Lista de obras - Lee Ann McCue - Dominio Público Uruguay

A family of acr-coregulated Mycobacterium tuberculosis genes shares a common DNA motif and requires Rv3133c (dosR or devR) for expression.

artículo científico publicado en 2003

A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142.

artículo científico publicado en 2011

A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction

artículo científico publicado en 2007

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

artículo científico publicado en 2020

Analytics challenge---High-throughput visual analytics biological sciences

article

Characterization of Mycobacterium tuberculosis Rv3676 (CRPMt), a cyclic AMP receptor protein-like DNA binding protein.

artículo científico publicado en 2005

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data

artículo científico publicado en 2010

Comparative bacterial proteomics: analysis of the core genome concept

artículo científico publicado en 2008

Comparative systems biology across an evolutionary gradient within the Shewanella genus.

artículo científico publicado en 2009

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

artículo científico publicado en 2021

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

artículo científico publicado en 2002

Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface

artículo científico publicado en 2013

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1.

artículo científico publicado en 2011

Functional Classification of cNMP-binding Proteins and Nucleotide Cyclases with Implications for Novel Regulatory Pathways in Mycobacterium tuberculosis

scientific article published on 01 February 2000

Fusion of laboratory and textual data for investigative bioforensics ⬇️

artículo científico publicado el 10 de enero de 2013

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

artículo científico publicado en 2013

Identification and characterization of a developmentally regulated protein, EshA, required for sporogenic hyphal branches in Streptomyces griseus.

artículo científico publicado en 2001

Identification of a Mycobacterium tuberculosis putative classical nitroreductase gene whose expression is coregulated with that of the acr aene within macrophages, in standing versus shaking cultures, and under low oxygen conditions.

artículo científico publicado en 2002

Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites

artículo científico publicado en 2003

Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome

artículo científico publicado en 2008

Let the Data Do the Talking: Hypothesis Discovery from Large-Scale Data Sets in Real Time

Linking microbial community structure to β-glucosidic function in soil aggregates.

artículo científico publicado en 2013

Making connections between novel transcription factors and their DNA motifs.

artículo científico publicado en 2005

Measuring global credibility with application to local sequence alignment.

artículo científico publicado en 2008

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

artículo científico publicado en 2021

Molecular analysis of sporulation in Streptomyces griseus ⬇️

artículo científico publicado el 15 de junio de 1992

PhyloScan: identification of transcription factor binding sites using cross-species evidence

artículo científico publicado en 2007

Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece

artículo científico publicado en 2014

Rhodopseudomonas palustris regulons detected by cross-species analysis of alphaproteobacterial genomes

artículo científico publicado en 2005

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes

artículo científico publicado en 2013

Software to perform automated comparisons of pair-wise percent identities for microbial species

scientific article published on 01 May 2006

Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland

artículo científico publicado en 2022

Soil Respiration and Bacterial Structure and Function after 17 Years of a Reciprocal Soil Transplant Experiment

artículo científico publicado en 2016

Soluble expression and complex formation of proteins required for HCMV DNA replication using the SFV expression system.

artículo científico publicado en 1998

The Gibbs Centroid Sampler

artículo científico publicado en 2007

The relative inefficiency of sequence weights approaches in determining a nucleotide position weight matrix.

artículo científico publicado en 2005

The tricarboxylic acid cycle in Shewanella oneidensis is independent of Fur and RyhB control

artículo científico publicado en 2010

Using the Gibbs Motif Sampler for Phylogenetic Footprinting

article

Using the Gibbs Motif Sampler to Find Conserved Domains in DNA and Protein Sequences

article

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data

artículo científico publicado en 2012

ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data

artículo científico publicado en 2020

pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data

scientific article published on 28 January 2019

Lista de obras de Lee Ann McCue

A family of acr-coregulated Mycobacterium tuberculosis genes shares a common DNA motif and requires Rv3133c (dosR or devR) for expression.

A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142.

A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

Analytics challenge---High-throughput visual analytics biological sciences

Characterization of Mycobacterium tuberculosis Rv3676 (CRPMt), a cyclic AMP receptor protein-like DNA binding protein.

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data

Comparative bacterial proteomics: analysis of the core genome concept

Comparative systems biology across an evolutionary gradient within the Shewanella genus.

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1.

Functional Classification of cNMP-binding Proteins and Nucleotide Cyclases with Implications for Novel Regulatory Pathways in Mycobacterium tuberculosis

Fusion of laboratory and textual data for investigative bioforensics ⬇️

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

Identification and characterization of a developmentally regulated protein, EshA, required for sporogenic hyphal branches in Streptomyces griseus.

Identification of a Mycobacterium tuberculosis putative classical nitroreductase gene whose expression is coregulated with that of the acr aene within macrophages, in standing versus shaking cultures, and under low oxygen conditions.

Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites

Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome

Let the Data Do the Talking: Hypothesis Discovery from Large-Scale Data Sets in Real Time

Linking microbial community structure to β-glucosidic function in soil aggregates.

Making connections between novel transcription factors and their DNA motifs.

Measuring global credibility with application to local sequence alignment.

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

Molecular analysis of sporulation in Streptomyces griseus ⬇️

PhyloScan: identification of transcription factor binding sites using cross-species evidence

Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece

Rhodopseudomonas palustris regulons detected by cross-species analysis of alphaproteobacterial genomes

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes

Software to perform automated comparisons of pair-wise percent identities for microbial species

Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland

Soil Respiration and Bacterial Structure and Function after 17 Years of a Reciprocal Soil Transplant Experiment

Soluble expression and complex formation of proteins required for HCMV DNA replication using the SFV expression system.

The Gibbs Centroid Sampler

The relative inefficiency of sequence weights approaches in determining a nucleotide position weight matrix.

The tricarboxylic acid cycle in Shewanella oneidensis is independent of Fur and RyhB control

Using the Gibbs Motif Sampler for Phylogenetic Footprinting

Using the Gibbs Motif Sampler to Find Conserved Domains in DNA and Protein Sequences

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data

ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data

pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data