Lista de obras - Bairong Shen - Dominio Público Uruguay

A novel mutation in CD40 and its functional characterization.

artículo científico publicado en 2009

A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

artículo científico publicado en 2011

A systems biology perspective on rational design of peptide vaccine against virus infections

artículo científico publicado en 2012

Altered Expression Levels of MicroRNA-132 and Nurr1 in Peripheral Blood of Parkinson's Disease: Potential Disease Biomarkers

scientific article published on 01 April 2019

Amino acid contact energy networks impact protein structure and evolution.

artículo científico publicado en 2014

Amino acid network for prediction of catalytic residues in enzymes: a comparison survey.

artículo científico publicado en 2015

An integrated text mining framework for metabolic interaction network reconstruction

artículo científico publicado en 2016

Biomarker microRNAs for prostate cancer metastasis: screened with a network vulnerability analysis model.

artículo científico publicado en 2018

Biomedical data integration, modeling, and simulation in the era of big data and translational medicine

artículo científico publicado en 2014

Biomedical informatics and computational biology for high-throughput data analysis

artículo científico publicado en 2014

Biomedical text mining and its applications in cancer research

artículo científico publicado en 2012

CD93 orchestrates the tumor microenvironment and predicts the molecular subtype and therapy response of bladder cancer

scientific article published in 2022

Characterization of CA XIII, a novel member of the carbonic anhydrase isozyme family

scientific journal article

Comparison of Prognostic MicroRNA Biomarkers in Blood and Tissues for Gastric Cancer

artículo científico publicado en 2016

Computational Analysis of the Binding Specificities of PH Domains

artículo científico publicado en 2015

Computational advances in cancer informatics (a).

artículo científico publicado en 2014

Computational analysis of microRNA function in heart development.

artículo científico

Data-driven translational prostate cancer research: from biomarker discovery to clinical decision

scientific article published on 07 March 2020

Deciphering oncogenic drivers: from single genes to integrated pathways

artículo científico publicado en 2014

Diagnosis value of the serum amyloid A test in neonatal sepsis: a meta-analysis.

artículo científico publicado en 2013

Discovery and characterization of long intergenic non-coding RNAs (lincRNA) module biomarkers in prostate cancer: an integrative analysis of RNA-Seq data

artículo científico publicado en 2015

Effects of time point measurement on the reconstruction of gene regulatory networks

artículo científico publicado en 2010

Evaluation and comparison of multiple aligners for next-generation sequencing data analysis

artículo científico publicado en 2014

Genome wide analysis of pathogenic SH2 domain mutations

artículo científico publicado en 2008

Identification and functional annotation of genome-wide ER-regulated genes in breast cancer based on ChIP-Seq data

artículo científico publicado en 2012

Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer

artículo científico publicado en 2014

Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis

artículo científico publicado en 2014

Identification of novel microRNA regulatory pathways associated with heterogeneous prostate cancer.

artículo científico publicado en 2013

Identification of the genes regulated by Wnt-4, a critical signal for commitment of the ovary.

artículo científico publicado en 2015

Identifying novel glioma associated pathways based on systems biology level meta-analysis

artículo científico publicado en 2013

Identifying novel prostate cancer associated pathways based on integrative microarray data analysis

artículo científico publicado en 2011

InCoB2013 introduces Systems Biology as a major conference theme

artículo científico publicado en 2013

Integrative analysis reveals disease-associated genes and biomarkers for prostate cancer progression

artículo científico publicado en 2014

Investigating cellular network heterogeneity and modularity in cancer: a network entropy and unbalanced motif approach

artículo científico publicado en 2016

Investigation of the Acetylation Mechanism by GCN5 Histone Acetyltransferase ⬇️

artículo científico publicado el 4 de mayo de 2012

Key regulators in prostate cancer identified by co-expression module analysis

artículo científico publicado en 2014

LIMS and Clinical Data Management

artículo científico publicado en 2016

Loss of CHGA Protein as a Potential Biomarker for Colon Cancer Diagnosis: A Study on Biomarker Discovery by Machine Learning and Confirmation by Immunohistochemistry in Colorectal Cancer Tissue Microarrays

artículo científico publicado en 2022

MiRNA-BD: an evidence-based bioinformatics model and software tool for microRNA biomarker discovery

artículo científico publicado en 2018

Molecular dynamic simulation to explore the molecular basis of Btk-PH domain interaction with Ins(1,3,4,5)P4.

artículo científico publicado en 2013

Molecular signature of cancer at gene level or pathway level? Case studies of colorectal cancer and prostate cancer microarray data

artículo científico publicado en 2013

Multi-omics network characterization reveals novel microRNA biomarkers and mechanisms for diagnosis and subtyping of kidney transplant rejection

artículo científico publicado en 2021

Network modelling reveals the mechanism underlying colitis-associated colon cancer and identifies novel combinatorial anti-cancer targets

artículo científico publicado en 2015

Network vulnerability-based and knowledge-guided identification of microRNA biomarkers indicating platinum resistance in high-grade serous ovarian cancer

artículo científico publicado en 2019

New genes drive the evolution of gene interaction networks in the human and mouse genomes

artículo científico publicado en 2015

Node-Weighted Amino Acid Network Strategy for Characterization and Identification of Protein Functional Residues

scientific article published on 27 August 2018

Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach.

scientific article published on December 2016

Origination of new immunological functions in the costimulatory molecule B7-H3: the role of exon duplication in evolution of the immune system

artículo científico publicado en 2011

PON-Sol: prediction of effects of amino acid substitutions on protein solubility.

artículo científico publicado en 2016

Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis ⬇️

artículo científico publicado el 28 de enero de 2012

Post genome-wide association studies functional characterization of prostate cancer risk loci

artículo científico publicado en 2013

Protein interaction network constructing based on text mining and reinforcement learning with application to prostate cancer

artículo científico publicado en 2015

RankViaContact: ranking and visualization of amino acid contacts

artículo científico publicado en 2003

Residue interaction network analysis of Dronpa and a DNA clamp.

artículo científico publicado en 2014

SVR_CAF: an integrated score function for detecting native protein structures among decoys.

artículo científico publicado en 2013

Screening key microRNAs for castration-resistant prostate cancer based on miRNA/mRNA functional synergistic network

artículo científico publicado en 2015

Segmentation of neuronal structures using SARSA (λ)-based boundary amendment with reinforced gradient-descent curve shape fitting

artículo científico publicado en 2014

Small RNAome sequencing delineates the small RNA landscape of pluripotent adult stem cells in the planarian Schmidtea mediterranea.

artículo científico publicado en 2017

Structure-based prediction of the effects of a missense variant on protein stability.

artículo científico publicado en 2012

Systematic investigation of global coordination among mRNA and protein in cellular society

artículo científico publicado en 2010

The International Natural Product Sciences Taskforce (INPST) and the power of Twitter networking exemplified through #INPST hashtag analysis

artículo científico publicado en 2023

The construction of an amino acid network for understanding protein structure and function.

artículo científico publicado en 2014

The landscape of emerging ceRNA crosstalks in colorectal cancer: Systems biological perspectives and translational applications

artículo científico publicado en 2020

The preservation of bidirectional promoter architecture in eukaryotes: what is the driving force?

artículo científico publicado en 2012

The topology and dynamics of protein complexes: insights from intra- molecular network theory.

artículo científico

Translational Informatics for Parkinson's Disease: from Big Biomedical Data to Small Actionable Alterations

scientific article published on 01 August 2019

Translational bioinformatics for diagnostic and prognostic prediction of prostate cancer in the next-generation sequencing era.

artículo científico publicado en 2013

Translational biomedical informatics and computational systems medicine.

artículo científico publicado en 2013

Translational biomedical informatics in the cloud: present and future

artículo científico publicado en 2013

Two functional microRNA-126s repress a novel target gene p21-activated kinase 1 to regulate vascular integrity in zebrafish

artículo científico publicado en 2010

Virtual screening and biological evaluation of novel small molecular inhibitors against protein arginine methyltransferase 1 (PRMT1).

artículo científico publicado en 2014

Wnt4, a pleiotropic signal for controlling cell polarity, basement membrane integrity, and antimüllerian hormone expression during oocyte maturation in the female follicle.

artículo científico publicado en 2013

Lista de obras de Bairong Shen

A novel mutation in CD40 and its functional characterization.

A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

A systems biology perspective on rational design of peptide vaccine against virus infections

Altered Expression Levels of MicroRNA-132 and Nurr1 in Peripheral Blood of Parkinson's Disease: Potential Disease Biomarkers

Amino acid contact energy networks impact protein structure and evolution.

Amino acid network for prediction of catalytic residues in enzymes: a comparison survey.

An integrated text mining framework for metabolic interaction network reconstruction

Biomarker microRNAs for prostate cancer metastasis: screened with a network vulnerability analysis model.

Biomedical data integration, modeling, and simulation in the era of big data and translational medicine

Biomedical informatics and computational biology for high-throughput data analysis

Biomedical text mining and its applications in cancer research

CD93 orchestrates the tumor microenvironment and predicts the molecular subtype and therapy response of bladder cancer

Characterization of CA XIII, a novel member of the carbonic anhydrase isozyme family

Comparison of Prognostic MicroRNA Biomarkers in Blood and Tissues for Gastric Cancer

Computational Analysis of the Binding Specificities of PH Domains

Computational advances in cancer informatics (a).

Computational analysis of microRNA function in heart development.

Data-driven translational prostate cancer research: from biomarker discovery to clinical decision

Deciphering oncogenic drivers: from single genes to integrated pathways

Diagnosis value of the serum amyloid A test in neonatal sepsis: a meta-analysis.

Discovery and characterization of long intergenic non-coding RNAs (lincRNA) module biomarkers in prostate cancer: an integrative analysis of RNA-Seq data

Effects of time point measurement on the reconstruction of gene regulatory networks

Evaluation and comparison of multiple aligners for next-generation sequencing data analysis

Genome wide analysis of pathogenic SH2 domain mutations

Identification and functional annotation of genome-wide ER-regulated genes in breast cancer based on ChIP-Seq data

Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer

Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis

Identification of novel microRNA regulatory pathways associated with heterogeneous prostate cancer.

Identification of the genes regulated by Wnt-4, a critical signal for commitment of the ovary.

Identifying novel glioma associated pathways based on systems biology level meta-analysis

Identifying novel prostate cancer associated pathways based on integrative microarray data analysis

InCoB2013 introduces Systems Biology as a major conference theme

Integrative analysis reveals disease-associated genes and biomarkers for prostate cancer progression

Investigating cellular network heterogeneity and modularity in cancer: a network entropy and unbalanced motif approach

Investigation of the Acetylation Mechanism by GCN5 Histone Acetyltransferase ⬇️

Key regulators in prostate cancer identified by co-expression module analysis

LIMS and Clinical Data Management

Loss of CHGA Protein as a Potential Biomarker for Colon Cancer Diagnosis: A Study on Biomarker Discovery by Machine Learning and Confirmation by Immunohistochemistry in Colorectal Cancer Tissue Microarrays

MiRNA-BD: an evidence-based bioinformatics model and software tool for microRNA biomarker discovery

Molecular dynamic simulation to explore the molecular basis of Btk-PH domain interaction with Ins(1,3,4,5)P4.

Molecular signature of cancer at gene level or pathway level? Case studies of colorectal cancer and prostate cancer microarray data

Multi-omics network characterization reveals novel microRNA biomarkers and mechanisms for diagnosis and subtyping of kidney transplant rejection

Network modelling reveals the mechanism underlying colitis-associated colon cancer and identifies novel combinatorial anti-cancer targets

Network vulnerability-based and knowledge-guided identification of microRNA biomarkers indicating platinum resistance in high-grade serous ovarian cancer

New genes drive the evolution of gene interaction networks in the human and mouse genomes

Node-Weighted Amino Acid Network Strategy for Characterization and Identification of Protein Functional Residues

Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach.

Origination of new immunological functions in the costimulatory molecule B7-H3: the role of exon duplication in evolution of the immune system

PON-Sol: prediction of effects of amino acid substitutions on protein solubility.

Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis ⬇️

Post genome-wide association studies functional characterization of prostate cancer risk loci

Protein interaction network constructing based on text mining and reinforcement learning with application to prostate cancer

RankViaContact: ranking and visualization of amino acid contacts

Residue interaction network analysis of Dronpa and a DNA clamp.

SVR_CAF: an integrated score function for detecting native protein structures among decoys.

Screening key microRNAs for castration-resistant prostate cancer based on miRNA/mRNA functional synergistic network

Segmentation of neuronal structures using SARSA (λ)-based boundary amendment with reinforced gradient-descent curve shape fitting

Small RNAome sequencing delineates the small RNA landscape of pluripotent adult stem cells in the planarian Schmidtea mediterranea.

Structure-based prediction of the effects of a missense variant on protein stability.

Systematic investigation of global coordination among mRNA and protein in cellular society

The International Natural Product Sciences Taskforce (INPST) and the power of Twitter networking exemplified through #INPST hashtag analysis

The construction of an amino acid network for understanding protein structure and function.

The landscape of emerging ceRNA crosstalks in colorectal cancer: Systems biological perspectives and translational applications

The preservation of bidirectional promoter architecture in eukaryotes: what is the driving force?

The topology and dynamics of protein complexes: insights from intra- molecular network theory.

Translational Informatics for Parkinson's Disease: from Big Biomedical Data to Small Actionable Alterations

Translational bioinformatics for diagnostic and prognostic prediction of prostate cancer in the next-generation sequencing era.

Translational biomedical informatics and computational systems medicine.

Translational biomedical informatics in the cloud: present and future

Two functional microRNA-126s repress a novel target gene p21-activated kinase 1 to regulate vascular integrity in zebrafish

Virtual screening and biological evaluation of novel small molecular inhibitors against protein arginine methyltransferase 1 (PRMT1).

Wnt4, a pleiotropic signal for controlling cell polarity, basement membrane integrity, and antimüllerian hormone expression during oocyte maturation in the female follicle.