Lista de obras - Rory J Bowden - Dominio Público Uruguay

A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples

artículo científico publicado en 2013

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

scientific article (publication date: 2012)

A practical solution for preserving single cells for RNA sequencing

artículo científico publicado en 2018

A single-cell atlas of the human substantia nigra reveals cell-specific pathways associated with neurological disorders

scientific article published on 21 August 2020

Analysis of Differentiation Protocols Defines a Common Pancreatic Progenitor Molecular Signature and Guides Refinement of Endocrine Differentiation

artículo científico publicado en 2019

Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.

artículo científico publicado en 2016

Cellular α-synuclein pathology is associated with bioenergetic dysfunction in Parkinson's iPSC-derived dopamine neurons.

artículo científico publicado en 2019

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse

artículo científico publicado en 2018

Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.

artículo científico publicado en 2016

Correction: Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples

artículo científico publicado en 2016

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

artículo científico publicado en 2018

Diverse sources of C. difficile infection identified on whole-genome sequencing

artículo científico publicado en 2013

Dynamics of acquisition and loss of carriage of Staphylococcus aureus strains in the community: the effect of clonal complex

scientific article published on 04 January 2014

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

artículo científico publicado en 2015

Evaluation of Viremia Frequencies of a Novel Human Pegivirus by Using Bioinformatic Screening and PCR

artículo científico publicado en 2016

Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci

artículo científico publicado en 2017

Evolutionary Origin of the Staphylococcal Cassette Chromosome mec (SCCmec).

artículo científico publicado en 2017

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

artículo científico publicado en 2012

Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm

artículo científico publicado en 2019

Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.

artículo científico publicado en 2017

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico

artículo científico publicado en 2018

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

artículo científico publicado en 2019

Impact of IFNL4 genotype on Interferon-stimulated Gene Expression during DAA therapy for Hepatitis C.

artículo científico publicado en 2018

Insights into Platypus Population Structure and History from Whole-Genome Sequencing.

artículo científico publicado en 2018

Interferon lambda 4 impacts the genetic diversity of hepatitis C virus

scientific article published on 03 September 2019

Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group.

artículo científico publicado en 2018

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi.

artículo científico publicado en 2018

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

artículo científico publicado en 2012

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

artículo científico publicado en 2015

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

artículo científico publicado en 2014

Multilocus sequence typing of Clostridium difficile

artículo científico publicado en 2009

Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting

artículo científico publicado en 2020

Panton-Valentine leucocidin is the key determinant of pyomyositis in a bacterial GWAS

artículo científico publicado en 2019

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event

artículo científico publicado en 2012

Prevalence of Staphylococcus aureus protein A (spa) mutants in the community and hospitals in Oxfordshire

artículo científico publicado en 2014

Prolonged Zika Virus RNA Detection in Semen of Immunosuppressed Patient

artículo científico publicado en 2019

Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus

artículo científico publicado en 2017

Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing

artículo científico publicado en 2012

Reproducibility of Molecular Phenotypes after Long-Term Differentiation to Human iPSC-Derived Neurons: A Multi-Site Omics Study

article

Resistance analysis of genotype 3 HCV indicates subtypes inherently resistant to NS5A inhibitors.

artículo científico publicado en 2018

Sequencing of human genomes with nanopore technology

artículo científico publicado en 2019

Severe infections emerge from commensal bacteria by adaptive evolution

artículo científico publicado en 2017

Severe infections emerge from the microbiome by adaptive evolution

Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes

scientific article published on 29 November 2018

Single-cell atlas of colonic CD8+ T cells in ulcerative colitis

artículo científico publicado en 2020

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

artículo científico publicado en 2018

Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples

artículo científico publicado en 2020

The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq

artículo científico publicado en 2017

Transcriptomic profiling of purified patient-derived dopamine neurons identifies convergent perturbations and therapeutics for Parkinson's disease

artículo científico publicado en 2017

Transforming clinical microbiology with bacterial genome sequencing.

artículo científico publicado en 2012

Viral genome wide association study identifies novel hepatitis C virus polymorphisms associated with sofosbuvir treatment failure

artículo científico publicado en 2021

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

artículo científico publicado en 2015

Whole-genome sequencing shows that patient-to-patient transmission rarely accounts for acquisition of Staphylococcus aureus in an intensive care unit

artículo científico publicado en 2013

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

artículo científico publicado en 2012

Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

artículo científico publicado en 2013

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

artículo científico publicado en 2015

Lista de obras de Rory J Bowden

A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

A practical solution for preserving single cells for RNA sequencing

A single-cell atlas of the human substantia nigra reveals cell-specific pathways associated with neurological disorders

Analysis of Differentiation Protocols Defines a Common Pancreatic Progenitor Molecular Signature and Guides Refinement of Endocrine Differentiation

Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.

Cellular α-synuclein pathology is associated with bioenergetic dysfunction in Parkinson's iPSC-derived dopamine neurons.

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse

Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.

Correction: Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

Diverse sources of C. difficile infection identified on whole-genome sequencing

Dynamics of acquisition and loss of carriage of Staphylococcus aureus strains in the community: the effect of clonal complex

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

Evaluation of Viremia Frequencies of a Novel Human Pegivirus by Using Bioinformatic Screening and PCR

Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci

Evolutionary Origin of the Staphylococcal Cassette Chromosome mec (SCCmec).

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm

Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

Impact of IFNL4 genotype on Interferon-stimulated Gene Expression during DAA therapy for Hepatitis C.

Insights into Platypus Population Structure and History from Whole-Genome Sequencing.

Interferon lambda 4 impacts the genetic diversity of hepatitis C virus

Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group.

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi.

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

Multilocus sequence typing of Clostridium difficile

Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting

Panton-Valentine leucocidin is the key determinant of pyomyositis in a bacterial GWAS

Pneumococcal genome sequencing tracks a vaccine escape variant formed through a multi-fragment recombination event

Prevalence of Staphylococcus aureus protein A (spa) mutants in the community and hospitals in Oxfordshire

Prolonged Zika Virus RNA Detection in Semen of Immunosuppressed Patient

Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus

Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing

Reproducibility of Molecular Phenotypes after Long-Term Differentiation to Human iPSC-Derived Neurons: A Multi-Site Omics Study

Resistance analysis of genotype 3 HCV indicates subtypes inherently resistant to NS5A inhibitors.

Sequencing of human genomes with nanopore technology

Severe infections emerge from commensal bacteria by adaptive evolution

Severe infections emerge from the microbiome by adaptive evolution

Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes

Single-cell atlas of colonic CD8+ T cells in ulcerative colitis

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples

The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq

Transcriptomic profiling of purified patient-derived dopamine neurons identifies convergent perturbations and therapeutics for Parkinson's disease

Transforming clinical microbiology with bacterial genome sequencing.

Viral genome wide association study identifies novel hepatitis C virus polymorphisms associated with sofosbuvir treatment failure

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

Whole-genome sequencing shows that patient-to-patient transmission rarely accounts for acquisition of Staphylococcus aureus in an intensive care unit

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens