Lista de obras - Chien-Chi Lo - Dominio Público Uruguay

A Public Website for the Automated Assessment and Validation of SARS-CoV-2 Diagnostic PCR Assays

scientific article published on 10 August 2020

A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities

artículo científico publicado en 2012

ADEPT, a dynamic next generation sequencing data error-detection program with trimming

artículo científico publicado en 2016

Adaptation genomics of a small-colony variant in a Pseudomonas chlororaphis 30-84 biofilm.

artículo científico publicado en 2014

Advances and Challenges in Metatranscriptomic Analysis

artículo científico publicado en 2019

Artificial polyploidy improves bacterial single cell genome recovery

artículo científico publicado en 2012

Benchmark datasets for SARS-CoV-2 surveillance bioinformatics

artículo científico publicado en 2022

Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater

artículo científico publicado en 2016

CRP-Mediated Carbon Catabolite Regulation of Yersinia pestis Biofilm Formation Is Enhanced by the Carbon Storage Regulator Protein, CsrA.

artículo científico publicado en 2015

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

artículo científico publicado en 2012

Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways.

artículo científico publicado en 2009

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.

artículo científico publicado en 2010

Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing <i>Escherichia coli</i> O145:H28

artículo científico publicado en 2022

Complete Genome Assembly of a Quality Control Reference Isolate, Moraxella catarrhalis Strain ATCC 25240.

artículo científico publicado en 2014

Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137.

artículo científico publicado en 2014

Complete genome sequences for 35 biothreat assay-relevant bacillus species

artículo científico publicado en 2015

Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species".

artículo científico publicado en 2018

Diagnostic targETEd seQuencing adjudicaTion (DETEQT): Algorithms for Adjudicating Targeted Infectious Disease Next-Generation Sequencing Panels

scientific article published on 28 September 2018

Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate.

artículo científico publicado en 2014

Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883

artículo científico publicado en 2014

Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853).

artículo científico publicado en 2014

Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium

artículo científico publicado en 2013

Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets

artículo científico publicado en 2015

Draft Genomes for Eight Burkholderia mallei Isolates from Turkey.

artículo científico publicado en 2016

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts

artículo científico publicado en 2022

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

artículo científico publicado en 2016

First Complete Genome Sequence of Felis catus Gammaherpesvirus 1.

artículo científico publicado en 2015

Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247).

artículo científico publicado en 2014

Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain

artículo científico publicado en 2014

Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir.

artículo científico publicado en 2015

Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species

artículo científico publicado en 2015

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent

artículo científico publicado en 2015

Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)

artículo científico publicado en 2013

Genome sequence of Kingella kingae septic arthritis isolate PYKK081.

artículo científico publicado en 2012

Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)

artículo científico publicado en 2018

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2

artículo científico publicado en 2012

Genomics for key players in the N cycle from guinea pigs to the next frontier

scientific article published on January 2011

High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp.

artículo científico publicado en 2017

Identification of Lineage Associated Virulence Genes in Shiga Toxin-Producing Escherichia Coli by Pangenome Analysis

artículo científico publicado en 2021

Improved assemblies using a source-agnostic pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of contigs.

artículo científico publicado en 2014

Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach

artículo científico publicado en 2017

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

artículo científico publicado en 2013

Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.

artículo científico publicado en 2011

Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

artículo científico publicado en 2011

Rapid evaluation and quality control of next generation sequencing data with FaQCs.

artículo científico publicado en 2014

Recruiting human microbiome shotgun data to site-specific reference genomes

artículo científico publicado en 2014

Saliva microbiomes distinguish caries-active from healthy human populations ⬇️

artículo científico publicado el 30 de junio de 2011

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

artículo científico publicado en 2013

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life

artículo científico publicado en 2020

The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice

artículo científico publicado en 2020

The National Microbiome Data Collaborative: enabling microbiome science

artículo científico publicado en 2020

The alternative translational profile that underlies the immune-evasive state of persistence in Chlamydiaceae exploits differential tryptophan contents of the protein repertoire

artículo científico publicado en 2012

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica

artículo científico publicado en 2015

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

artículo científico publicado en 2010

Twenty Whole-Genome Bacillus sp. Assemblies

artículo científico publicado en 2014

Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago, Antarctica

artículo científico publicado en 2020

Under-detection of endospore-forming Firmicutes in metagenomic data

artículo científico publicado en 2015

Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains

artículo científico publicado en 2014

Whole-genome assemblies of 56 burkholderia species

artículo científico publicado en 2014

Whole-genome sequences of 24 Brucella strains.

artículo científico publicado en 2014

Lista de obras de Chien-Chi Lo

A Public Website for the Automated Assessment and Validation of SARS-CoV-2 Diagnostic PCR Assays

A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities

ADEPT, a dynamic next generation sequencing data error-detection program with trimming

Adaptation genomics of a small-colony variant in a Pseudomonas chlororaphis 30-84 biofilm.

Advances and Challenges in Metatranscriptomic Analysis

Artificial polyploidy improves bacterial single cell genome recovery

Benchmark datasets for SARS-CoV-2 surveillance bioinformatics

Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater

CRP-Mediated Carbon Catabolite Regulation of Yersinia pestis Biofilm Formation Is Enhanced by the Carbon Storage Regulator Protein, CsrA.

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways.

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.

Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing <i>Escherichia coli</i> O145:H28

Complete Genome Assembly of a Quality Control Reference Isolate, Moraxella catarrhalis Strain ATCC 25240.

Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137.

Complete genome sequences for 35 biothreat assay-relevant bacillus species

Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species".

Diagnostic targETEd seQuencing adjudicaTion (DETEQT): Algorithms for Adjudicating Targeted Infectious Disease Next-Generation Sequencing Panels

Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate.

Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883

Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853).

Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium

Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets

Draft Genomes for Eight Burkholderia mallei Isolates from Turkey.

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

First Complete Genome Sequence of Felis catus Gammaherpesvirus 1.

Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247).

Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain

Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir.

Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species

Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent

Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)

Genome sequence of Kingella kingae septic arthritis isolate PYKK081.

Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2

Genomics for key players in the N cycle from guinea pigs to the next frontier

High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp.

Identification of Lineage Associated Virulence Genes in Shiga Toxin-Producing Escherichia Coli by Pangenome Analysis

Improved assemblies using a source-agnostic pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of contigs.

Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.

Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

Rapid evaluation and quality control of next generation sequencing data with FaQCs.

Recruiting human microbiome shotgun data to site-specific reference genomes

Saliva microbiomes distinguish caries-active from healthy human populations ⬇️

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life

The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice

The National Microbiome Data Collaborative: enabling microbiome science

The alternative translational profile that underlies the immune-evasive state of persistence in Chlamydiaceae exploits differential tryptophan contents of the protein repertoire

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

Twenty Whole-Genome Bacillus sp. Assemblies

Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago, Antarctica

Under-detection of endospore-forming Firmicutes in metagenomic data

Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains

Whole-genome assemblies of 56 burkholderia species

Whole-genome sequences of 24 Brucella strains.