultaneous sequence-based prediction of the statistical populations of ordered and disordered regions in proteins

artículo científico publicado en 2014

The state of the art of membrane protein structure prediction: from sequence to 3D structure

Topology prediction of membrane proteins: how distantly related homologs come into play

article published in 2010

Weather factors influencing the population dynamics of Culex pipiens (Diptera: Culicidae) in the Po Plain Valley, Italy (1997-2011).

artículo científico publicado en 2014

eSLDB: eukaryotic subcellular localization database.

artículo científico publicado en 2006

Lista de obras de Piero Fariselli

A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions

A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues

A computational approach for detecting peptidases and their specific inhibitors at the genome level

A graph theoretic approach to protein structure selection.

A high diffusion coefficient for coenzyme Q10 might be related to a folded structure

A mathematical model relating diffusion of hydrophobic ions to their adsorption on biological membranes as detected with a microdialyzer

A neural network approach to evaluate fold recognition results.

A neural-network-based method for predicting protein stability changes upon single point mutations.

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

A three-state prediction of single point mutations on protein stability changes.

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing

AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints

An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences

BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes

BaCelLo: a balanced subcellular localization predictor

Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure

CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.

Can functional regions of proteins be predicted from their coding sequences? The case study of G-protein coupled receptors.

Characterization of 9-aminoacridine interaction with chromatophore membranes and modelling of the probe response to artificially induced transmembrane ΔpH values

Computer-based prediction of mitochondria-targeting peptides

ConSeq: the identification of functionally and structurally important residues in protein sequences

Correlating disease-related mutations to their effect on protein stability: a large-scale analysis of the human proteome

Development of a REDCap-based workflow for high-volume relational data analysis on real-time data in a medical department using open source software

Divide and Conquer Strategies for Protein Structure Prediction

Erratum to: `Functional genetic tests of DNA mismatch repair protein activity in Saccharomyces cerevisiae' [Gene 213 (1998) 159–167]

Evolution of detoxifying systems: the role of environment and population history in shaping genetic diversity at human CYP2D6 locus.

Extended and Robust Protein Sequence Annotation over Conservative Nonhierarchical Clusters

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps

Fast overlapping of protein contact maps by alignment of eigenvectors

Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria

Functional annotations improve the predictive score of human disease-related mutations in proteins

Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications

High Throughput Comparison of Prokaryotic Genomes

How to inherit statistically validated annotation within BAR+ protein clusters

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure

Improving Coiled-Coil Prediction with Evolutionary Information

Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines ⬇️

Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization.

Is there an optimal substitution matrix for contact prediction with correlated mutations?

LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins

Machine learning and the prediction of protein structure: the state of the art

Machine-Learning Methods to Predict Protein Interaction Sites in Folded Proteins

MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments

MemPype: a pipeline for the annotation of eukaryotic membrane proteins

On the Reconstruction of Three-dimensional Protein Structures from Contact Maps

On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices

On the Upper Bounds of the Real-Valued Predictions

On the biases in predictions of protein stability changes upon variations: the INPS test case

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins

Predicting protein stability changes from sequences using support vector machines

Predicting protein thermostability changes from sequence upon multiple mutations

Predicting secondary structures of membrane proteins with neural networks.

Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations. ⬇️

Prediction of disulfide-bonded cysteines in proteomes with a hidden neural network

Prediction of protein--protein interaction sites in heterocomplexes with neural networks

Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods

Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy

Predictions of protein segments with the same aminoacid sequence and different secondary structure: a benchmark for predictive methods.

Progress and challenges in predicting protein-protein interaction sites

Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations.

Reconstruction of 3D structures from protein contact maps

Robust determinants of thermostability highlighted by a codon frequency index capable of discriminating thermophilic from mesophilic genomes

Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.

TRAMPLE: the transmembrane protein labelling environment

The Effect of Membranes on the Conformation of Neuromedin C ⬇️

The WWWH of remote homolog detection: the state of the art.

The bologna annotation resource: a non hierarchical method for the functional and structural annotation of protein sequences relying on a comparative large-scale genome analysis

The effect of backbone on the small-world properties of protein contact maps

The implications of alternative splicing in the ENCODE protein complement

The prediction of membrane protein structure and genome structural annotation

The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.

The prediction of protein-protein interacting sites in genome-wide protein interaction networks: the test case of the human cell cycle.

The s2D method: simultaneous sequence-based prediction of the statistical populations of ordered and disordered regions in proteins

The state of the art of membrane protein structure prediction: from sequence to 3D structure

Topology prediction of membrane proteins: how distantly related homologs come into play